Lsi01G003170 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G003170
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr01 : 2795377 .. 2796604 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCGTTTGCGAGAAGCTGATTTTTCTGGCCGTGACTGTGAATTATGTTTTCCGTTGAGTTCCTTCGATTCGCTGGAGTCCTCCTTTCGCTTTTTTCCGGGAGTTCCTTTGGCCATACATGAAATTTTCAGAGGTAGGCAGTTCGACAGCCACCTTACTTTGCTTATGATTCTCGTTTTCTTCTTCTTTTGCATGCTGTCTATTTATCCCATGGAGTTGAAGCATTTAGCCTCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCATTTTTGAACTTATCATCTGCGGGTTTTCAAGGAAGAGTGTATTCAGCTGATCAAATCGGGACATTAGTTTTCGTTTATGTTGAGATATACTTTTCTCATTTTGAGTTTATTGCCTTTTCGCGTTTTTCTTGGCTTTCCATTTGGAATTTTGTTGATGGACTGTGCAGTTACAAGGTTAAGCCCTTCGCACTTGTTTGTTTCCTGCTTTGTCTCTGTATAACTTTCTGGGAAGCACATTGAAATCATTAGTATGATGATAATTTTTTTTTTAAACTGAGTAGTTTGACATTTCCTTCTTCACCATAATTGAACGATGAATTTTGTTCTTTTTCTCTAGAAAACATTGCATCCAAATTTCATTTCTTACGCCTGTCCATGTCATATGCCGTTAAAGGAAGTAATAGTTTATAAATGCTAAAAGTGATAAGTGCAGTTCTTTCGGTATATATAGATATATTATTTTCTTCGCTATCTTTTTGAGGAATAATTTTGAGTGCTGCTGCTCGAACAACCAAAAGCGGTAGCTTCTAATCAATATGCTAATCTCGCTTCATCAGTTTTTTTAATGGAAATTACTAACAGTAATCATGGTTGCAGGTGAAAAGGAAATGCAACAGATTTGTTGGGCTGTTGATTCCATGAATAATTGA

mRNA sequence

ATGCTTCCTGATTTTTCTGGCCGTGACTGTGAATTATGTTTTCCGTTGAGTTCCTTCGATTCGCTGGAGTCCTCCTTTCGCTTTTTTCCGGGAGTTCCTTTGGCCATACATGAAATTTTCAGAGTAATCATGGTTGCAGGTGAAAAGGAAATGCAACAGATTTGTTGGGCTGTTGATTCCATGAATAATTGA

Coding sequence (CDS)

ATGCTTCCTGATTTTTCTGGCCGTGACTGTGAATTATGTTTTCCGTTGAGTTCCTTCGATTCGCTGGAGTCCTCCTTTCGCTTTTTTCCGGGAGTTCCTTTGGCCATACATGAAATTTTCAGAGTAATCATGGTTGCAGGTGAAAAGGAAATGCAACAGATTTGTTGGGCTGTTGATTCCATGAATAATTGA

Protein sequence

MLPDFSGRDCELCFPLSSFDSLESSFRFFPGVPLAIHEIFRVIMVAGEKEMQQICWAVDSMNN
Homology
[Close]
BLAST of Lsi01G003170 vs. TrEMBL
Match: A0A0A0KI29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517360 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.3e-09
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 1 

Query: 4  DFSGRDCELCFPLSSFDSLESSFRFFPGVPLAIHEIF 41
          DFSGRDCELCFPLSSF+ L SSFRF P VPLAIHE F
Sbjct: 15 DFSGRDCELCFPLSSFNFLVSSFRFIPEVPLAIHEKF 51

[Close]
BLAST of Lsi01G003170 vs. NCBI nr
Match: gi|700194024|gb|KGN49228.1| (hypothetical protein Csa_6G517360 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 1 

Query: 4  DFSGRDCELCFPLSSFDSLESSFRFFPGVPLAIHEIF 41
          DFSGRDCELCFPLSSF+ L SSFRF P VPLAIHE F
Sbjct: 15 DFSGRDCELCFPLSSFNFLVSSFRFIPEVPLAIHEKF 51

The following BLAST results are available for this feature:
BLAST of Lsi01G003170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi01G003170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KI29_CUCSA9.3e-0983.78Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517360 PE=4 SV=1[more]
BLAST of Lsi01G003170 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi01G003170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194024|gb|KGN49228.1|1.3e-0883.78hypothetical protein Csa_6G517360 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G003170.1Lsi01G003170.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi01G003170Csa6G517360Cucumber (Chinese Long) v2culsiB434
Lsi01G003170CsaV3_6G050140Cucumber (Chinese Long) v3cuclsiB462
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G003170Watermelon (97103) v2lsiwmbB115
Lsi01G003170Watermelon (97103) v2lsiwmbB121
Lsi01G003170Wax gourdlsiwgoB168
Lsi01G003170Wax gourdlsiwgoB201
Lsi01G003170Bottle gourd (USVL1VR-Ls)lsilsiB066
Lsi01G003170Cucumber (Gy14) v1cgylsiB022
Lsi01G003170Cucumber (Gy14) v1cgylsiB183
Lsi01G003170Cucumber (Gy14) v1cgylsiB193
Lsi01G003170Cucurbita maxima (Rimu)cmalsiB014
Lsi01G003170Cucurbita maxima (Rimu)cmalsiB199
Lsi01G003170Cucurbita maxima (Rimu)cmalsiB368
Lsi01G003170Cucurbita maxima (Rimu)cmalsiB408
Lsi01G003170Cucurbita maxima (Rimu)cmalsiB477
Lsi01G003170Cucurbita maxima (Rimu)cmalsiB602
Lsi01G003170Cucurbita maxima (Rimu)cmalsiB786
Lsi01G003170Cucurbita moschata (Rifu)cmolsiB003
Lsi01G003170Cucurbita moschata (Rifu)cmolsiB189
Lsi01G003170Cucurbita moschata (Rifu)cmolsiB354
Lsi01G003170Cucurbita moschata (Rifu)cmolsiB394
Lsi01G003170Cucurbita moschata (Rifu)cmolsiB588
Lsi01G003170Cucurbita moschata (Rifu)cmolsiB774
Lsi01G003170Cucurbita pepo (Zucchini)cpelsiB023
Lsi01G003170Cucurbita pepo (Zucchini)cpelsiB049
Lsi01G003170Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G003170Cucurbita pepo (Zucchini)cpelsiB415
Lsi01G003170Wild cucumber (PI 183967)cpilsiB018
Lsi01G003170Wild cucumber (PI 183967)cpilsiB256
Lsi01G003170Wild cucumber (PI 183967)cpilsiB439
Lsi01G003170Cucumber (Chinese Long) v2culsiB019
Lsi01G003170Cucumber (Chinese Long) v2culsiB257
Lsi01G003170Melon (DHL92) v3.5.1lsimeB127
Lsi01G003170Melon (DHL92) v3.5.1lsimeB149
Lsi01G003170Watermelon (Charleston Gray)lsiwcgB123
Lsi01G003170Watermelon (Charleston Gray)lsiwcgB127
Lsi01G003170Watermelon (97103) v1lsiwmB144
Lsi01G003170Watermelon (97103) v1lsiwmB167
Lsi01G003170Cucumber (Gy14) v2cgyblsiB015
Lsi01G003170Cucumber (Gy14) v2cgyblsiB398
Lsi01G003170Melon (DHL92) v3.6.1lsimedB138
Lsi01G003170Melon (DHL92) v3.6.1lsimedB156
Lsi01G003170Silver-seed gourdcarlsiB132
Lsi01G003170Silver-seed gourdcarlsiB585
Lsi01G003170Silver-seed gourdcarlsiB496
Lsi01G003170Silver-seed gourdcarlsiB865
Lsi01G003170Cucumber (Chinese Long) v3cuclsiB020