Lsi01G003030 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G003030
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionSquamosa promoter-binding protein 1
Locationchr01 : 2710725 .. 2713540 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAGTTTATAATTATATATATATAGTCATGTGGTTCTAAGGTTCTCCACATATAAGCCTTCTCTGCAAAATGGCAAACTCAGAAGATCAAGGTTGGGACGACACGACGGTGGAAGAAGAAGACGACGACAACGATAACGAAGAAATAGGGTTAGTAGAAGATGAAAGGAGGAGGAGATCAGCTTTAACCGGTGGTCGAGGTGGCAGCGGAGGAGGGAGGTCAACGGTGGCGCGTTGCCAAGCCGATGGCTGCAATGCCGATCTGAGCGGTGCCAGACCATACCACCGCCGCCACAAGGTCTGCGAGTTCCATGCCAAGGAGGCGGCGGTGATTCTGGCCGGGTTGGAACAGCGATTTTGCCAGCAGTGTAGTAGGTGAGAAAGATTTTTTTTAATTAATTTATTTAAAATTATTGAATAATACCCTAATCTGGATCTGTTAAATTATTTGATTTAAAGCTGAATTTTGATTATTTTTCTTCTGTTTCAAAATAGTTTAAGAAATGTACCAAAACTGGAAATGTTTAATTTGGTTAATTTTCTGTGTGTAGAAATTTGTGGAAATAAATCTTGAATAAGTATATATACATTCTACTAGAGTGTGTTTGGAAACCCTTTTTTCCCTTCTAATTCTAAGATTATTTTCAACTAATTTGATCAGAATATATTTGGACTACTTTTGAGTACTTTTTTTTTTTCCTTTTTAACCAAAGTGTTTCACTATATATGGAATAATTTTTTTGTTGAAAAATTCATAAGTATTCTATTAGTGGAAAAAAAAATTCACTTACACACTACAGTGAATCAATTCTTTTTTGAATTTTGTAATTGAATATTAACTTTTTATATCAATAATTATATTTATTTAAAAAAAAATTGTGGTCAATGGTGATTAGTGTCACTAAGTGATTTTACTACTATATTAATTTATTTTCAATCAAGATATAGTAAAATTCCCACCACTAAAGTTATGGAGTATGAAAGTGTGTATGCTAGGTTAACCATCACTGATTTCAAACGCTTAAACTAATGGATTAAGATTCGCTTTATTTCTAATGATGTTGATTTACCTATTTACCTATGAAACAAAATAAGTTTGTTTAAAGGGGGTAAATTGATTTTTTTCCCCTCTCTTTAGGAAAAAAAAGAATTGAAATTGTTTAAGGGATGTTTTACATTATTACTATATAAGTGAAATTTATGAGTAATCTTAGTTCTAAACTTTTAATTTTCATTCACTTAATCTTAAGCGAGTGGTACAAAAATTAATATTCTCAATGATTTGAACTTTCACGATCTTAAAAGAAAATGTGAAAATGTTGTTTGTGTGATTGGTGAGACTATTCATTTTAGTGTCTAACCCTTTAAATTGAATATTTTTTTTTAAATTTTCATTAATATAACAAGGTTTTGATTTTTTTTTTGTTGGGAAAAGTTAAATTGAGTTGATTTTTATATTAATGTTAAGATATTATTTTAGTATATGTTTATAATTTTTCAATAAATCTTAAATTGAGTTGTATATTATTAAAGGAAAATTTTTAAAATAGAAAAATAAGAAAAATTATTTACACAAAATAGCAAAATTTTTAGATAGTTGTGATAAACGCTGATAGAAATCTATTTGGGTTTATCCGTGATATAAATGATAGAAGCCTATTACTGATAGATGGTGATAGAAGTCTATCGATGTCTATCAATATTTTTTTTTTGCTATTTTCTGTAAATAGTTAAATATTTTTTCTATTTGTGAAAATTTTCCTTATTACAAGGTGAATAAGTTATATATAATAGAATGATAATAAAGAAAAATTAGAGGGAGTAAATATGAAAGTATGATAAAGTAAAAGGATTAAAAATGGAATATATATGAATGGATAAGAAGAAGGGATAATAATTAATATTAGGGACATTTTTACAAATAGAAAAAATGTTAAAATCTTTACAGAAAATAGTAAAAAAAAAAACATTGATAGATATTGATAGACTTCTATTGGCATCTATATATCAGTGATAACTTCTATCATTTCTATCACTAATAGCTTCTATCAACATCTAAACTATATAAAAATTTTGCTATTTTCTATAAATAGTTCCTCTTATTTTTATATTTTTCAAAATTTCCCTTAATATTATAATTGAAAAGGCTGAATTAAATTAAATATTGGATGGGAAATGGAATGGAGATGGTTTTGTTGTATTATTATGACAGGTTTCATGCAGTATCAGAGTTCGATGACACAAAGAGAAGCTGCCGGAGGCGTTTGGCTGGTCACAATGAACGCCGCCGCAAAATCCTACCGGACTTCCACGGACAATCCTCCGCTAATTAATTGACCACACATTAATTAACAATAATACTACTCCTTAATTACTAAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGGAAGAGCGTTATTGGAGTTTTGTTCTGGGAGAGGGTCACCAGTCACCGGTCACCGGCCACCGTCATGGAAAATGAATTTTGTGCTCTCTCTCTTCTGTCAAAAGAAAAACCCAAGTTAGCCTCTTTTTTACTGCTTTGGTTTTCTTATATTTCTGTTTCATCTATGTAAGTTAAGCTCTGTTCAATTAGACTAAGCTTTTCATAATATTTAGTAAAATACTTAAATGCATCCAACTATATTTATTTTTGTGCATCTACCACTCTTATATTTATATAATAAAGAGATGGTTAGCCTAAAATAAATAAATAAATAAAGAGATGGTTGCTAGTTGCTACACTTTTTGCCTCGATCACATCACTTAAATCTCTGTGGGATTTTTTAAACAATCTATCTTGTAAGGAAGCCGGC

mRNA sequence

CTAGTTTATAATTATATATATATAGTCATGTGGTTCTAAGGTTCTCCACATATAAGCCTTCTCTGCAAAATGGCAAACTCAGAAGATCAAGGTTGGGACGACACGACGGTGGAAGAAGAAGACGACGACAACGATAACGAAGAAATAGGGTTAGTAGAAGATGAAAGGAGGAGGAGATCAGCTTTAACCGGTGGTCGAGGTGGCAGCGGAGGAGGGAGGTCAACGGTGGCGCGTTGCCAAGCCGATGGCTGCAATGCCGATCTGAGCGGTGCCAGACCATACCACCGCCGCCACAAGGTCTGCGAGTTCCATGCCAAGGAGGCGGCGGTGATTCTGGCCGGGTTGGAACAGCGATTTTGCCAGCAGTGTAGTAGTAAAATTCCCACCACTAAAGTTATGGAGTATGAAAGTGTGTATGCTAGGTTTCATGCAGTATCAGAGTTCGATGACACAAAGAGAAGCTGCCGGAGGCGTTTGGCTGGTCACAATGAACGCCGCCGCAAAATCCTACCGGACTTCCACGGACAATCCTCCGCTAATTAATTGACCACACATTAATTAACAATAATACTACTCCTTAATTACTAAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGGAAGAGCGTTATTGGAGTTTTGTTCTGGGAGAGGGTCACCAGTCACCGGTCACCGGCCACCGTCATGGAAAATGAATTTTGTGCTCTCTCTCTTCTGTCAAAAGAAAAACCCAAGTTAGCCTCTTTTTTACTGCTTTGGTTTTCTTATATTTCTGTTTCATCTATGTAAGTTAAGCTCTGTTCAATTAGACTAAGCTTTTCATAATATTTAGTAAAATACTTAAATGCATCCAACTATATTTATTTTTGTGCATCTACCACTCTTATATTTATATAATAAAGAGATGGTTAGCCTAAAATAAATAAATAAATAAAGAGATGGTTGCTAGTTGCTACACTTTTTGCCTCGATCACATCACTTAAATCTCTGTGGGATTTTTTAAACAATCTATCTTGTAAGGAAGCCGGC

Coding sequence (CDS)

ATGGCAAACTCAGAAGATCAAGGTTGGGACGACACGACGGTGGAAGAAGAAGACGACGACAACGATAACGAAGAAATAGGGTTAGTAGAAGATGAAAGGAGGAGGAGATCAGCTTTAACCGGTGGTCGAGGTGGCAGCGGAGGAGGGAGGTCAACGGTGGCGCGTTGCCAAGCCGATGGCTGCAATGCCGATCTGAGCGGTGCCAGACCATACCACCGCCGCCACAAGGTCTGCGAGTTCCATGCCAAGGAGGCGGCGGTGATTCTGGCCGGGTTGGAACAGCGATTTTGCCAGCAGTGTAGTAGTAAAATTCCCACCACTAAAGTTATGGAGTATGAAAGTGTGTATGCTAGGTTTCATGCAGTATCAGAGTTCGATGACACAAAGAGAAGCTGCCGGAGGCGTTTGGCTGGTCACAATGAACGCCGCCGCAAAATCCTACCGGACTTCCACGGACAATCCTCCGCTAATTAA

Protein sequence

MANSEDQGWDDTTVEEEDDDNDNEEIGLVEDERRRRSALTGGRGGSGGGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKEAAVILAGLEQRFCQQCSSKIPTTKVMEYESVYARFHAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSSAN
Homology
[Close]
BLAST of Lsi01G003030 vs. Swiss-Prot
Match: SBP1_ANTMA (Squamosa promoter-binding protein 1 OS=Antirrhinum majus GN=SBP1 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.1e-27
Identity = 74/151 (49.01%), Postives = 91/151 (60.26%), Query Frame = 1 

Query: 1   MANSEDQGWDDTTVEEEDDDNDNEEIGLVEDERRRRSALTGGRGGSGGGRSTVARCQADG 60
           +  S++QG      EEEDD      IG  ED ++ R+    G+  SG   ST   CQ + 
Sbjct: 14  LPGSQEQG------EEEDD------IG--EDSKKTRALTPSGKRASG---STQRSCQVEN 73

Query: 61  CNADLSGARPYHRRHKVCEFHAKEAAVILAGLEQRFCQQCSSKIPTTKVMEYESVYARFH 120
           C A+++ A+PYHRRHKVCEFHAK   V+ +GL+QRFCQQCS                RFH
Sbjct: 74  CAAEMTNAKPYHRRHKVCEFHAKAPVVLHSGLQQRFCQQCS----------------RFH 131

Query: 121 AVSEFDDTKRSCRRRLAGHNERRRKILPDFH 152
            +SEFD+ KRSCRRRLAGHNERRRK   D H
Sbjct: 134 ELSEFDEAKRSCRRRLAGHNERRRKSSHDTH 131

[Close]
BLAST of Lsi01G003030 vs. Swiss-Prot
Match: SPL5_ORYSJ (Squamosa promoter-binding-like protein 5 OS=Oryza sativa subsp. japonica GN=SPL5 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-25
Identity = 60/101 (59.41%), Postives = 69/101 (68.32%), Query Frame = 1 

Query: 55  RCQADGCNADLSGARPYHRRHKVCEFHAKEAAVILAGLEQRFCQQCSSKIPTTKVMEYES 114
           RCQA+GC ADLS A+ YHRRHKVC+FHAK AAV+ AG +QRFCQQCS             
Sbjct: 206 RCQAEGCKADLSAAKHYHRRHKVCDFHAKAAAVLAAGKQQRFCQQCS------------- 265

Query: 115 VYARFHAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSS 156
              RFH ++EFD+ KRSCR+RL  HN RRRK  P   GQSS
Sbjct: 266 ---RFHVLAEFDEAKRSCRKRLTEHNRRRRK--PTAGGQSS 288

[Close]
BLAST of Lsi01G003030 vs. Swiss-Prot
Match: SPL17_ORYSJ (Squamosa promoter-binding-like protein 17 OS=Oryza sativa subsp. japonica GN=SPL17 PE=2 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-25
Identity = 63/120 (52.50%), Postives = 72/120 (60.00%), Query Frame = 1 

Query: 37  SALTGGRGGSGGGRSTVA--------RCQADGCNADLSGARPYHRRHKVCEFHAKEAAVI 96
           S  +GG G  G G +  A        RCQ +GC  DLSG +PY+ RHKVC  HAKE  V+
Sbjct: 47  STSSGGGGKKGKGVAAAAAPPPPLPPRCQVEGCGVDLSGVKPYYCRHKVCYMHAKEPIVV 106

Query: 97  LAGLEQRFCQQCSSKIPTTKVMEYESVYARFHAVSEFDDTKRSCRRRLAGHNERRRKILP 149
           +AGLEQRFCQQCS                RFH + EFD  K+SCRRRLAGHNERRRK  P
Sbjct: 107 VAGLEQRFCQQCS----------------RFHQLPEFDQEKKSCRRRLAGHNERRRKPTP 150

[Close]
BLAST of Lsi01G003030 vs. Swiss-Prot
Match: SPL19_ORYSJ (Putative squamosa promoter-binding-like protein 19 OS=Oryza sativa subsp. japonica GN=SPL19 PE=3 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-25
Identity = 59/105 (56.19%), Postives = 66/105 (62.86%), Query Frame = 1 

Query: 41  GGRGGSGGGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKEAAVILAGLEQRFCQQC 100
           GG GG GGG      C  DGC +DLS  R YHRRHKVCE HAK   V++AG EQRFCQQC
Sbjct: 78  GGSGGGGGGGGGAEACSVDGCRSDLSRCRDYHRRHKVCEAHAKTPVVVVAGQEQRFCQQC 137

Query: 101 SSKIPTTKVMEYESVYARFHAVSEFDDTKRSCRRRLAGHNERRRK 146
           S                RFH ++EFDD K+SCR+RL GHN RRRK
Sbjct: 138 S----------------RFHNLAEFDDGKKSCRKRLDGHNRRRRK 166

[Close]
BLAST of Lsi01G003030 vs. Swiss-Prot
Match: SPL10_ORYSI (Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. indica GN=SPL10 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.1e-25
Identity = 64/119 (53.78%), Postives = 74/119 (62.18%), Query Frame = 1 

Query: 28  LVEDERRRRSALTGGRG-GSGGGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKEAA 87
           L  D    RS L G  G G GG      RCQA+GC ADLSGA+ YHRRHKVCE+HAK + 
Sbjct: 152 LAVDRLLMRSRLGGVFGLGFGGAHHQPPRCQAEGCKADLSGAKHYHRRHKVCEYHAKASV 211

Query: 88  VILAGLEQRFCQQCSSKIPTTKVMEYESVYARFHAVSEFDDTKRSCRRRLAGHNERRRK 146
           V  +G +QRFCQQCS                RFH ++EFD+ KRSCR+RLA HN RRRK
Sbjct: 212 VAASGKQQRFCQQCS----------------RFHVLTEFDEAKRSCRKRLAEHNRRRRK 254

[Close]
BLAST of Lsi01G003030 vs. TrEMBL
Match: A0A0A0KK74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517960 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.8e-59
Identity = 119/157 (75.80%), Postives = 130/157 (82.80%), Query Frame = 1 

Query: 1   MANSEDQGWDDTTVEEEDDDNDNEEIGLVEDERRRRSALTGGRGGSGGGRSTVARCQADG 60
           MANSEDQGW+D  V+++DDDNDNEEIG V++ERRRRS LT  RGG GGGRSTVARCQADG
Sbjct: 1   MANSEDQGWEDMIVDDDDDDNDNEEIGFVDNERRRRSGLTSARGGGGGGRSTVARCQADG 60

Query: 61  CNADLSGARPYHRRHKVCEFHAKEAAVILAGLEQRFCQQCSSKIPTTKVMEYESVYARFH 120
           CNADL+GA+PYHRRHKVCEFH++ A VILAGLEQRFCQQCS                RFH
Sbjct: 61  CNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCS----------------RFH 120

Query: 121 AVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSSAN 158
           A+SEFDDTKRSCR RLAGHNERRRKILPDFHGQSS N
Sbjct: 121 ALSEFDDTKRSCRMRLAGHNERRRKILPDFHGQSSTN 141

[Close]
BLAST of Lsi01G003030 vs. TrEMBL
Match: D7TJB9_VITVI (Squamosa promoter-binding-like protein OS=Vitis vinifera GN=VIT_10s0003g00050 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.9e-31
Identity = 77/156 (49.36%), Postives = 99/156 (63.46%), Query Frame = 1 

Query: 1   MANSEDQGWDDTTVEEEDDDNDNEEIGLVEDERRRRSALTGGRGGSGGGRSTVARCQADG 60
           M  S+ QG      EEE+DD D   +G  EDE+++++     + GSGG  ST   CQ D 
Sbjct: 1   MEMSKAQGKRTLMEEEEEDDEDTVGLGFGEDEKKKKAVTLTNKKGSGGAGSTPPSCQVDN 60

Query: 61  CNADLSGARPYHRRHKVCEFHAKEAAVILAGLEQRFCQQCSSKIPTTKVMEYESVYARFH 120
           C AD+S A+ YH+RH+VCE HAK   +++AG++QRFCQQCS                RFH
Sbjct: 61  CTADMSEAKRYHKRHRVCEHHAKAPVILIAGIQQRFCQQCS----------------RFH 120

Query: 121 AVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSSA 157
            +SEFDDTKRSCRRRLAGHNERRRK   + HG+ S+
Sbjct: 121 ELSEFDDTKRSCRRRLAGHNERRRKSSSESHGEGSS 140

[Close]
BLAST of Lsi01G003030 vs. TrEMBL
Match: A0A151RAJ5_CAJCA (Squamosa promoter-binding-like protein OS=Cajanus cajan GN=KK1_039149 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.6e-30
Identity = 80/144 (55.56%), Postives = 95/144 (65.97%), Query Frame = 1 

Query: 15  EEEDDDNDNEE---IGLVEDERRRRSALTG--GRGGSGGGRSTVARCQADGCNADLSGAR 74
           EEED+D + EE   +G  ED RR + A+T   G+ GS GG S    CQ D C+ADLS A+
Sbjct: 15  EEEDEDEEEEEEIEMGFGEDGRRNKRAMTDLYGKRGSKGGSSMPPSCQVDNCDADLSEAK 74

Query: 75  PYHRRHKVCEFHAKEAAVILAGLEQRFCQQCSSKIPTTKVMEYESVYARFHAVSEFDDTK 134
            YHRRHKVCE+HAK  +V +AGL+QRFCQQCS                RFH +SEFDDTK
Sbjct: 75  QYHRRHKVCEYHAKAHSVHMAGLQQRFCQQCS----------------RFHELSEFDDTK 134

Query: 135 RSCRRRLAGHNERRRKILPDFHGQ 154
           RSCR RLAGHNERRRK   D+ G+
Sbjct: 135 RSCRTRLAGHNERRRKNAADYQGE 142

[Close]
BLAST of Lsi01G003030 vs. TrEMBL
Match: A0A151RZ83_CAJCA (Squamosa promoter-binding protein 1 OS=Cajanus cajan GN=KK1_030481 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.7e-30
Identity = 75/138 (54.35%), Postives = 91/138 (65.94%), Query Frame = 1 

Query: 15  EEEDDDNDNEEIGLVEDERRRRSALTGGRGGSGGGRSTVARCQADGCNADLSGARPYHRR 74
           EE +++ + E  G  ED+R++R   T  + GS  G S    CQ DGCNADLS A+PYHRR
Sbjct: 7   EEYEEEEEEESEGYGEDDRKKRVVTT--KRGSKAGGSVPPSCQVDGCNADLSDAKPYHRR 66

Query: 75  HKVCEFHAKEAAVILAGLEQRFCQQCSSKIPTTKVMEYESVYARFHAVSEFDDTKRSCRR 134
           HKVCE+HAK  AV++A   QRFCQQCS                RFH +SEFDD+KRSCRR
Sbjct: 67  HKVCEYHAKAPAVLIADQHQRFCQQCS----------------RFHELSEFDDSKRSCRR 126

Query: 135 RLAGHNERRRKILPDFHG 153
           RLAGHNERRRK   ++HG
Sbjct: 127 RLAGHNERRRKNASEYHG 126

[Close]
BLAST of Lsi01G003030 vs. TrEMBL
Match: A0A0B2Q6M9_GLYSO (Squamosa promoter-binding-like protein OS=Glycine soja GN=glysoja_038143 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.7e-30
Identity = 79/145 (54.48%), Postives = 93/145 (64.14%), Query Frame = 1 

Query: 15  EEEDDDNDNEEI---GLVEDERRRRSA---LTGGRGGSGGGRSTVARCQADGCNADLSGA 74
           +E DDD + EE+   G  ED RR +     L G R GS GG S    CQ D C+ADLS A
Sbjct: 18  DENDDDEEEEEVSEVGFGEDRRRNKRVMRDLHGKRSGSKGGGSMPPSCQVDNCDADLSEA 77

Query: 75  RPYHRRHKVCEFHAKEAAVILAGLEQRFCQQCSSKIPTTKVMEYESVYARFHAVSEFDDT 134
           + YHRRHKVCE+HAK  +V +AGL+QRFCQQCS                RFH +SEFDD+
Sbjct: 78  KQYHRRHKVCEYHAKAPSVHMAGLQQRFCQQCS----------------RFHELSEFDDS 137

Query: 135 KRSCRRRLAGHNERRRKILPDFHGQ 154
           KRSCR RLAGHNERRRK   D+HG+
Sbjct: 138 KRSCRTRLAGHNERRRKNAVDYHGE 146

[Close]
BLAST of Lsi01G003030 vs. TAIR10
Match: AT1G02065.1 (AT1G02065.1 squamosa promoter binding protein-like 8)

HSP 1 Score: 114.4 bits (285), Expect = 6.4e-26
Identity = 61/104 (58.65%), Postives = 69/104 (66.35%), Query Frame = 1 

Query: 42  GRGGSGGGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKEAAVILAGLEQRFCQQCS 101
           G  G     ST  RCQA+GCNADLS A+ YHRRHKVCEFH+K + V+ AGL QRFCQQCS
Sbjct: 175 GESGMANSLST-PRCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGLSQRFCQQCS 234

Query: 102 SKIPTTKVMEYESVYARFHAVSEFDDTKRSCRRRLAGHNERRRK 146
                           RFH +SEFD+ KRSCR+RLA HN RRRK
Sbjct: 235 ----------------RFHLLSEFDNGKRSCRKRLADHNRRRRK 261

[Close]
BLAST of Lsi01G003030 vs. TAIR10
Match: AT2G33810.1 (AT2G33810.1 squamosa promoter binding protein-like 3)

HSP 1 Score: 111.3 bits (277), Expect = 5.4e-25
Identity = 64/135 (47.41%), Postives = 79/135 (58.52%), Query Frame = 1 

Query: 15  EEEDDDNDNEEIGLVEDERRRRSALTGGRGGSGGGRSTVARCQADGCNADLSGARPYHRR 74
           EEE+++ + E+    E+E        G    S G       CQ + C AD+S A+ YH+R
Sbjct: 19  EEEEEEEETEDEDTFEEEEALEKKQKGKATSSSGV------CQVESCTADMSKAKQYHKR 78

Query: 75  HKVCEFHAKEAAVILAGLEQRFCQQCSSKIPTTKVMEYESVYARFHAVSEFDDTKRSCRR 134
           HKVC+FHAK   V ++GL QRFCQQCS                RFHA+SEFD+ KRSCRR
Sbjct: 79  HKVCQFHAKAPHVRISGLHQRFCQQCS----------------RFHALSEFDEAKRSCRR 131

Query: 135 RLAGHNERRRKILPD 150
           RLAGHNERRRK   D
Sbjct: 139 RLAGHNERRRKSTTD 131

[Close]
BLAST of Lsi01G003030 vs. TAIR10
Match: AT3G60030.1 (AT3G60030.1 squamosa promoter-binding protein-like 12)

HSP 1 Score: 110.9 bits (276), Expect = 7.1e-25
Identity = 63/143 (44.06%), Postives = 76/143 (53.15%), Query Frame = 1 

Query: 24  EEIGLVEDERRRRSALTGGRGGSGGG----------RSTVARCQADGCNADLSGARPYHR 83
           EE  L +D+  R +   GG    G G           S    CQ D C ADLS  + YHR
Sbjct: 85  EEDNLKDDDAHRLTLNLGGNNIEGNGVKKTKLGGGIPSRAICCQVDNCGADLSKVKDYHR 144

Query: 84  RHKVCEFHAKEAAVILAGLEQRFCQQCSSKIPTTKVMEYESVYARFHAVSEFDDTKRSCR 143
           RHKVCE H+K    ++ G+ QRFCQQCS                RFH + EFD+ KRSCR
Sbjct: 145 RHKVCEIHSKATTALVGGIMQRFCQQCS----------------RFHVLEEFDEGKRSCR 204

Query: 144 RRLAGHNERRRKILPDFHGQSSA 157
           RRLAGHN+RRRK  PD  G  ++
Sbjct: 205 RRLAGHNKRRRKANPDTIGNGTS 211

[Close]
BLAST of Lsi01G003030 vs. TAIR10
Match: AT1G53160.2 (AT1G53160.2 squamosa promoter binding protein-like 4)

HSP 1 Score: 108.6 bits (270), Expect = 3.5e-24
Identity = 70/144 (48.61%), Postives = 86/144 (59.72%), Query Frame = 1 

Query: 4   SEDQGW--DDTTVEEEDDDNDNEEIGLVEDERRRRSALTGGRGGSGGGRSTVARCQADGC 63
           S+ QG+    + + EED + D +E   V  +R R S  +  RGGS      +  CQ D C
Sbjct: 6   SQGQGYMKKKSYLVEEDMETDTDEEEEVGRDRVRGSRGSINRGGS------LRLCQVDRC 65

Query: 64  NADLSGARPYHRRHKVCEFHAKEAAVILAGLEQRFCQQCSSKIPTTKVMEYESVYARFHA 123
            AD+  A+ YHRRHKVCE HAK ++V L+GL QRFCQQCS                RFH 
Sbjct: 66  TADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCS----------------RFHD 125

Query: 124 VSEFDDTKRSCRRRLAGHNERRRK 146
           + EFD+ KRSCRRRLAGHNERRRK
Sbjct: 126 LQEFDEAKRSCRRRLAGHNERRRK 127

[Close]
BLAST of Lsi01G003030 vs. TAIR10
Match: AT2G42200.1 (AT2G42200.1 squamosa promoter binding protein-like 9)

HSP 1 Score: 107.5 bits (267), Expect = 7.8e-24
Identity = 55/106 (51.89%), Postives = 65/106 (61.32%), Query Frame = 1 

Query: 43  RGGSGGGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKEAAVILAGLEQRFCQQCSS 102
           RGG  G    + RCQ +GC  DL+ A+ Y+ RH+VC  H+K   V +AG+EQRFCQQCS 
Sbjct: 61  RGGGSGQSGQIPRCQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVTVAGIEQRFCQQCS- 120

Query: 103 KIPTTKVMEYESVYARFHAVSEFDDTKRSCRRRLAGHNERRRKILP 149
                          RFH + EFD  KRSCRRRLAGHNERRRK  P
Sbjct: 121 ---------------RFHQLPEFDLEKRSCRRRLAGHNERRRKPQP 150

[Close]
BLAST of Lsi01G003030 vs. NCBI nr
Match: gi|449434338|ref|XP_004134953.1| (PREDICTED: squamosa promoter-binding protein 1 [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 5.4e-59
Identity = 119/157 (75.80%), Postives = 130/157 (82.80%), Query Frame = 1 

Query: 1   MANSEDQGWDDTTVEEEDDDNDNEEIGLVEDERRRRSALTGGRGGSGGGRSTVARCQADG 60
           MANSEDQGW+D  V+++DDDNDNEEIG V++ERRRRS LT  RGG GGGRSTVARCQADG
Sbjct: 1   MANSEDQGWEDMIVDDDDDDNDNEEIGFVDNERRRRSGLTSARGGGGGGRSTVARCQADG 60

Query: 61  CNADLSGARPYHRRHKVCEFHAKEAAVILAGLEQRFCQQCSSKIPTTKVMEYESVYARFH 120
           CNADL+GA+PYHRRHKVCEFH++ A VILAGLEQRFCQQCS                RFH
Sbjct: 61  CNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCS----------------RFH 120

Query: 121 AVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSSAN 158
           A+SEFDDTKRSCR RLAGHNERRRKILPDFHGQSS N
Sbjct: 121 ALSEFDDTKRSCRMRLAGHNERRRKILPDFHGQSSTN 141

[Close]
BLAST of Lsi01G003030 vs. NCBI nr
Match: gi|659078661|ref|XP_008439842.1| (PREDICTED: squamosa promoter-binding protein 1 [Cucumis melo])

HSP 1 Score: 227.3 bits (578), Expect = 1.9e-56
Identity = 118/158 (74.68%), Postives = 127/158 (80.38%), Query Frame = 1 

Query: 1   MANSEDQGWDDTTVEEEDDD-NDNEEIGLVEDERRRRSALTGGRGGSGGGRSTVARCQAD 60
           MANS D  W+D  ++++DDD ND EE+G V++ERRRRS LT GRGG GGGRSTVARCQAD
Sbjct: 1   MANSNDHSWEDMILDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQAD 60

Query: 61  GCNADLSGARPYHRRHKVCEFHAKEAAVILAGLEQRFCQQCSSKIPTTKVMEYESVYARF 120
           GCNADL+GARPYHRRHKVCEFHAK A VILAGLEQRFCQQCS                RF
Sbjct: 61  GCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCS----------------RF 120

Query: 121 HAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSSAN 158
           HAVSEFDDTKRSCR RLAGHNERRRKILPDFHGQSS N
Sbjct: 121 HAVSEFDDTKRSCRSRLAGHNERRRKILPDFHGQSSTN 142

[Close]
BLAST of Lsi01G003030 vs. NCBI nr
Match: gi|225443638|ref|XP_002280052.1| (PREDICTED: squamosa promoter-binding protein 1 isoform X2 [Vitis vinifera])

HSP 1 Score: 143.7 bits (361), Expect = 2.8e-31
Identity = 77/156 (49.36%), Postives = 99/156 (63.46%), Query Frame = 1 

Query: 1   MANSEDQGWDDTTVEEEDDDNDNEEIGLVEDERRRRSALTGGRGGSGGGRSTVARCQADG 60
           M  S+ QG      EEE+DD D   +G  EDE+++++     + GSGG  ST   CQ D 
Sbjct: 1   MEMSKAQGKRTLMEEEEEDDEDTVGLGFGEDEKKKKAVTLTNKKGSGGAGSTPPSCQVDN 60

Query: 61  CNADLSGARPYHRRHKVCEFHAKEAAVILAGLEQRFCQQCSSKIPTTKVMEYESVYARFH 120
           C AD+S A+ YH+RH+VCE HAK   +++AG++QRFCQQCS                RFH
Sbjct: 61  CTADMSEAKRYHKRHRVCEHHAKAPVILIAGIQQRFCQQCS----------------RFH 120

Query: 121 AVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSSA 157
            +SEFDDTKRSCRRRLAGHNERRRK   + HG+ S+
Sbjct: 121 ELSEFDDTKRSCRRRLAGHNERRRKSSSESHGEGSS 140

[Close]
BLAST of Lsi01G003030 vs. NCBI nr
Match: gi|731404450|ref|XP_010655440.1| (PREDICTED: squamosa promoter-binding protein 1 isoform X1 [Vitis vinifera])

HSP 1 Score: 140.6 bits (353), Expect = 2.4e-30
Identity = 76/156 (48.72%), Postives = 102/156 (65.38%), Query Frame = 1 

Query: 1   MANSEDQGWDDTTVEEEDDDNDNEEIGLVEDERRRRSALTGGRGGSGGGRSTVARCQADG 60
           M  S+ QG      EEE+DD D   +G  EDE+++++     + GSGG  ST   CQ D 
Sbjct: 1   MEMSKAQGKRTLMEEEEEDDEDTVGLGFGEDEKKKKAVTLTNKKGSGGAGSTPPSCQVDN 60

Query: 61  CNADLSGARPYHRRHKVCEFHAKEAAVILAGLEQRFCQQCSSKIPTTKVMEYESVYARFH 120
           C AD+S A+ YH+RH+VCE HAK   +++AG++QRFCQQC S++      +    +  FH
Sbjct: 61  CTADMSEAKRYHKRHRVCEHHAKAPVILIAGIQQRFCQQC-SRLGNPNFPK----HFWFH 120

Query: 121 AVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSSA 157
            +SEFDDTKRSCRRRLAGHNERRRK   + HG+ S+
Sbjct: 121 ELSEFDDTKRSCRRRLAGHNERRRKSSSESHGEGSS 151

[Close]
BLAST of Lsi01G003030 vs. NCBI nr
Match: gi|1012327844|gb|KYP39526.1| (Squamosa promoter-binding protein 1 [Cajanus cajan])

HSP 1 Score: 140.6 bits (353), Expect = 2.4e-30
Identity = 80/144 (55.56%), Postives = 95/144 (65.97%), Query Frame = 1 

Query: 15  EEEDDDNDNEE---IGLVEDERRRRSALTG--GRGGSGGGRSTVARCQADGCNADLSGAR 74
           EEED+D + EE   +G  ED RR + A+T   G+ GS GG S    CQ D C+ADLS A+
Sbjct: 15  EEEDEDEEEEEEIEMGFGEDGRRNKRAMTDLYGKRGSKGGSSMPPSCQVDNCDADLSEAK 74

Query: 75  PYHRRHKVCEFHAKEAAVILAGLEQRFCQQCSSKIPTTKVMEYESVYARFHAVSEFDDTK 134
            YHRRHKVCE+HAK  +V +AGL+QRFCQQCS                RFH +SEFDDTK
Sbjct: 75  QYHRRHKVCEYHAKAHSVHMAGLQQRFCQQCS----------------RFHELSEFDDTK 134

Query: 135 RSCRRRLAGHNERRRKILPDFHGQ 154
           RSCR RLAGHNERRRK   D+ G+
Sbjct: 135 RSCRTRLAGHNERRRKNAADYQGE 142

The following BLAST results are available for this feature:
BLAST of Lsi01G003030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SBP1_ANTMA7.1e-2749.01Squamosa promoter-binding protein 1 OS=Antirrhinum majus GN=SBP1 PE=2 SV=1[more]
SPL5_ORYSJ1.3e-2559.41Squamosa promoter-binding-like protein 5 OS=Oryza sativa subsp. japonica GN=SPL5... [more]
SPL17_ORYSJ3.9e-2552.50Squamosa promoter-binding-like protein 17 OS=Oryza sativa subsp. japonica GN=SPL... [more]
SPL19_ORYSJ3.9e-2556.19Putative squamosa promoter-binding-like protein 19 OS=Oryza sativa subsp. japoni... [more]
SPL10_ORYSI5.1e-2553.78Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. indica GN=SPL10... [more]
BLAST of Lsi01G003030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KK74_CUCSA3.8e-5975.80Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517960 PE=4 SV=1[more]
D7TJB9_VITVI1.9e-3149.36Squamosa promoter-binding-like protein OS=Vitis vinifera GN=VIT_10s0003g00050 PE... [more]
A0A151RAJ5_CAJCA1.6e-3055.56Squamosa promoter-binding-like protein OS=Cajanus cajan GN=KK1_039149 PE=4 SV=1[more]
A0A151RZ83_CAJCA3.7e-3054.35Squamosa promoter-binding protein 1 OS=Cajanus cajan GN=KK1_030481 PE=4 SV=1[more]
A0A0B2Q6M9_GLYSO3.7e-3054.48Squamosa promoter-binding-like protein OS=Glycine soja GN=glysoja_038143 PE=4 SV... [more]
BLAST of Lsi01G003030 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G02065.16.4e-2658.65 squamosa promoter binding protein-like 8[more]
AT2G33810.15.4e-2547.41 squamosa promoter binding protein-like 3[more]
AT3G60030.17.1e-2544.06 squamosa promoter-binding protein-like 12[more]
AT1G53160.23.5e-2448.61 squamosa promoter binding protein-like 4[more]
AT2G42200.17.8e-2451.89 squamosa promoter binding protein-like 9[more]
BLAST of Lsi01G003030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449434338|ref|XP_004134953.1|5.4e-5975.80PREDICTED: squamosa promoter-binding protein 1 [Cucumis sativus][more]
gi|659078661|ref|XP_008439842.1|1.9e-5674.68PREDICTED: squamosa promoter-binding protein 1 [Cucumis melo][more]
gi|225443638|ref|XP_002280052.1|2.8e-3149.36PREDICTED: squamosa promoter-binding protein 1 isoform X2 [Vitis vinifera][more]
gi|731404450|ref|XP_010655440.1|2.4e-3048.72PREDICTED: squamosa promoter-binding protein 1 isoform X1 [Vitis vinifera][more]
gi|1012327844|gb|KYP39526.1|2.4e-3055.56Squamosa promoter-binding protein 1 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR004333SBP_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009908 flower development
biological_process GO:0009886 post-embryonic animal morphogenesis
biological_process GO:0009860 pollen tube growth
biological_process GO:0009827 plant-type cell wall modification
biological_process GO:0048481 plant ovule development
biological_process GO:0048507 meristem development
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0048580 regulation of post-embryonic development
biological_process GO:0009741 response to brassinosteroid
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0010321 regulation of vegetative phase change
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009911 positive regulation of flower development
biological_process GO:0010229 inflorescence development
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G003030.1Lsi01G003030.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004333Transcription factor, SBP-boxGENE3DG3DSA:4.10.1100.10coord: 48..133
score: 7.6
IPR004333Transcription factor, SBP-boxPFAMPF03110SBPcoord: 117..145
score: 3.5E-9coord: 56..102
score: 2.5
IPR004333Transcription factor, SBP-boxPROFILEPS51141ZF_SBPcoord: 53..146
score: 27
IPR004333Transcription factor, SBP-boxunknownSSF103612SBT domaincoord: 54..150
score: 1.37
NoneNo IPR availablePANTHERPTHR31251FAMILY NOT NAMEDcoord: 118..157
score: 1.3E-61coord: 15..101
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi01G003030Csa1G074980Cucumber (Chinese Long) v2culsiB019
Lsi01G003030Csa6G517960Cucumber (Chinese Long) v2culsiB434
Lsi01G003030CSPI06G34740Wild cucumber (PI 183967)cpilsiB439
Lsi01G003030CSPI01G12250Wild cucumber (PI 183967)cpilsiB018
Lsi01G003030Cucsa.126820Cucumber (Gy14) v1cgylsiB193
Lsi01G003030Cucsa.046310Cucumber (Gy14) v1cgylsiB022
Lsi01G003030CmaCh07G002320Cucurbita maxima (Rimu)cmalsiB786
Lsi01G003030CmaCh13G006330Cucurbita maxima (Rimu)cmalsiB199
Lsi01G003030CmaCh18G003820Cucurbita maxima (Rimu)cmalsiB368
Lsi01G003030CmaCh09G008540Cucurbita maxima (Rimu)cmalsiB014
Lsi01G003030CmoCh18G003630Cucurbita moschata (Rifu)cmolsiB354
Lsi01G003030CmoCh09G008470Cucurbita moschata (Rifu)cmolsiB003
Lsi01G003030CmoCh07G002280Cucurbita moschata (Rifu)cmolsiB774
Lsi01G003030Cla009629Watermelon (97103) v1lsiwmB144
Lsi01G003030Cla023374Watermelon (97103) v1lsiwmB167
Lsi01G003030MELO3C002618Melon (DHL92) v3.5.1lsimeB127
Lsi01G003030MELO3C007273Melon (DHL92) v3.5.1lsimeB149
Lsi01G003030ClCG11G017960Watermelon (Charleston Gray)lsiwcgB123
Lsi01G003030ClCG01G023100Watermelon (Charleston Gray)lsiwcgB127
Lsi01G003030ClCG03G008110Watermelon (Charleston Gray)lsiwcgB133
Lsi01G003030MELO3C002618.2Melon (DHL92) v3.6.1lsimedB138
Lsi01G003030Cla97C11G223990Watermelon (97103) v2lsiwmbB121
Lsi01G003030Cla97C03G059410Watermelon (97103) v2lsiwmbB130
Lsi01G003030Cla97C01G022990Watermelon (97103) v2lsiwmbB115
Lsi01G003030Bhi09G002816Wax gourdlsiwgoB201
Lsi01G003030Bhi03G000305Wax gourdlsiwgoB168
Lsi01G003030Cp4.1LG20g04330Cucurbita pepo (Zucchini)cpelsiB415
Lsi01G003030CsGy6G034290Cucumber (Gy14) v2cgyblsiB398
Lsi01G003030Carg14616Silver-seed gourdcarlsiB132
Lsi01G003030Carg07774Silver-seed gourdcarlsiB585
Lsi01G003030Carg21509Silver-seed gourdcarlsiB865
Lsi01G003030CsaV3_6G050240Cucumber (Chinese Long) v3cuclsiB462
Lsi01G003030CsaV3_1G012440Cucumber (Chinese Long) v3cuclsiB020
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Lsi01G003030Lsi02G007690Bottle gourd (USVL1VR-Ls)lsilsiB066
The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G003030Cucumber (Gy14) v1cgylsiB183
Lsi01G003030Cucurbita maxima (Rimu)cmalsiB408
Lsi01G003030Cucurbita maxima (Rimu)cmalsiB477
Lsi01G003030Cucurbita maxima (Rimu)cmalsiB602
Lsi01G003030Cucurbita moschata (Rifu)cmolsiB189
Lsi01G003030Cucurbita moschata (Rifu)cmolsiB394
Lsi01G003030Cucurbita moschata (Rifu)cmolsiB588
Lsi01G003030Cucurbita pepo (Zucchini)cpelsiB023
Lsi01G003030Cucurbita pepo (Zucchini)cpelsiB049
Lsi01G003030Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G003030Wild cucumber (PI 183967)cpilsiB256
Lsi01G003030Cucumber (Chinese Long) v2culsiB257
Lsi01G003030Watermelon (97103) v1lsiwmB136
Lsi01G003030Cucumber (Gy14) v2cgyblsiB015
Lsi01G003030Melon (DHL92) v3.6.1lsimedB156
Lsi01G003030Silver-seed gourdcarlsiB496
Lsi01G003030Wax gourdlsiwgoB190