Lsi01G002930 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G002930
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	DNA polymerase IV
Location	chr01 : 2597224 .. 2604719 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAAGGTAAGAGATACATAGGATAAGAGAATTTTGGTTTAAAGTTTGAGATTGGACTTCAACTTTAAGATTGAACGGGTCTAGTTGTTCTTTGGACGAAAGAGTAGAAAATTGGATGCAGAAAATGGACAAATAAAGGTACTTCTTTGAATATTGGACAATTTGCTAAGGTATATTCGAAGATGACATTAGAGATTATATACTTCAAAAGGGAAAACACAAATTTGTTGTTGACGGTTGTGAACTTGTAATAAGGAAGAGAAGTAAAAATAAGATGATTTTGGATTAAACTATGTGATTGGACATGACCTTTTTGGTCGAAGAGGTCTAGCCTTTCTTTGGATTAAGAAGTAAACATTTGGTTGAAGATTTCAGAAAATGGACAAGTTAAGATATACATAGGATAAGAGAATTTCGGTTTAAAGTTTGAGATTGGACTTCAACTTTAAGATTTAACGGGTCTAGCTGTTCTTTGGACGAAAGACTAGAAAACTTGATTGAGAGTTAAGAAAATGGACAGATAAAGATACTTCTTAAAATTTTGGACGATGTATTAAGGGTGATATATATTGGAAGATAACATTAGTGATTATATAGAGAAAAAAGGAAACACAAATTTGTTGTTGATGATTGTGTATGCCTTAAAGAAGGAAGATAAGTGGGGATATGATGATTTGGATTAAGGTATATGATTGGACTTTAACTTTTTGATTGAAGAGGTCTAGCCTTTCTTTGGATTATGAAGTAAACATTTGGTTGAAGATTTCAGAAAATGGACAAGTTAAGAGACACATAATATAAGAGAAAATTTTGGTTTAAGGTTTGAGATTGAACACTTTAAGATTGAACGGGTCTAGCCGTTCTTTTAACGAAAGAGTAGGAAATTGGATGATGTGTTAAGAAAATTGACAAATAAAGATACTTCTTAGAATTTAGGACGACTTATTAACGTGATATATATTGGAAGATAAGATAAGAGTTTAGATACTGGAAAAGGGAAAACACAAATTTGTTGTTGACGGTTGTGTATGCTTGGAAGAAGGAAAATAAGTAAGAATAAGATGATTTTGGATTAAACTATGTGATTGGATTTTAACTTTTTGATTGAAGAGGTCTAGCCTTTCTTGATAAGATAAGAGAATATTGGTTTAATGTTGAGATTGGACGTAAGCTTTAATATTGATTGGGTCCCGCCATTCTTTGGACGAAAGAGTAGAAAATTTTACTGAGAGTTAAAAAAATGGACAAATAAAGATAATTCTTAGAATTTTGGATGATTTATTAATGTGATATATATTGGATGATAACATGTTGGAACTCAAAAGAGCACACTTCTTGAAGTTAATATATTAGGTATTAGTAGCATATGAGGATATCATCAAAGTAAAGAATTACCGAACAGTAAAACAAAGAATCTCAGGTTTGGTTTACAATTTATCTTTGTTTTAAAAAACTCGCACTAGCCTTCCTTTTGGTGAAGAATTAAGATAAACCCTTTTGTTGGTTATTATTTAGGTCCTTCAGTGGTGGACTCCCTGTTGTAAAACCACATGGATCTTGGAGTCTGTTGCTTCTAATAAGCTATTAAGCTATAAGTTAATGCATTGCTTTTAGGTGTAGATACGTAAGTTTAATTAGTAGACATTGCTTTTAGGTGTAGATACGTAAGTTTAATTAGTAGATAATTGCTTGAAGAATGCATTAGGAACTATTTAATATCAGGAGTTGTCAGCACTTATGCAACATCAAGACATTTCCTTTGTCCCTCGCCCCAAAAAAAGGGTCTCAAAGAGAGATGCAAATTAACTTTTGCACCTGATAGCTGATATGGATCACATTTTGCTGTATAACTTTGTCCCAATAAACAAAGAGGTCTCGAAGAGAAATGCATACCACATTTTGACCTTGGTAGCTGATATGGATCTCATTTTTCTGTTTCTAAGGGTTCCTTACCAACTTGATCAACTTGTAAGTAATCAACCAAGATTATCAGAATTTTTTTCTATGACAAAAGGTCTGACGCTGGAGAAACCCAAAATTTTCATGACTACTGAAAAGAAATATGGAACAGAGGATTCACTGTCCTTGGTGGCTATGAATTTAAAGGATAACACTTTGTCTGAAGTGAACGAATCGATAGAATATAGAGCAAAGATGCATTCTGACTCTGAAATGAATCTTCAAGATAATGCAGATGCTGAACTGAATGAGAAGTCAAGTGATGATTTAGAGGCTACCAATCTAAAGGATACAAATATATCCGATATAGATGTATCTACTGAATATAAACCACAAGTTTGTGAAAGTTTTGAGATGCTTCCTCGAAAGGATGCTGATGTAGGAGTACAAAAAGGGCCAAGCAAAGGAAAATGTAATTATGCAGATGAAGAACCAGGAATTGTTGATGTGGGCAGAGCAGTGAAGAAAATATATATCTAGTTTGCATGGTTTTTCTGAATCAACTCACAATGGTAGCACCAATAATTATCATAGGGATGAATCATCAAGTTCTAAGCTGTGGCATTCAACACTTGAGAATCCAGATTTTGTGGAAAACGATTTCAAGGTATTTTAGGTTATGCAAGAGTTTTTCTTACACACTGGGTTTTTTTATTGATGGCATTTGTCTTAACTACTTTAATTTCATCCACATTTTCTAAATCTTCAACATTTATAGAAGTTTTTTATCATTTCATTACAGTTTGATGGTAACTTTTAACTTTTTGTCATTTCATAGACTAAATTTGTTTTCTTCAATTCAATCTGCAGAAGTCAAGGCTGCATTTCATTGGAACTTGGAGAAATCGTTATTATAAGTGTCTTCCATGGTCAGCTAATGGGTCCAATCTTGTGACTTCTCACATCAATGGTTCTTCCCATCATTAGTCTGCTACTATTATCCATGTTGACATGGTAATCTTTGAGCAATATTGGTCCTTCAAATATCTGCATGTTGGCTTTTGTTGTCACTATTCTTTGGTTACTTTACAAGAATTACTTGGTTGAACTTGTCAGTTATTTTTTAATCATCATTATATATTCGTTAATTCATTTTGAAGTATAGTAATACCAGTATGTTGCTGCCTCAGGACTGCTTTTTTGTCTCAGTGGTTATTCGAAACATTCCGGAATTTAAGGATAGGCCTATAGCTGTATGCCACTCAGATAATCCTAAAGGAACTGCAGAAATTTCATCTGCAAACTACCCAGCTCGAGCTTATGGTTGGTCTTCTAGTTCTTTATTTATATAAGCGATAGTTCAAATCTAAGGTTTTTCTAGAGTATAATTGATTCTTCTCTATTTGCCCATATCTATCAAGGAGTCAGAGCAGGAATGTTTGTTAGAGATGCAAACGCTCTTTGTCCCCATCTTGTTATTTTTCCATATGACTTCAAGTCCTATGAGGAGGTAAGTGGTTGACTATCACCGGGTTGTCATTTGTCAATCAGTTTGCTTATGGAAGATGAAAAATCATATTCTACTTTTGGTATCTTCCATATACAAGGGTGTTTTGTTGGCATCTGACATCTTTGGAAATATGCAGGTAGCCGATCAGTTCTATGACATATTGCATAAGCATTGTGAGAAAGTGCAGGTCTGTTTCAGATAGCATTTCTTGTAGGCAATTCAATGTGATTTGCTTCATTAATCTTGCTACTTGTGTCAAACGCAGGTTGTAAGTTGTGATGAAGAATTTTTGGATATCTCGGGCACAAACGAGATAGATCTTGAGGTATTGGCTTAAAAAATCATAAAAGAAATTTTTGATACAATAGGATGTACTGCAAGTGCTGACATATAGCTACGAATATGCTAATGGCTCACCTTGCCACTAGAATTGCAAAACTTGATCGTGGTCAAAATTACTCTGAAGTACGTCTTTAATCACTCAAAATTAATTTAATATTAATTTTACACTTTTAAATGCAATTTTAAGTATTACATAATCATTCTCCAACATATCCTAAGTCTAAACTATTGATCTATATATTGACATAAGACTTTTTTTTTTAATTGATTGTTTGAGAGTTTTAGTTATATATTTAGGATCAATTACTTCATACTAAAATGAAATTGGTTATTTTTAAACTTAAAAGTATATAGTTGAGATTCAAGAAATTTAAATTTAGTTTAAATACCCTCCATCTTTATATATATACTTGTTTTGTCTTTTATCCCTCCAGAACAATTTCAAAGAGATATCATATATATATATACATATAGTAGTAATCCTTTGAGAGAAATTTCCATTTCTTTTCTTCTCTTTTTGCAAGAACAAAATTCACAAATCAATTTATTTTTAAGAATTCGATTAGAGAACTTTTAGAAATAGATTTTTTTTTAGTAAAAAAAGATAGATATTCAAAAACCAACTAATTTTTTTTCTTTGAAAAAACTCAATAAAATTATAATAGTCATGAAACGAGATCGACACGATTAAAGAGATTATAATAAATACATTATGAATAAGAATTATTTCAATGTCATATAATATTATAGCCAATATAGGCTAATATATTTGTCCTTAAAGAACCAAACCAAAGGCTATATATGTAGAGTTTATGCATGGTCAATTAAAATTTAGAAGCAATATTATAATATCTACGAATGAAGGAATTGAGGAAGTCAGTGTTACATTCCTTCAGAGTAGGTAGGTTCTAGAAATTTTTGCACTAAACCTTTATTTGGTCAAATCACTAAAGAACAATAAATTTATTAGAAAATGAAAGAAAATTTTGGTTCATTAGTCTCATAAACGTGCTTGGTGCATTACATTCAAATGTTCTTGGAGAGTTCTTCGAGAATTTGGAATTTTATTATCTTGCCTCTAAAATGAGGAGGGCAGCCGTATATATAGACTGTCACAACAAAACACAAAAGTTGAATACCTAACACCCAACAACTAACTAAAATACAAAGGAAATATCCAAAGTTGAGACAACGGGAACTAAAACAAACTAACAGCTAATAGACTCAAGTCCAACTGAAAATAAGCCTGAAAGGCCCGTACATCATGGTACTAGAGAAACATTTTATTGTATTTGGTCTAGAAAGCTTGATGATGGCCAATTTTTTTTGGATTTGTGGAGTTTGAATTGTTATGTATGTGAGGAGAAACAAAGATAGGATAAAAAAAATTTTGGATTATAGTATGAGATTGGGCTACTTTTTGTTTGAAGGCTTTGTAGTGGGTAAAGAGCATGTTCATGTTTCCATCCTTCAATTTTCCGATCACACTCTCACTTTTTGCAAATATGATGATAGGATGTTGGATAAATTATGTCGAGTTGTCCGCTGAGTTGTGGACTTATCTTGGCTTGCTATTAGGAGGGTATCCCAAAAGAGCTCCGTTTTGGCAACCAATGATTGATAAAATCTATACAAAGCTTGATAAATGGAGGACGTTTAATCTCTCAAGGGGAGGGCGTGCTACTCTTTGTAAGTCAGTTCTATCCAATCTTCCCACCTATATATGTCTTTGTTCCTAATGCCAGAAAAAATTATTTCTATTTTGGAAAGAATGATGAGGAACTTTTTTTGGGAAGGGCAGGGCATAAGGGAAGGAAGATAAATCATTTGGTGAAATGGAATTTGGTAACAAAAAGTCAGATTGATGGAGGCCTTGGTATTGGGGGTCTTAAAGCAAAAAATCTGGCACTCAACTAAATGGGGTTGGAGATATTTCAATGAAAAAAAAATCCTTATGATGTCAGGTGGTTAGAAGCATAAATGGCAAAAATACCTTTAACTGGCACACGGCTGGAAAGAATGGCTTTAGTTCGTGAAGCCCTTGGATTAGTATTTCAAGAACATAGTTGAAGGTGGAAGCATTGGCCTCTTTTCAGCTTGGTAATGATACTAGAATTGCTTTTTGGTTGGATCCTTGAGATGGTTTGGTACCGTTGAGTATTGGCTACCAAAAACTCTTTAGGGTTGCACTTTTCCCTAAGGGATCGGTGTCGAATCATTGGGATGGGATTTCATGCTCATGGTCTATTGTTTTTCGATAGCTGCTTAAAGATGATGAAATATTTGAATTTCAAAATTTACTTAGTCAAATTTCAGCTAGAAGGGTGAATGAGGGATTTGATTGAAGAAAGTGGTCGTTAGAAGCTTCTGTGTTTTTTTTTTCATTTAAATCCCTCTTTATACACTTATCCCCCTCATCTCCACTTGATAAGATGTTTTTTAAAGCCCTTTGAAAAACGAAATGCCCAAGGCGCGTCAACATTCTTATATTGATTATGGCTTTTGGTCAATTAAATTGTTCTTCTGTCTTACAAAGAAAGTTAACCACTCCCTCCCATTGTCCCTTGTGTGAAGCGGCATGTTGTTCGGTGTTGGCGGCAGTTACTATCCTTTTTTAAAATTGCTTGGGTGTTTGATAAGGATTTTCGGGATAATATCCGCCAACTATTAATTGGTCCAAATTTGAAAGTAGGTCCTTGGTTGATTTGGACCAATGTGGTAAAGGCTTTTCTTGCGAAATTGCGGTTTGAAAGAAATCAAAGGGTTTTTCAGAATAAGCATTGGAAGTGGTTGGATCGTTTTGAAGCTACCAGGCTAAATGTTTATTCATGGTGTATGATCATTTTCATGCATTTTCCCGTAATCCGAAAAGGGTAAGCAGTTTTAATTTTTGTGTATTCGTGTTTTTGGGTCTTCTAGTTTTCCCTGAGTTAGACCTCAACTGTTGTTCAACTGATCACATCTTTGCATTGGTTGGAATTGGATTCCATATTTGCCTAAAAGAAATAATTGTGGGATAGAATTTTAACAATGGAAGCAATAGAATATTAGATAATAGGGTTATATTTGAATTTAGATTGTTTATTTTGGACCTGTTGAATTTTTTATGGTTATGTATCTTAAGAGGGAGAAAGACACTCTTAGGATGATAGAATTTTTGGGTAAAGAATGAGATTCAATTGGATCTCACCTTTTAGTCTGAAGAGTTATGGTTGTGAGAAGTGGGCTCAAATTTTTGCTATTTGGTGGACTCAATATAATCATGGTTCTTCCAAAAGAGATTAGGATGAGATTGAGAAGAATGAAAGGGTCCTTTGGGAAACCAATTGAAAGGTACCGTCATGTCATTCCAGAAAGCTCTAATAAATGGGTAGAGTATTAAAGATACATCTACTTGGAGAGAGAGCCATGAAATCTTGATAGGAATGATATTAGGGCGTTGGAGGGATGTTAAGGGTATATTAGTAATTAGTTAGAGGAGTTGGTTATGAAATTTGATTATAAATAGAGAAGAGAACTGAAAAAAAAAGAAAATCTAGCTCTTCTTGGTTTTTAGAAGGCTTTGCGGATTGTTTTTAAGTCGTTTTGAAGATCTTTTTTAGTGCCTTTTTGTCATTCGAAGCTAATCGGTTAAAGCACCTTTTGAAGTCGGTAGGGCTCTTATTTTGTTGGTTTGGAAGATCCTTGTTCTCTAGTTTCCCTTGTTTTCTCCATTTCTTAAGCTCAGAGTTCGGACTCTTGG

mRNA sequence

ATGGGCAAGGTCCTTCAGTGGTGGACTCCCTGTTGTAAAACCACATGGATCTTGGAGTCTGTTGCTTCTAATAAGCTATTAAGCTATAAGGTTCCTTACCAACTTGATCAACTTGTAAGTAATCAACCAAGATTATCAGAATTTTTTTCTATGACAAAAGGTCTGACGCTGGAGAAACCCAAAATTTTCATGACTACTGAAAAGAAATATGGAACAGAGGATTCACTGTCCTTGGTGGCTATGAATTTAAAGGATAACACTTTGTCTGAAGTGAACGAATCGATAGAATATAGAGCAAAGATGCATTCTGACTCTGAAATGAATCTTCAAGATAATGCAGATGCTGAACTGAATGAGAAGTCAAGTGATGATTTAGAGGCTACCAATCTAAAGGATACAAATATATCCGATATAGATGTATCTACTGAATATAAACCACAAGTTTGTGAAAGTTTTGAGATGCTTCCTCGAAAGGATGCTGATGTAGGAGTACAAAAAGGGCCAAGCAAAGGAAAATGTAATTATGCAGATGAAGAACCAGGAATTGTTGATGTGGGCAGAGCACTGTGGCATTCAACACTTGAGAATCCAGATTTTGTGGAAAACGATTTCAAGAAGTCAAGGCTGCATTTCATTGGAACTTGGAGAAATCGTTATTATAAGTGTCTTCCATGGTCAGCTAATGGGTCCAATCTTTATAGTAATACCAGTATGTTGCTGCCTCAGGACTGCTTTTTTGTCTCAGTGGTTATTCGAAACATTCCGGAATTTAAGGATAGGCCTATAGCTGTATGCCACTCAGATAATCCTAAAGGAACTGCAGAAATTTCATCTGCAAACTACCCAGCTCGAGCTTATGGAGTCAGAGCAGGAATGTTTGTTAGAGATGCAAACGCTCTTTGTCCCCATCTTGTTATTTTTCCATATGACTTCAAGTCCTATGAGGAGGTAGCCGATCAGTTCTATGACATATTGCATAAGCATTGTGAGAAAGTGCAGGTTGTAAGTTGTGATGAAGAATTTTTGGATATCTCGGGCACAAACGAGATAGATCTTGAGGATGTTGGATAAATTATGTCGAGTTGTCCGCTGAGTTGTGGACTTATCTTGGCTTGCTATTAGGAGGGTATCCCAAAAGAGCTCCGTTTTGGCAACCAATGATTGATAAAATCTATACAAAGCTTGATAAATGGAGGACGTTTAATCTCTCAAGGGGAGGGCGTGCTACTCTTTGGCATAAGGGAAGGAAGATAAATCATTTGGTGAAATGGAATTTGGTAACAAAAAGTCAGATTGATGGAGGCCTTGGTATTGGGGGTCTTAAAGCAAAAAATCTGGCACTCAACTAAATGGGGTTGGAGATATTTCAATGAAAAAAAAATCCTTATGATGTCAGGTGGTTAGAAGCATAAATGGCAAAAATACCTTTAACTGGCACACGGCTGGAAAGAATGGCTTTAGTTCGTGAAGCCCTTGGATTAGTATTTCAAGAACATAGTTGAAGGTGGAAGCATTGGCCTCTTTTCAGCTTGGTAATGATACTAGAATTGCTTTTTGGTTGGATCCTTGAGATGGTTTGGTACCGTTGAGTATTGGCTACCAAAAACTCTTTAGGGTTGCACTTTTCCCTAAGGGATCGGTGTCGAATCATTGGGATGGGATTTCATGCTCATGGTCTATTGTTTTTCGATAGCTGCTTAAAGATGATGAAATATTTGAATTTCAAAATTTACTTAGTCAAATTTCAGCTAGAAGGGTGAATGAGGGATTTGATTGAAGAAAGTGGTCGTTAGAAGCTTCTGTGTTTTTTTTTTCATTTAAATCCCTCTTTATACACTTATCCCCCTCATCTCCACTTGATAAGATGTTTTTTAAAGCCCTTTGAAAAACGAAATGCCCAAGGCGCGTCAACATTCTTATATTGATTATGGCTTTTGGTCAATTAAATTGTTCTTCTGTCTTACAAAGAAAGTTAACCACTCCCTCCCATTGTCCCTTGTGTGAAGCGGCATGTTGTTCGGTGTTGGCGGCAGTTACTATCCTTTTTTAAAATTGCTTGGGTGTTTGATAAGGATTTTCGGGATAATATCCGCCAACTATTAATTGGTCCAAATTTGAAAGTAGGTCCTTGGTTGATTTGGACCAATGTGGTAAAGGCTTTTCTTGCGAAATTGCGGTTTGAAAGAAATCAAAGGGTTTTTCAGAATAAGCATTGGAAGTGGTTGGATCGTTTTGAAGCTACCAGGCTAAATGTTTATTCATGGTGTATGATCATTTTCATGCATTTTCCCGTAATCCGAAAAGGGTAAGCAGTTTTAATTTTTGTGTATTCGTGTTTTTGGGTCTTCTAGTTTTCCCTGAGTTAGACCTCAACTGTTGTTCAACTGATCACATCTTTGCATTGGTTGGAATTGGATTCCATATTTGCCTAAAAGAAATAATTGTGGGATAGAATTTTAACAATGGAAGCAATAGAATATTAGATAATAGGGTTATATTTGAATTTAGATTGTTTATTTTGGACCTGTTGAATTTTTTATGGTTATGTATCTTAAGAGGGAGAAAGACACTCTTAGGATGATAGAATTTTTGGGTAAAGAATGAGATTCAATTGGATCTCACCTTTTAGTCTGAAGAGTTATGGTTGTGAGAAGTGGGCTCAAATTTTTGCTATTTGGTGGACTCAATATAATCATGGTTCTTCCAAAAGAGATTAGGATGAGATTGAGAAGAATGAAAGGGTCCTTTGGGAAACCAATTGAAAGGTACCGTCATGTCATTCCAGAAAGCTCTAATAAATGGGTAGAGTATTAAAGATACATCTACTTGGAGAGAGAGCCATGAAATCTTGATAGGAATGATATTAGGGCGTTGGAGGGATGTTAAGGGTATATTAGTAATTAGTTAGAGGAGTTGGTTATGAAATTTGATTATAAATAGAGAAGAGAACTGAAAAAAAAAGAAAATCTAGCTCTTCTTGGTTTTTAGAAGGCTTTGCGGATTGTTTTTAAGTCGTTTTGAAGATCTTTTTTAGTGCCTTTTTGTCATTCGAAGCTAATCGGTTAAAGCACCTTTTGAAGTCGGTAGGGCTCTTATTTTGTTGGTTTGGAAGATCCTTGTTCTCTAGTTTCCCTTGTTTTCTCCATTTCTTAAGCTCAGAGTTCGGACTCTTGG

Coding sequence (CDS)

ATGGGCAAGGTCCTTCAGTGGTGGACTCCCTGTTGTAAAACCACATGGATCTTGGAGTCTGTTGCTTCTAATAAGCTATTAAGCTATAAGGTTCCTTACCAACTTGATCAACTTGTAAGTAATCAACCAAGATTATCAGAATTTTTTTCTATGACAAAAGGTCTGACGCTGGAGAAACCCAAAATTTTCATGACTACTGAAAAGAAATATGGAACAGAGGATTCACTGTCCTTGGTGGCTATGAATTTAAAGGATAACACTTTGTCTGAAGTGAACGAATCGATAGAATATAGAGCAAAGATGCATTCTGACTCTGAAATGAATCTTCAAGATAATGCAGATGCTGAACTGAATGAGAAGTCAAGTGATGATTTAGAGGCTACCAATCTAAAGGATACAAATATATCCGATATAGATGTATCTACTGAATATAAACCACAAGTTTGTGAAAGTTTTGAGATGCTTCCTCGAAAGGATGCTGATGTAGGAGTACAAAAAGGGCCAAGCAAAGGAAAATGTAATTATGCAGATGAAGAACCAGGAATTGTTGATGTGGGCAGAGCACTGTGGCATTCAACACTTGAGAATCCAGATTTTGTGGAAAACGATTTCAAGAAGTCAAGGCTGCATTTCATTGGAACTTGGAGAAATCGTTATTATAAGTGTCTTCCATGGTCAGCTAATGGGTCCAATCTTTATAGTAATACCAGTATGTTGCTGCCTCAGGACTGCTTTTTTGTCTCAGTGGTTATTCGAAACATTCCGGAATTTAAGGATAGGCCTATAGCTGTATGCCACTCAGATAATCCTAAAGGAACTGCAGAAATTTCATCTGCAAACTACCCAGCTCGAGCTTATGGAGTCAGAGCAGGAATGTTTGTTAGAGATGCAAACGCTCTTTGTCCCCATCTTGTTATTTTTCCATATGACTTCAAGTCCTATGAGGAGGTAGCCGATCAGTTCTATGACATATTGCATAAGCATTGTGAGAAAGTGCAGGTTGTAAGTTGTGATGAAGAATTTTTGGATATCTCGGGCACAAACGAGATAGATCTTGAGGATGTTGGATAA

Protein sequence

MGKVLQWWTPCCKTTWILESVASNKLLSYKVPYQLDQLVSNQPRLSEFFSMTKGLTLEKPKIFMTTEKKYGTEDSLSLVAMNLKDNTLSEVNESIEYRAKMHSDSEMNLQDNADAELNEKSSDDLEATNLKDTNISDIDVSTEYKPQVCESFEMLPRKDADVGVQKGPSKGKCNYADEEPGIVDVGRALWHSTLENPDFVENDFKKSRLHFIGTWRNRYYKCLPWSANGSNLYSNTSMLLPQDCFFVSVVIRNIPEFKDRPIAVCHSDNPKGTAEISSANYPARAYGVRAGMFVRDANALCPHLVIFPYDFKSYEEVADQFYDILHKHCEKVQVVSCDEEFLDISGTNEIDLEDVG

Homology

[Close]

BLAST of Lsi01G002930 vs. Swiss-Prot
Match: REV1_ARATH (DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 PE=2 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 9.0e-70
Identity = 154/356 (43.26%), Postives = 212/356 (59.55%), Query Frame = 1


Query: 10  PCCKTTWILESVASNKLLSYKVPYQLDQLVSNQPRLSEFFSMTKGLTLEKPKIFMTTEKK 69
           P  K TWI++S+++N+LL + VPYQLDQL   QP+LS FF+    LT +      + +  
Sbjct: 150 PVVKPTWIVDSISANRLLGW-VPYQLDQLNDTQPKLSAFFAPRSHLTPQMASPVTSFQPD 209

Query: 70  YGTEDSLSLVAMNLKDNTLSEVNESIEYRAKMHSDSEMNLQDNADAELNEKS-SDDLEAT 129
            G  ++        ++ +    ++S E R  +  + +    +N   EL E++ + DL+++
Sbjct: 210 TGYSEA--------EEGSSIRADDSEEARDHIDDEIDGVYIENTTPELTEQTGTGDLKSS 269

Query: 130 NLKDTNISDIDVSTEYKPQVCESFEMLPRKDADVGVQKGPSKGKCNYADEEPGIVDVGRA 189
            +    + + D+  +      +S   L     +  V      G  + A            
Sbjct: 270 EMNAEGLGNYDIEEKEVSSELQSTTNLHSTSDNKSVHANGKNGGKSIATAAGS-----ST 329

Query: 190 LWHSTLENPDFVENDFKKSRLHFIGTWRNRYYKC-------LPWSANGSNLYS----NTS 249
             HSTLE+P+FVEN FK SRLHFIGTWRNRY K        L W+ +G N       +T 
Sbjct: 330 RRHSTLEDPNFVENYFKNSRLHFIGTWRNRYRKRFHGSSNGLKWADSGQNTAEMAKKSTI 389

Query: 250 MLLPQDCFFVSVVIRNIPEFKDRPIAVCHSDNPKGTAEISSANYPARAYGVRAGMFVRDA 309
           + +  DCFFVSVVI+N  E  D+P+AVCHSDNPKGTAEISSANYPARAYGV+AGMFVR A
Sbjct: 390 IHIDLDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAEISSANYPARAYGVKAGMFVRHA 449

Query: 310 NALCPHLVIFPYDFKSYEEVADQFYDILHKHCEKVQVVSCDEEFLDISGTNEIDLE 354
             LCP LVI PY+F++YEEVADQFYDILH+HC KVQ +SCDE FLD+S  ++++ E
Sbjct: 450 KDLCPQLVIVPYNFEAYEEVADQFYDILHRHCRKVQALSCDEAFLDVSDLSDVETE 491

[Close]

BLAST of Lsi01G002930 vs. Swiss-Prot
Match: REV1_SCHPO (DNA repair protein rev1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rev1 PE=3 SV=3)

HSP 1 Score: 104.8 bits (260), Expect = 2.0e-21
Identity = 61/168 (36.31%), Postives = 91/168 (54.17%), Query Frame = 1


Query: 191 HSTLENPDFVENDFKKSRLHFIGTWRNRYYKCLPWSANGS----------NLYSNTSMLL 250
           +ST +N DF+EN F  SRLH + TW+  +   +      S          +  S   + +
Sbjct: 223 NSTTQNQDFLENFFSSSRLHHLSTWKADFKNEIQAMTTASEPVRPIMKDKSKKSRFLLHV 282

Query: 251 PQDCFFVSVVIRNIPEFKDRPIAVCHSDNPKGTAEISSANYPARAYGVRAGMFVRDANAL 310
             DCFF SV  R   E + +P+AV H       +EI+S NY AR +G++ GM+V  A  L
Sbjct: 283 DFDCFFASVSTRFSHELRLKPVAVAHGIK---NSEIASCNYEARKFGIKNGMYVGTAKNL 342

Query: 311 CPHLVIFPYDFKSYEEVADQFYDIL-HKHCEKVQVVSCDEEFLDISGT 348
           CP L +  YDF +YE V+ +FY IL +   + ++V+S DE  LDI+ +
Sbjct: 343 CPSLRVVDYDFGAYESVSREFYTILVNTLHDYIKVISIDEALLDITSS 387

[Close]

BLAST of Lsi01G002930 vs. Swiss-Prot
Match: DPO4_ECOLC (DNA polymerase IV OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=dinB PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.2e-15
Identity = 41/103 (39.81%), Postives = 65/103 (63.11%), Query Frame = 1


Query: 243 DCFFVSVVIRNIPEFKDRPIAVCHSDNPKGTAEISSANYPARAYGVRAGMFVRDANALCP 302
           DCFF +V +R+ P  +D PIA+  S   +G   IS+ANYPAR +GVR+ M    A  LCP
Sbjct: 10  DCFFAAVEMRDNPALRDIPIAIGGSRERRGV--ISTANYPARKFGVRSAMPTGMALKLCP 69

Query: 303 HLVIFPYDFKSYEEVADQFYDILHKHCEKVQVVSCDEEFLDIS 346
           HL + P  F +Y+E ++   +I  ++  +++ +S DE +LD++
Sbjct: 70  HLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVT 110

[Close]

BLAST of Lsi01G002930 vs. Swiss-Prot
Match: DPO4_ECOL6 (DNA polymerase IV OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=dinB PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.2e-15
Identity = 41/103 (39.81%), Postives = 65/103 (63.11%), Query Frame = 1


Query: 243 DCFFVSVVIRNIPEFKDRPIAVCHSDNPKGTAEISSANYPARAYGVRAGMFVRDANALCP 302
           DCFF +V +R+ P  +D PIA+  S   +G   IS+ANYPAR +GVR+ M    A  LCP
Sbjct: 10  DCFFAAVEMRDNPALRDIPIAIGGSRERRGV--ISTANYPARKFGVRSAMPTGMALKLCP 69

Query: 303 HLVIFPYDFKSYEEVADQFYDILHKHCEKVQVVSCDEEFLDIS 346
           HL + P  F +Y+E ++   +I  ++  +++ +S DE +LD++
Sbjct: 70  HLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVT 110

[Close]

BLAST of Lsi01G002930 vs. Swiss-Prot
Match: DPO4_ECOL5 (DNA polymerase IV OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=dinB PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.2e-15
Identity = 41/103 (39.81%), Postives = 65/103 (63.11%), Query Frame = 1


Query: 243 DCFFVSVVIRNIPEFKDRPIAVCHSDNPKGTAEISSANYPARAYGVRAGMFVRDANALCP 302
           DCFF +V +R+ P  +D PIA+  S   +G   IS+ANYPAR +GVR+ M    A  LCP
Sbjct: 10  DCFFAAVEMRDNPALRDIPIAIGGSRERRGV--ISTANYPARKFGVRSAMPTGMALKLCP 69

Query: 303 HLVIFPYDFKSYEEVADQFYDILHKHCEKVQVVSCDEEFLDIS 346
           HL + P  F +Y+E ++   +I  ++  +++ +S DE +LD++
Sbjct: 70  HLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVT 110

[Close]

BLAST of Lsi01G002930 vs. TrEMBL
Match: A0A0A0K6E9_CUCSA (DNA repair protein REV1 OS=Cucumis sativus GN=Csa_7G071660 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.0e-80
Identity = 188/401 (46.88%), Postives = 223/401 (55.61%), Query Frame = 1


Query: 10  PCCKTTWILESVASNKLLSY------------------------------KVPYQLDQLV 69
           P  K TWIL+SVASNKLLS+                              K+    ++  
Sbjct: 160 PVVKPTWILDSVASNKLLSWVPYQLDQLVNNQPRLSEFFSMKKGPTVEKPKICLTSEKKY 219

Query: 70  SNQPRLSEFFSMTKGLTLEKPK----------------IFMTTEKKYGTEDSLSLVAMNL 129
             +  LS      K  TL +                  +    + K     S  L A  L
Sbjct: 220 ETEDSLSPVAMNLKDTTLSEVNESVGYRAELHSDSEMNLQYNADAKLNETSSDDLEAAKL 279

Query: 130 KDNTLSEVNESIEYRAKMHSDSEMNLQDNADAELNEKSSDDLEATNLKDTNISDIDVSTE 189
           KD ++S+V+ SIEY+ +     EM  Q +AD E+ +  S +      ++  I D+  S+E
Sbjct: 280 KDTSISDVDVSIEYKPQFCGSFEMLPQKDADVEVQKGPSSEKYNYAGEEPGIDDVGQSSE 339

Query: 190 YKPQVCESFEMLPRKDADVGVQKGPSKGKCNYADEEPGIVDVGRALWHSTLENPDFVEND 249
              +   SF          G+      G  N       +      L HSTLENPDFVEN 
Sbjct: 340 ---ENISSFH---------GLSASTHNGSTNSDGSSSSMAAGSSKLQHSTLENPDFVENY 399

Query: 250 FKKSRLHFIGTWRNRYYKCLPWSANGSNLYSN-----------TSMLLPQDCFFVSVVIR 309
           FKKSRLHFIGTWRNRYYK  P  ANGSN  ++           T + +  DCFFVSVVIR
Sbjct: 400 FKKSRLHFIGTWRNRYYKRFPRLANGSNSVTSPINGSSHDQSATIIHVDMDCFFVSVVIR 459

Query: 310 NIPEFKDRPIAVCHSDNPKGTAEISSANYPARAYGVRAGMFVRDANALCPHLVIFPYDFK 354
           NIP+FKDRP+AVCHSDNPKGTAEISSANYPAR+YGV+AGMFVRDA ALCPHLVIFPYDFK
Sbjct: 460 NIPKFKDRPVAVCHSDNPKGTAEISSANYPARSYGVKAGMFVRDAKALCPHLVIFPYDFK 519

[Close]

BLAST of Lsi01G002930 vs. TrEMBL
Match: M5VPF9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019938mg PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 6.5e-75
Identity = 177/363 (48.76%), Postives = 221/363 (60.88%), Query Frame = 1


Query: 10  PCCKTTWILESVASNKLLSYKVPYQLDQLVSNQPRLSEFFSMTKGLTLEKPKIF------ 69
           P  K +W+L+S+++NKLLS+ VPYQLDQL  NQPRLS FF+         PKI       
Sbjct: 164 PVVKPSWVLDSISANKLLSW-VPYQLDQLACNQPRLSAFFA---------PKIIPDSGDA 223

Query: 70  ---MTTEKKYGTEDSLSLVAMNLKDNTLSEVNESIEYRAKMHSDSEMNLQDNADAELN-E 129
                 + KY  ED+ SLV   L+D   SEV  S E+R ++  +S     DN   E N E
Sbjct: 224 LRDAANQVKYENEDT-SLVEARLEDADESEVCRSTEHRWQISGES-----DNVMFEKNNE 283

Query: 130 KSSDDLEATNLKDTNISDIDVSTEYKPQVCESFEMLPRKDADVGVQKGPSKGKCNYADEE 189
           +S  +L  +++KD  +  ++++T          + L        V    S   C      
Sbjct: 284 ESGQELHISSVKDCEMRIVEMTTSAAEDDGSVKDELQYSTHQTSV----SASSCRL---- 343

Query: 190 PGIVDVGRALWHSTLENPDFVENDFKKSRLHFIGTWRNRYYKCLPWSANG-----SNLYS 249
           P   + G    H+TL +P+FVEN FK SRLHFIGTWRNRY K  P S+ G      NL +
Sbjct: 344 PTSSNAGSNQSHATLGDPNFVENYFKSSRLHFIGTWRNRYRKRFPRSSKGFKRTEPNLSA 403

Query: 250 NTS----MLLPQDCFFVSVVIRNIPEFKDRPIAVCHSDNPKGTAEISSANYPARAYGVRA 309
           + S    + +  DCFFVSVVIR   E KDRP+AVCHSD+PKGTAEISSANYPAR YGV+A
Sbjct: 404 SASPTAIIHIDMDCFFVSVVIRKRSELKDRPVAVCHSDSPKGTAEISSANYPARDYGVKA 463

Query: 310 GMFVRDANALCPHLVIFPYDFKSYEEVADQFYDILHKHCEKVQVVSCDEEFLDISGTNEI 354
           GMFVR+A ALCPHLVI PYDF++YEEVADQFYDILHKH  KVQ VSCDE FLD++    +
Sbjct: 464 GMFVRNAKALCPHLVIIPYDFEAYEEVADQFYDILHKHSNKVQAVSCDEAFLDVTDAEGL 502

[Close]

BLAST of Lsi01G002930 vs. TrEMBL
Match: B9RY76_RICCO (DNA repair protein REV1 OS=Ricinus communis GN=RCOM_0810900 PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 2.7e-73
Identity = 165/353 (46.74%), Postives = 212/353 (60.06%), Query Frame = 1


Query: 10  PCCKTTWILESVASNKLLSYKVPYQLDQLVSNQPRLSEFFSMTK------GLTLEKPKIF 69
           P  +  WIL+SVA+NKLLS+ VPYQL+QL +NQP+LS FF M         L +E  ++ 
Sbjct: 156 PVVRPAWILDSVAANKLLSW-VPYQLEQLANNQPKLSAFFCMKNKAASEDDLNIEAFQVM 215

Query: 70  MTTEKKYGTEDSLSLVAMNLKDNTLSEVNESIEYRAKMHSDSEMNLQDNADAELNEKSSD 129
           +    K GT           +D  L EVN+ ++Y   +         D  D E+ E SS 
Sbjct: 216 LDPSLKGGTS----------QDTNLPEVNDPVKYGKPIDGQF-----DYPDCEIEETSSR 275

Query: 130 DLEATNLKDTNISDIDVSTEYKPQVCESFEMLPRKDADVGVQKGPSKGKCNYADEEPGIV 189
             +++ L+    S+    TE +  V    +  PR   D  ++  P+      ++      
Sbjct: 276 SSKSSELRIEEPSN----TEGENNVYHELQSSPR---DHSIESTPTPAIARPSNPR---- 335

Query: 190 DVGRALWHSTLENPDFVENDFKKSRLHFIGTWRNRYYKCLPWSAN-----------GSNL 249
                  HSTLE+P+FVEN FK SRLHFIGTWRNRY K  P  ++             N 
Sbjct: 336 -------HSTLEDPNFVENYFKSSRLHFIGTWRNRYRKRFPRLSSDFRCRSLTIDASDNS 395

Query: 250 YSNTSMLLPQDCFFVSVVIRNIPEFKDRPIAVCHSDNPKGTAEISSANYPARAYGVRAGM 309
           +    M +  DCFFVSVVIRN PE  D+P+AVCHSDNPKGTAEISSANYPARAYG++AG+
Sbjct: 396 HKTVIMHVDMDCFFVSVVIRNHPELHDKPVAVCHSDNPKGTAEISSANYPARAYGIKAGI 455

Query: 310 FVRDANALCPHLVIFPYDFKSYEEVADQFYDILHKHCEKVQVVSCDEEFLDIS 346
           FVRDA ALCP L+IFPY+F++YEEVADQFY++LHKHC KVQ VSCDE FLDI+
Sbjct: 456 FVRDAKALCPQLIIFPYNFQAYEEVADQFYNVLHKHCNKVQAVSCDEAFLDIT 474

[Close]

BLAST of Lsi01G002930 vs. TrEMBL
Match: A0A061E160_THECC (DNA-directed DNA polymerases, putative OS=Theobroma cacao GN=TCM_007158 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 3.0e-72
Identity = 175/363 (48.21%), Postives = 218/363 (60.06%), Query Frame = 1


Query: 10  PCCKTTWILESVASNKLLSYKVPYQLDQLVSNQPRLSEFFSMTKGLTLEKPKIFMTTEKK 69
           P  K TW+L+SVA N+LLS+ VPYQLDQL SNQP LS FF+       E        E K
Sbjct: 163 PVVKPTWVLDSVAVNRLLSW-VPYQLDQLASNQPTLSTFFTSKISPASEGVFTDAICEVK 222

Query: 70  YGTEDSLSLVAMNLKDNTLSEVNESIEYRAKMHSDSEMNLQDNADAE-LNEKSSDDLEAT 129
           +GTED     A   KD   SE  E  E+R K+  + +  +  N +++ + E SS   EA+
Sbjct: 223 HGTEDLCLKDAS--KDAKFSEAGEPSEWRKKITEEHDELMHGNTNSKVIEEPSSSYSEAS 282

Query: 130 N----LKDTNISDIDVSTEY-KPQVCES----------FEMLPRKDADVGVQKGPSKGKC 189
                ++ +N+   D S E  +PQ C            F+    K++      GP K +C
Sbjct: 283 QEVKVVERSNLVQDDESRENNRPQYCPEQPSASVSSHCFDNHSVKESPHSTALGPLK-QC 342

Query: 190 NYADEEPGIVDVGRALWHSTLENPDFVENDFKKSRLHFIGTWRNRYYKCLPWSANG---S 249
                            HSTL +P+FVEN FK SRLHFIGTWRNRY K  P   NG    
Sbjct: 343 -----------------HSTLGDPNFVENYFKNSRLHFIGTWRNRYRKRFPSLPNGFKCM 402

Query: 250 NLYSNTS--------MLLPQDCFFVSVVIRNIPEFKDRPIAVCHSDNPKGTAEISSANYP 309
           N +S+ S        + +  DCFFVSVVIR+ PE  D+P+AVCHSDNPKGTAEISSANYP
Sbjct: 403 NSHSDVSADTQKTAIIHIDMDCFFVSVVIRSHPELHDKPVAVCHSDNPKGTAEISSANYP 462

Query: 310 ARAYGVRAGMFVRDANALCPHLVIFPYDFKSYEEVADQFYDILHKHCEKVQVVSCDEEFL 346
           AR YG+RAGMFVRDA ALC HLVI PY+F++YEEVADQFY+ILHK+C +VQ VSCDE FL
Sbjct: 463 ARDYGIRAGMFVRDAKALCTHLVILPYNFEAYEEVADQFYNILHKYCNRVQAVSCDEAFL 504

[Close]

BLAST of Lsi01G002930 vs. TrEMBL
Match: F6H6A4_VITVI (DNA repair protein REV1 OS=Vitis vinifera GN=VIT_03s0091g00200 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 4.4e-71
Identity = 171/361 (47.37%), Postives = 226/361 (62.60%), Query Frame = 1


Query: 10  PCCKTTWILESVASNKLLSYKVPYQLDQLVS---NQPRLSEFFSMTKGLTLEKPKIFMTT 69
           P  K TW+L+SVA+NKLLS+ +PYQLDQL +   NQP+LS FF++      E      T 
Sbjct: 162 PVVKPTWVLDSVAANKLLSW-IPYQLDQLANETRNQPKLSAFFALKSIPVFEDAVTHTTY 221

Query: 70  EKKYGTEDSLSLVAMNLKDNTLSEVNESIEYRAKMHSDSEMNLQDNADAELNEKS-SDDL 129
                TEDS+     + KD   SE  + +EY  +   + + +  +N +  + EK  S+D 
Sbjct: 222 PLVPETEDSVFKGGTS-KDAVSSEGGQYLEYTRQSSGEIDDHQCENTNETIIEKPFSNDE 281

Query: 130 EATNLK--DTNISDIDVSTEYKPQVCESFEMLPRKDADVGVQKGPSKGKCNYADEEPGIV 189
           +++ +K  + + S+ +     K ++  S     R  A V      +  K + +    G  
Sbjct: 282 KSSEIKMEEQSFSNQEEECSIKNELQSSPH---RPSASVSSYYLDNARKESSSTTVVGCS 341

Query: 190 DVGRALWHSTLENPDFVENDFKKSRLHFIGTWRNRYYKCLPWSAN-----GSNLYS---- 249
           + G    HSTLE+P+FVEN FK SRLHFIGTWRNRY K  P  +N      S+L +    
Sbjct: 342 NKG----HSTLEDPNFVENYFKYSRLHFIGTWRNRYQKRFPRLSNEFKHTSSDLNASGVS 401

Query: 250 --NTSMLLPQDCFFVSVVIRNIPEFKDRPIAVCHSDNPKGTAEISSANYPARAYGVRAGM 309
             N  + +  DCFFVSVVIRN PE +D+P+AVCHS+NPKGTAEISSANYPAR YGV+AG+
Sbjct: 402 QKNVIIHMDMDCFFVSVVIRNNPELQDKPVAVCHSNNPKGTAEISSANYPARDYGVKAGI 461

Query: 310 FVRDANALCPHLVIFPYDFKSYEEVADQFYDILHKHCEKVQVVSCDEEFLDISGTNEIDL 354
           FVRDA ALCPHLVIFPY+F++YEEVADQFY+ILHKHC KVQ VSCDE FL++  + E D 
Sbjct: 462 FVRDAKALCPHLVIFPYNFEAYEEVADQFYNILHKHCNKVQAVSCDEAFLEVMDSKEGDP 513

[Close]

BLAST of Lsi01G002930 vs. TAIR10
Match: AT5G44750.2 (AT5G44750.2 DNA-directed DNA polymerases)

HSP 1 Score: 265.4 bits (677), Expect = 5.1e-71
Identity = 154/356 (43.26%), Postives = 212/356 (59.55%), Query Frame = 1


Query: 10  PCCKTTWILESVASNKLLSYKVPYQLDQLVSNQPRLSEFFSMTKGLTLEKPKIFMTTEKK 69
           P  K TWI++S+++N+LL + VPYQLDQL   QP+LS FF+    LT +      + +  
Sbjct: 150 PVVKPTWIVDSISANRLLGW-VPYQLDQLNDTQPKLSAFFAPRSHLTPQMASPVTSFQPD 209

Query: 70  YGTEDSLSLVAMNLKDNTLSEVNESIEYRAKMHSDSEMNLQDNADAELNEKS-SDDLEAT 129
            G  ++        ++ +    ++S E R  +  + +    +N   EL E++ + DL+++
Sbjct: 210 TGYSEA--------EEGSSIRADDSEEARDHIDDEIDGVYIENTTPELTEQTGTGDLKSS 269

Query: 130 NLKDTNISDIDVSTEYKPQVCESFEMLPRKDADVGVQKGPSKGKCNYADEEPGIVDVGRA 189
            +    + + D+  +      +S   L     +  V      G  + A            
Sbjct: 270 EMNAEGLGNYDIEEKEVSSELQSTTNLHSTSDNKSVHANGKNGGKSIATAAGS-----ST 329

Query: 190 LWHSTLENPDFVENDFKKSRLHFIGTWRNRYYKC-------LPWSANGSNLYS----NTS 249
             HSTLE+P+FVEN FK SRLHFIGTWRNRY K        L W+ +G N       +T 
Sbjct: 330 RRHSTLEDPNFVENYFKNSRLHFIGTWRNRYRKRFHGSSNGLKWADSGQNTAEMAKKSTI 389

Query: 250 MLLPQDCFFVSVVIRNIPEFKDRPIAVCHSDNPKGTAEISSANYPARAYGVRAGMFVRDA 309
           + +  DCFFVSVVI+N  E  D+P+AVCHSDNPKGTAEISSANYPARAYGV+AGMFVR A
Sbjct: 390 IHIDLDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAEISSANYPARAYGVKAGMFVRHA 449

Query: 310 NALCPHLVIFPYDFKSYEEVADQFYDILHKHCEKVQVVSCDEEFLDISGTNEIDLE 354
             LCP LVI PY+F++YEEVADQFYDILH+HC KVQ +SCDE FLD+S  ++++ E
Sbjct: 450 KDLCPQLVIVPYNFEAYEEVADQFYDILHRHCRKVQALSCDEAFLDVSDLSDVETE 491

[Close]

BLAST of Lsi01G002930 vs. NCBI nr
Match: gi|449438635|ref|XP_004137093.1| (PREDICTED: DNA repair protein REV1 isoform X2 [Cucumis sativus])

HSP 1 Score: 308.5 bits (789), Expect = 1.5e-80
Identity = 188/401 (46.88%), Postives = 223/401 (55.61%), Query Frame = 1


Query: 10  PCCKTTWILESVASNKLLSY------------------------------KVPYQLDQLV 69
           P  K TWIL+SVASNKLLS+                              K+    ++  
Sbjct: 160 PVVKPTWILDSVASNKLLSWVPYQLDQLVNNQPRLSEFFSMKKGPTVEKPKICLTSEKKY 219

Query: 70  SNQPRLSEFFSMTKGLTLEKPK----------------IFMTTEKKYGTEDSLSLVAMNL 129
             +  LS      K  TL +                  +    + K     S  L A  L
Sbjct: 220 ETEDSLSPVAMNLKDTTLSEVNESVGYRAELHSDSEMNLQYNADAKLNETSSDDLEAAKL 279

Query: 130 KDNTLSEVNESIEYRAKMHSDSEMNLQDNADAELNEKSSDDLEATNLKDTNISDIDVSTE 189
           KD ++S+V+ SIEY+ +     EM  Q +AD E+ +  S +      ++  I D+  S+E
Sbjct: 280 KDTSISDVDVSIEYKPQFCGSFEMLPQKDADVEVQKGPSSEKYNYAGEEPGIDDVGQSSE 339

Query: 190 YKPQVCESFEMLPRKDADVGVQKGPSKGKCNYADEEPGIVDVGRALWHSTLENPDFVEND 249
              +   SF          G+      G  N       +      L HSTLENPDFVEN 
Sbjct: 340 ---ENISSFH---------GLSASTHNGSTNSDGSSSSMAAGSSKLQHSTLENPDFVENY 399

Query: 250 FKKSRLHFIGTWRNRYYKCLPWSANGSNLYSN-----------TSMLLPQDCFFVSVVIR 309
           FKKSRLHFIGTWRNRYYK  P  ANGSN  ++           T + +  DCFFVSVVIR
Sbjct: 400 FKKSRLHFIGTWRNRYYKRFPRLANGSNSVTSPINGSSHDQSATIIHVDMDCFFVSVVIR 459

Query: 310 NIPEFKDRPIAVCHSDNPKGTAEISSANYPARAYGVRAGMFVRDANALCPHLVIFPYDFK 354
           NIP+FKDRP+AVCHSDNPKGTAEISSANYPAR+YGV+AGMFVRDA ALCPHLVIFPYDFK
Sbjct: 460 NIPKFKDRPVAVCHSDNPKGTAEISSANYPARSYGVKAGMFVRDAKALCPHLVIFPYDFK 519

[Close]

BLAST of Lsi01G002930 vs. NCBI nr
Match: gi|778724971|ref|XP_011658888.1| (PREDICTED: DNA repair protein REV1 isoform X4 [Cucumis sativus])

HSP 1 Score: 308.5 bits (789), Expect = 1.5e-80
Identity = 188/401 (46.88%), Postives = 223/401 (55.61%), Query Frame = 1


Query: 10  PCCKTTWILESVASNKLLSY------------------------------KVPYQLDQLV 69
           P  K TWIL+SVASNKLLS+                              K+    ++  
Sbjct: 160 PVVKPTWILDSVASNKLLSWVPYQLDQLVNNQPRLSEFFSMKKGPTVEKPKICLTSEKKY 219

Query: 70  SNQPRLSEFFSMTKGLTLEKPK----------------IFMTTEKKYGTEDSLSLVAMNL 129
             +  LS      K  TL +                  +    + K     S  L A  L
Sbjct: 220 ETEDSLSPVAMNLKDTTLSEVNESVGYRAELHSDSEMNLQYNADAKLNETSSDDLEAAKL 279

Query: 130 KDNTLSEVNESIEYRAKMHSDSEMNLQDNADAELNEKSSDDLEATNLKDTNISDIDVSTE 189
           KD ++S+V+ SIEY+ +     EM  Q +AD E+ +  S +      ++  I D+  S+E
Sbjct: 280 KDTSISDVDVSIEYKPQFCGSFEMLPQKDADVEVQKGPSSEKYNYAGEEPGIDDVGQSSE 339

Query: 190 YKPQVCESFEMLPRKDADVGVQKGPSKGKCNYADEEPGIVDVGRALWHSTLENPDFVEND 249
              +   SF          G+      G  N       +      L HSTLENPDFVEN 
Sbjct: 340 ---ENISSFH---------GLSASTHNGSTNSDGSSSSMAAGSSKLQHSTLENPDFVENY 399

Query: 250 FKKSRLHFIGTWRNRYYKCLPWSANGSNLYSN-----------TSMLLPQDCFFVSVVIR 309
           FKKSRLHFIGTWRNRYYK  P  ANGSN  ++           T + +  DCFFVSVVIR
Sbjct: 400 FKKSRLHFIGTWRNRYYKRFPRLANGSNSVTSPINGSSHDQSATIIHVDMDCFFVSVVIR 459

Query: 310 NIPEFKDRPIAVCHSDNPKGTAEISSANYPARAYGVRAGMFVRDANALCPHLVIFPYDFK 354
           NIP+FKDRP+AVCHSDNPKGTAEISSANYPAR+YGV+AGMFVRDA ALCPHLVIFPYDFK
Sbjct: 460 NIPKFKDRPVAVCHSDNPKGTAEISSANYPARSYGVKAGMFVRDAKALCPHLVIFPYDFK 519

[Close]

BLAST of Lsi01G002930 vs. NCBI nr
Match: gi|778724959|ref|XP_011658885.1| (PREDICTED: DNA repair protein REV1 isoform X1 [Cucumis sativus])

HSP 1 Score: 308.5 bits (789), Expect = 1.5e-80
Identity = 188/401 (46.88%), Postives = 223/401 (55.61%), Query Frame = 1


Query: 10  PCCKTTWILESVASNKLLSY------------------------------KVPYQLDQLV 69
           P  K TWIL+SVASNKLLS+                              K+    ++  
Sbjct: 160 PVVKPTWILDSVASNKLLSWVPYQLDQLVNNQPRLSEFFSMKKGPTVEKPKICLTSEKKY 219

Query: 70  SNQPRLSEFFSMTKGLTLEKPK----------------IFMTTEKKYGTEDSLSLVAMNL 129
             +  LS      K  TL +                  +    + K     S  L A  L
Sbjct: 220 ETEDSLSPVAMNLKDTTLSEVNESVGYRAELHSDSEMNLQYNADAKLNETSSDDLEAAKL 279

Query: 130 KDNTLSEVNESIEYRAKMHSDSEMNLQDNADAELNEKSSDDLEATNLKDTNISDIDVSTE 189
           KD ++S+V+ SIEY+ +     EM  Q +AD E+ +  S +      ++  I D+  S+E
Sbjct: 280 KDTSISDVDVSIEYKPQFCGSFEMLPQKDADVEVQKGPSSEKYNYAGEEPGIDDVGQSSE 339

Query: 190 YKPQVCESFEMLPRKDADVGVQKGPSKGKCNYADEEPGIVDVGRALWHSTLENPDFVEND 249
              +   SF          G+      G  N       +      L HSTLENPDFVEN 
Sbjct: 340 ---ENISSFH---------GLSASTHNGSTNSDGSSSSMAAGSSKLQHSTLENPDFVENY 399

Query: 250 FKKSRLHFIGTWRNRYYKCLPWSANGSNLYSN-----------TSMLLPQDCFFVSVVIR 309
           FKKSRLHFIGTWRNRYYK  P  ANGSN  ++           T + +  DCFFVSVVIR
Sbjct: 400 FKKSRLHFIGTWRNRYYKRFPRLANGSNSVTSPINGSSHDQSATIIHVDMDCFFVSVVIR 459

Query: 310 NIPEFKDRPIAVCHSDNPKGTAEISSANYPARAYGVRAGMFVRDANALCPHLVIFPYDFK 354
           NIP+FKDRP+AVCHSDNPKGTAEISSANYPAR+YGV+AGMFVRDA ALCPHLVIFPYDFK
Sbjct: 460 NIPKFKDRPVAVCHSDNPKGTAEISSANYPARSYGVKAGMFVRDAKALCPHLVIFPYDFK 519

[Close]

BLAST of Lsi01G002930 vs. NCBI nr
Match: gi|778724968|ref|XP_011658887.1| (PREDICTED: DNA repair protein REV1 isoform X3 [Cucumis sativus])

HSP 1 Score: 308.5 bits (789), Expect = 1.5e-80
Identity = 188/401 (46.88%), Postives = 223/401 (55.61%), Query Frame = 1


Query: 10  PCCKTTWILESVASNKLLSY------------------------------KVPYQLDQLV 69
           P  K TWIL+SVASNKLLS+                              K+    ++  
Sbjct: 160 PVVKPTWILDSVASNKLLSWVPYQLDQLVNNQPRLSEFFSMKKGPTVEKPKICLTSEKKY 219

Query: 70  SNQPRLSEFFSMTKGLTLEKPK----------------IFMTTEKKYGTEDSLSLVAMNL 129
             +  LS      K  TL +                  +    + K     S  L A  L
Sbjct: 220 ETEDSLSPVAMNLKDTTLSEVNESVGYRAELHSDSEMNLQYNADAKLNETSSDDLEAAKL 279

Query: 130 KDNTLSEVNESIEYRAKMHSDSEMNLQDNADAELNEKSSDDLEATNLKDTNISDIDVSTE 189
           KD ++S+V+ SIEY+ +     EM  Q +AD E+ +  S +      ++  I D+  S+E
Sbjct: 280 KDTSISDVDVSIEYKPQFCGSFEMLPQKDADVEVQKGPSSEKYNYAGEEPGIDDVGQSSE 339

Query: 190 YKPQVCESFEMLPRKDADVGVQKGPSKGKCNYADEEPGIVDVGRALWHSTLENPDFVEND 249
              +   SF          G+      G  N       +      L HSTLENPDFVEN 
Sbjct: 340 ---ENISSFH---------GLSASTHNGSTNSDGSSSSMAAGSSKLQHSTLENPDFVENY 399

Query: 250 FKKSRLHFIGTWRNRYYKCLPWSANGSNLYSN-----------TSMLLPQDCFFVSVVIR 309
           FKKSRLHFIGTWRNRYYK  P  ANGSN  ++           T + +  DCFFVSVVIR
Sbjct: 400 FKKSRLHFIGTWRNRYYKRFPRLANGSNSVTSPINGSSHDQSATIIHVDMDCFFVSVVIR 459

Query: 310 NIPEFKDRPIAVCHSDNPKGTAEISSANYPARAYGVRAGMFVRDANALCPHLVIFPYDFK 354
           NIP+FKDRP+AVCHSDNPKGTAEISSANYPAR+YGV+AGMFVRDA ALCPHLVIFPYDFK
Sbjct: 460 NIPKFKDRPVAVCHSDNPKGTAEISSANYPARSYGVKAGMFVRDAKALCPHLVIFPYDFK 519

[Close]

BLAST of Lsi01G002930 vs. NCBI nr
Match: gi|659073365|ref|XP_008437020.1| (PREDICTED: LOW QUALITY PROTEIN: DNA repair protein REV1 [Cucumis melo])

HSP 1 Score: 298.9 bits (764), Expect = 1.2e-77
Identity = 169/304 (55.59%), Postives = 200/304 (65.79%), Query Frame = 1


Query: 64  MTTEKKYGTEDSLSLVAMNLKDNTLSEVNESIEYRAKMHSDSEMNLQDNADAELNEKSSD 123
           +  + +   + S  L A  LKD ++S+V+ SIEY+       EM  Q +AD E+++  S+
Sbjct: 260 VNADAEMNEKSSDDLEAAKLKDTSISDVDVSIEYKPHFCESFEMLPQKDADVEVHKGPSN 319

Query: 124 DLEATNLKDTNISDIDVSTEYKPQVCESFEMLPRKDADVGVQKGPSKGKCN--YADEEPG 183
             E  N  D     +DV    +  +  SF          G+      G  N  ++D    
Sbjct: 320 --EKYNYVDEEPGIVDVGQSSEENI-SSFH---------GLSASTHNGSSNSYHSDGSSS 379

Query: 184 IVDVGRA-LWHSTLENPDFVENDFKKSRLHFIGTWRNRYYKCLPWSANGSNLYSN----- 243
            +  G + L HSTLENPDFVEN FKKSRLHFIGTWRNRYYK  P  ANGSN  ++     
Sbjct: 380 SMAAGSSKLQHSTLENPDFVENYFKKSRLHFIGTWRNRYYKRFPRLANGSNSVTSHINGS 439

Query: 244 ------TSMLLPQDCFFVSVVIRNIPEFKDRPIAVCHSDNPKGTAEISSANYPARAYGVR 303
                 T + +  DCFFVSVVIRNIP+FKDRP+AVCHSDNPKGTAEISSANYPAR+YGVR
Sbjct: 440 SHHQSATIIHVDMDCFFVSVVIRNIPKFKDRPVAVCHSDNPKGTAEISSANYPARSYGVR 499

Query: 304 AGMFVRDANALCPHLVIFPYDFKSYEEVADQFYDILHKHCEKVQVVSCDEEFLDISGTNE 354
           AGMFVRDA ALCPHLVIFPYDFKSYE VADQFY+ILHKHCEKVQ VSCDE FLDISGTN 
Sbjct: 500 AGMFVRDAKALCPHLVIFPYDFKSYEGVADQFYEILHKHCEKVQAVSCDEAFLDISGTNN 551

The following BLAST results are available for this feature:

BLAST of Lsi01G002930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
REV1_ARATH	9.0e-70	43.26	DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 PE=2 SV=1	[more]
REV1_SCHPO	2.0e-21	36.31	DNA repair protein rev1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G...	[more]
DPO4_ECOLC	2.2e-15	39.81	DNA polymerase IV OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=...	[more]
DPO4_ECOL6	2.2e-15	39.81	DNA polymerase IV OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)...	[more]
DPO4_ECOL5	2.2e-15	39.81	DNA polymerase IV OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=dinB PE=...	[more]

BLAST of Lsi01G002930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6E9_CUCSA	1.0e-80	46.88	DNA repair protein REV1 OS=Cucumis sativus GN=Csa_7G071660 PE=3 SV=1	[more]
M5VPF9_PRUPE	6.5e-75	48.76	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019938mg PE=3 SV=1	[more]
B9RY76_RICCO	2.7e-73	46.74	DNA repair protein REV1 OS=Ricinus communis GN=RCOM_0810900 PE=3 SV=1	[more]
A0A061E160_THECC	3.0e-72	48.21	DNA-directed DNA polymerases, putative OS=Theobroma cacao GN=TCM_007158 PE=4 SV=...	[more]
F6H6A4_VITVI	4.4e-71	47.37	DNA repair protein REV1 OS=Vitis vinifera GN=VIT_03s0091g00200 PE=3 SV=1	[more]

BLAST of Lsi01G002930 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G44750.2	5.1e-71	43.26	DNA-directed DNA polymerases	[more]

BLAST of Lsi01G002930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438635\|ref\|XP_004137093.1\|	1.5e-80	46.88	PREDICTED: DNA repair protein REV1 isoform X2 [Cucumis sativus]	[more]
gi\|778724971\|ref\|XP_011658888.1\|	1.5e-80	46.88	PREDICTED: DNA repair protein REV1 isoform X4 [Cucumis sativus]	[more]
gi\|778724959\|ref\|XP_011658885.1\|	1.5e-80	46.88	PREDICTED: DNA repair protein REV1 isoform X1 [Cucumis sativus]	[more]
gi\|778724968\|ref\|XP_011658887.1\|	1.5e-80	46.88	PREDICTED: DNA repair protein REV1 isoform X3 [Cucumis sativus]	[more]
gi\|659073365\|ref\|XP_008437020.1\|	1.2e-77	55.59	PREDICTED: LOW QUALITY PROTEIN: DNA repair protein REV1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006281	DNA repair

Vocabulary: **INTERPRO**
Term	Definition
IPR001126	UmuC

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0042575	DNA polymerase complex
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0000287	magnesium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G002930.1	Lsi01G002930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001126	UmuC domain	PFAM	PF00817	IMS	coord: 243..350 score: 6.5
IPR001126	UmuC domain	PROFILE	PS50173	UMUC	coord: 237..346 score: 30
None	No IPR available	GENE3D	G3DSA:3.30.70.270		coord: 301..348 score: 3.4
None	No IPR available	PANTHER	PTHR11076	DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER	coord: 201..345 score: 1.5E-61coord: 13..69 score: 1.5
None	No IPR available	PANTHER	PTHR11076:SF12	DNA REPAIR PROTEIN REV1	coord: 13..69 score: 1.5E-61coord: 201..345 score: 1.5
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 242..347 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G002930	Bottle gourd (USVL1VR-Ls)	lsilsiB066
Lsi01G002930	Cucumber (Gy14) v1	cgylsiB022
Lsi01G002930	Cucumber (Gy14) v1	cgylsiB193
Lsi01G002930	Cucurbita maxima (Rimu)	cmalsiB199
Lsi01G002930	Cucurbita maxima (Rimu)	cmalsiB368
Lsi01G002930	Cucurbita maxima (Rimu)	cmalsiB602
Lsi01G002930	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G002930	Cucurbita moschata (Rifu)	cmolsiB189
Lsi01G002930	Cucurbita moschata (Rifu)	cmolsiB354
Lsi01G002930	Cucurbita moschata (Rifu)	cmolsiB588
Lsi01G002930	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G002930	Cucurbita pepo (Zucchini)	cpelsiB049
Lsi01G002930	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G002930	Cucurbita pepo (Zucchini)	cpelsiB415
Lsi01G002930	Wild cucumber (PI 183967)	cpilsiB018
Lsi01G002930	Wild cucumber (PI 183967)	cpilsiB439
Lsi01G002930	Cucumber (Chinese Long) v2	culsiB019
Lsi01G002930	Cucumber (Chinese Long) v2	culsiB434
Lsi01G002930	Melon (DHL92) v3.5.1	lsimeB127
Lsi01G002930	Melon (DHL92) v3.5.1	lsimeB149
Lsi01G002930	Watermelon (Charleston Gray)	lsiwcgB127
Lsi01G002930	Watermelon (Charleston Gray)	lsiwcgB133
Lsi01G002930	Watermelon (97103) v1	lsiwmB136
Lsi01G002930	Watermelon (97103) v1	lsiwmB144
Lsi01G002930	Cucumber (Gy14) v2	cgyblsiB015
Lsi01G002930	Cucumber (Gy14) v2	cgyblsiB099
Lsi01G002930	Cucumber (Gy14) v2	cgyblsiB398
Lsi01G002930	Melon (DHL92) v3.6.1	lsimedB132
Lsi01G002930	Melon (DHL92) v3.6.1	lsimedB138
Lsi01G002930	Melon (DHL92) v3.6.1	lsimedB156
Lsi01G002930	Silver-seed gourd	carlsiB132
Lsi01G002930	Silver-seed gourd	carlsiB585
Lsi01G002930	Silver-seed gourd	carlsiB496
Lsi01G002930	Silver-seed gourd	carlsiB865
Lsi01G002930	Cucumber (Chinese Long) v3	cuclsiB020
Lsi01G002930	Cucumber (Chinese Long) v3	cuclsiB122
Lsi01G002930	Cucumber (Chinese Long) v3	cuclsiB462
Lsi01G002930	Watermelon (97103) v2	lsiwmbB115
Lsi01G002930	Watermelon (97103) v2	lsiwmbB130
Lsi01G002930	Wax gourd	lsiwgoB166
Lsi01G002930	Wax gourd	lsiwgoB168
Lsi01G002930	Wax gourd	lsiwgoB190