Cucsa.398120 (gene) Cucumber (Gy14) v1

NameCucsa.398120
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionDNA polymerase
Locationscaffold04158 : 658759 .. 660925 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAAACGTCTTTTTTTCAGCAATTTGGATTACAGGCAGCCCACAGAGAATCAATATTTTGATTTGGATTATGGCCTTCAGGCCCCTCAATAGCTCTGAAATCTTGCAAAAGAAAGCACCCAATAAAAGCCTCTCCCCCTCGATCTGTCCTCTATGTTTGAAGGTTAGTGAGAATCTTTCTCATATTTTCCTGAACGGTCCTGTCTCTTCCTTCTGTTGGGTAAGAATTTTCTCATTGTTTAATTTAACTTGGGTATTTGATGTTTCACTAAGTGCTATTCTGTTGGTCCAAGTTTGCCCAAATCAAGTATCATATGGGAAAATTTGTCAAAAGCTTTACTTTCAGAATTATGGTTCAAACAACAACGTATCTTCCATGATAAAGCAAGACCAAGGGCTGAAATTATGTATGCAGCAGAACTTAATGTTGCAGCTTGATGTCCCCCTAAAAAGGAGTTCGTTAATTATTCCATCCAAGACACTTACTTTAATTGGGCTGCTTTTCTTTCTCAACCTGCCTAATCCTATGCTGCCTCAGTTTCAATGTTTGCAGATTACACAAACTGAAGCCCTCTATTGCTTTTGGAGCCTTGAAGGATTGCCCCCTGTTTTAGTTTGCTTTTTTGTCCCCCCCCCACACCCACATTTCTTGTCGTTTTCTTCCAGTCCCATTCCGTTTTCTGGACCTTTGTACTAAGCTGGATGCTTTTATTATTCTTTCAATTGGTTGTGCTTGGGATATGATGTTTGGCACTATGGGGGTGTTAACCTAGTTGAGATGTCTAGGACTCCCTTGAATACTACTTCTTTTTAGCTCTCTTTGTATAAATCTCTTGTACGTTGAGTTCATATTAATAAAGAAGTTTTCATCTCCGTTTTAAAAAAAAAAAGAAGATGCTTAAAAGAAGCTGAAATTGCATAATTTCAATCCTTACTCTCCCTCTTCTCATCTGAAAAAGTTTTTGATTATGAAGACCACAAAATTTGGTCAATTGACCACCAAGGCCGTTTTACTGTTAAATTTTTCTCGGCGCACTTGCATTCCCCCCCTCCAATGGATGAACGTATATTTAAAGCCTTGTGGAAGTCAAACAGCCCCCGGAGAGTTAATATTCTTATTTGGGTCATGATTTTTGGGTCCCTTAACAGTGCTGATATTCTCCAAAAGATGGTTCCTAACAAGTGTTTACTACCCTCTGTCCCCATTGCTTGAAGGCTAATGAGACTTTACTCCATCTCTTTTTGCTATGCCCTTTCTCTTCTTTCTGGTGGAACAGATTCTTCTCCATTTTCAACATTGCTTGGGTTTTTGATGGCTCCCTTTGTTCCTCAGTTCTTCAGCTTTTGGAGGGTCCACCGCTTCCAAAGAAGCCAAGACTAATATGGTTGAATTTGCTAAAAGCTATCCTCTCTGAACTGTGGTTTGAGAGAAACCAGCTGATTTTTCATGACAAAGGAAAACCAAGTCCAAAAACCCTTCTCTCCGCCGAGCGAAATGCAGCAGCTTGGTGTTCCTTGAACAAGGATTCTGGGGCTTACTCTATTCAAGATACTTGTCTCAATTGGGCAGCTTTTCTTTCCCAACCAACCCTTTAATCTTTGTTTTGGCAGTCCTTTTTTGGAGCTGATTATCTACTCTGTTTTGGATCTTTCAGCAGCTGTTTTTGTATTGCCTTTATTTTATCATTTTCTCTGTCTTGGCCCTGTGTACTTATGCTGGACTCATGTATGTATTATCTAGTACATCTTCTATTTTGGTCAGTCTTATAATTGGGATATGAAGTTTTGGTGCTAAGGGGGTGTCAACCTAGTTAAGATGCTTGGGTACACCTCGCCTTTTGTTCTTTAGGCTTCTTTATTACTCTCAATGTATATACCTCCTTTGAGATTTTTTTTATTAATAAAGAAGTTTGTCTCCTTTTCAAAAAATAAAAAACAATCAATGAAATCGTTCCTTACTAAGAAAATGTTCAGCAATTTGAATTATAGAAGACAAAACATGTAAATCACCGTGAAAACTTTAGAGCATGATCTTTTGTTATGCGAATTTATATTTCCTCTGACTCATACATGCACCACTACAAACTTCCAGAAATTCCAGAAGTCTGGTTCCCTTCAAGCTTAAATGTGTGCTACTATCAGATTTGATCAGTGCTATACTTTCATGA

mRNA sequence

ataaacgtctttttttcagcaatttggattacaggcagcccacagagaatcaatattttgatttggattatggccttcaggcccctcaatagctctgaaatcttgcaaaagaaagcacccaataaaagcctctccccctcgatctgtcctctatgtttgaaggctaatgagactttactccatctctttttgctatgccctttctcttctttctggtggaacagattcttctccattttcaacattgcttgggtttttgatggctccctttgttcctcagttcttcagcttttggagggtccaccgcttccaaagaagccaagactaatatggttgaatttgctaaaagctatcctctctgaactgtggtttgagagaaaccagctgatttttcatgacaaaggaaaaccaaCTGATTATCTACTCTGTTTTGGATCTTTCAGCAGCTGTTTTTGTATTGCCTTTATTTTATCATTTTCTCTGTCTTGGCCCTGTGTACTTATGCTGGACTCATATTTGATCAGTGCTATACTTTCATGA

Coding sequence (CDS)

ATAAACGTCTTTTTTTCAGCAATTTGGATTACAGGCAGCCCACAGAGAATCAATATTTTGATTTGGATTATGGCCTTCAGGCCCCTCAATAGCTCTGAAATCTTGCAAAAGAAAGCACCCAATAAAAGCCTCTCCCCCTCGATCTGTCCTCTATGTTTGAAGGCTAATGAGACTTTACTCCATCTCTTTTTGCTATGCCCTTTCTCTTCTTTCTGGTGGAACAGATTCTTCTCCATTTTCAACATTGCTTGGGTTTTTGATGGCTCCCTTTGTTCCTCAGTTCTTCAGCTTTTGGAGGGTCCACCGCTTCCAAAGAAGCCAAGACTAATATGGTTGAATTTGCTAAAAGCTATCCTCTCTGAACTGTGGTTTGAGAGAAACCAGCTGATTTTTCATGACAAAGGAAAACCAACTGATTATCTACTCTGTTTTGGATCTTTCAGCAGCTGTTTTTGTATTGCCTTTATTTTATCATTTTCTCTGTCTTGGCCCTGTGTACTTATGCTGGACTCATATTTGATCAGTGCTATACTTTCATGA

Protein sequence

INVFFSAIWITGSPQRINILIWIMAFRPLNSSEILQKKAPNKSLSPSICPLCLKANETLLHLFLLCPFSSFWWNRFFSIFNIAWVFDGSLCSSVLQLLEGPPLPKKPRLIWLNLLKAILSELWFERNQLIFHDKGKPTDYLLCFGSFSSCFCIAFILSFSLSWPCVLMLDSYLISAILS*
BLAST of Cucsa.398120 vs. TrEMBL
Match: A5BCI7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029474 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 9.7e-19
Identity = 50/148 (33.78%), Postives = 81/148 (54.73%), Query Frame = 1

Query: 8    IWITGSPQRINILIWIMAFRPLNSSEILQKKAPNKSLSPSICPLCLKANETLLHLFLLCP 67
            +W    P ++   +W++A + +N++++LQ + P K+LSP IC LC+K  ET+ HLFL C 
Sbjct: 1714 VWNAQVPFKVKSFVWLVAHKKVNTNDLLQLRRPYKALSPDICKLCMKHGETVDHLFLHCS 1773

Query: 68   FSSFWWNRFFSIFNIAWVFDGSLCSSVLQLLEGPPLPKKPRLIWLNLLKAILSELWFERN 127
             +   W+R F    + WV   S+   +     G    K+  ++W N   AI+  +W ERN
Sbjct: 1774 LTIGLWHRLFQSAKMDWVSPRSISDMLSSNFNGFGFSKRGIVLWQNACIAIMWVVWRERN 1833

Query: 128  QLIFHDKGKPTDYL---LCFGSFSSCFC 153
              IF DK + ++YL   +CF +    FC
Sbjct: 1834 ARIFEDKARNSEYLWDSICFLTSFWAFC 1861

BLAST of Cucsa.398120 vs. TrEMBL
Match: A5BI72_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000131 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-18
Identity = 49/148 (33.11%), Postives = 81/148 (54.73%), Query Frame = 1

Query: 8   IWITGSPQRINILIWIMAFRPLNSSEILQKKAPNKSLSPSICPLCLKANETLLHLFLLCP 67
           +W    P ++   +W++A + +N++++LQ + P K+LSP IC LC+K  ET+ HLFL C 
Sbjct: 604 VWNAQVPFKVKSFVWLVAHKKVNTNDLLQLRRPYKALSPDICKLCMKHGETVDHLFLHCS 663

Query: 68  FSSFWWNRFFSIFNIAWVFDGSLCSSVLQLLEGPPLPKKPRLIWLNLLKAILSELWFERN 127
            +   W+R F    + WV   S+   +     G    K+  ++W N   A++  +W ERN
Sbjct: 664 LTIGLWHRLFQSAKMDWVSPRSISDMLASNFNGFGFSKRGIVLWQNACIALMWVVWRERN 723

Query: 128 QLIFHDKGKPTDYL---LCFGSFSSCFC 153
             IF DK + ++YL   +CF +    FC
Sbjct: 724 ARIFEDKARNSEYLWDSICFLTSFWAFC 751

BLAST of Cucsa.398120 vs. TrEMBL
Match: A5AI05_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010721 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.2e-18
Identity = 53/166 (31.93%), Postives = 86/166 (51.81%), Query Frame = 1

Query: 8    IWITGSPQRINILIWIMAFRPLNSSEILQKKAPNKSLSPSICPLCLKANETLLHLFLLCP 67
            +W    P ++   +W++A + +N++++LQ + P K+LSP IC LC+K  ET+ HLFL C 
Sbjct: 863  VWNAQVPFKVKSFVWLVAHKKVNTNDLLQLRRPYKALSPDICKLCMKYGETVDHLFLHCS 922

Query: 68   FSSFWWNRFFSIFNIAWVFDGSLCSSVLQLLEGPPLPKKPRLIWLNLLKAILSELWFERN 127
             +   W+R F    + WV   S+   +     G    K+  ++W N   A++  +W ERN
Sbjct: 923  LTMGLWHRLFQSVKMDWVSPRSISDMLSSNFNGFGSSKRGIVLWQNACIALMWVVWRERN 982

Query: 128  QLIFHDKGKPTDYL---LCFGSFSSCFCIAFILSFSLSWPCVLMLD 171
              IF DK +  +YL   +CF +    FC        L+   +L LD
Sbjct: 983  ARIFEDKARNXEYLWDSICFLTSFWAFCSKVFKGIPLN---ILQLD 1025

BLAST of Cucsa.398120 vs. TrEMBL
Match: A5BTG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030741 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 8.2e-18
Identity = 48/148 (32.43%), Postives = 82/148 (55.41%), Query Frame = 1

Query: 8    IWITGSPQRINILIWIMAFRPLNSSEILQKKAPNKSLSPSICPLCLKANETLLHLFLLCP 67
            +W +  P ++   +W++A + LN++++LQ + P+K+LSP+IC LC+K  ET+ HLFL C 
Sbjct: 1138 VWNSQVPFKVKSFVWLVAHKKLNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCS 1197

Query: 68   FSSFWWNRFFSIFNIAWVFDGSLCSSVLQLLEGPPLPKKPRLIWLNLLKAILSELWFERN 127
             +   W+R F +  + WV   S+         G    K+  ++W +   A++  +W ERN
Sbjct: 1198 LTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVWRERN 1257

Query: 128  QLIFHDKGKPTDYL---LCFGSFSSCFC 153
              IF DK + +  L   +CF +    FC
Sbjct: 1258 ARIFEDKARNSGCLWDSICFLASLWAFC 1285

BLAST of Cucsa.398120 vs. TrEMBL
Match: A5AG22_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040551 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.8e-17
Identity = 46/134 (34.33%), Postives = 75/134 (55.97%), Query Frame = 1

Query: 8   IWITGSPQRINILIWIMAFRPLNSSEILQKKAPNKSLSPSICPLCLKANETLLHLFLLCP 67
           +W    P ++   +W++A + +N++++LQ + P K+LSP IC LC+K  ET+ HLFL C 
Sbjct: 403 VWNAQVPFKVKSFVWLVAHKKVNTNDLLQLRRPYKTLSPDICKLCMKHGETVDHLFLHCS 462

Query: 68  FSSFWWNRFFSIFNIAWVFDGSLCSSVLQLLEGPPLPKKPRLIWLNLLKAILSELWFERN 127
            +   W+R F    + WV   S+   +     G    K+  ++W N   AI+  +W ERN
Sbjct: 463 LTIGLWHRLFQSAKMDWVSLRSISDMLSSNFNGFGFSKRGIVLWQNACIAIMWVVWRERN 522

Query: 128 QLIFHDKGKPTDYL 142
             IF DK + ++YL
Sbjct: 523 ARIFEDKARNSEYL 536

BLAST of Cucsa.398120 vs. NCBI nr
Match: gi|147811389|emb|CAN65484.1| (hypothetical protein VITISV_029474 [Vitis vinifera])

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-18
Identity = 50/148 (33.78%), Postives = 81/148 (54.73%), Query Frame = 1

Query: 8    IWITGSPQRINILIWIMAFRPLNSSEILQKKAPNKSLSPSICPLCLKANETLLHLFLLCP 67
            +W    P ++   +W++A + +N++++LQ + P K+LSP IC LC+K  ET+ HLFL C 
Sbjct: 1714 VWNAQVPFKVKSFVWLVAHKKVNTNDLLQLRRPYKALSPDICKLCMKHGETVDHLFLHCS 1773

Query: 68   FSSFWWNRFFSIFNIAWVFDGSLCSSVLQLLEGPPLPKKPRLIWLNLLKAILSELWFERN 127
             +   W+R F    + WV   S+   +     G    K+  ++W N   AI+  +W ERN
Sbjct: 1774 LTIGLWHRLFQSAKMDWVSPRSISDMLSSNFNGFGFSKRGIVLWQNACIAIMWVVWRERN 1833

Query: 128  QLIFHDKGKPTDYL---LCFGSFSSCFC 153
              IF DK + ++YL   +CF +    FC
Sbjct: 1834 ARIFEDKARNSEYLWDSICFLTSFWAFC 1861

BLAST of Cucsa.398120 vs. NCBI nr
Match: gi|147839313|emb|CAN72359.1| (hypothetical protein VITISV_000131 [Vitis vinifera])

HSP 1 Score: 101.3 bits (251), Expect = 1.8e-18
Identity = 49/148 (33.11%), Postives = 81/148 (54.73%), Query Frame = 1

Query: 8   IWITGSPQRINILIWIMAFRPLNSSEILQKKAPNKSLSPSICPLCLKANETLLHLFLLCP 67
           +W    P ++   +W++A + +N++++LQ + P K+LSP IC LC+K  ET+ HLFL C 
Sbjct: 604 VWNAQVPFKVKSFVWLVAHKKVNTNDLLQLRRPYKALSPDICKLCMKHGETVDHLFLHCS 663

Query: 68  FSSFWWNRFFSIFNIAWVFDGSLCSSVLQLLEGPPLPKKPRLIWLNLLKAILSELWFERN 127
            +   W+R F    + WV   S+   +     G    K+  ++W N   A++  +W ERN
Sbjct: 664 LTIGLWHRLFQSAKMDWVSPRSISDMLASNFNGFGFSKRGIVLWQNACIALMWVVWRERN 723

Query: 128 QLIFHDKGKPTDYL---LCFGSFSSCFC 153
             IF DK + ++YL   +CF +    FC
Sbjct: 724 ARIFEDKARNSEYLWDSICFLTSFWAFC 751

BLAST of Cucsa.398120 vs. NCBI nr
Match: gi|147845854|emb|CAN80093.1| (hypothetical protein VITISV_010721 [Vitis vinifera])

HSP 1 Score: 100.5 bits (249), Expect = 3.1e-18
Identity = 53/166 (31.93%), Postives = 86/166 (51.81%), Query Frame = 1

Query: 8    IWITGSPQRINILIWIMAFRPLNSSEILQKKAPNKSLSPSICPLCLKANETLLHLFLLCP 67
            +W    P ++   +W++A + +N++++LQ + P K+LSP IC LC+K  ET+ HLFL C 
Sbjct: 863  VWNAQVPFKVKSFVWLVAHKKVNTNDLLQLRRPYKALSPDICKLCMKYGETVDHLFLHCS 922

Query: 68   FSSFWWNRFFSIFNIAWVFDGSLCSSVLQLLEGPPLPKKPRLIWLNLLKAILSELWFERN 127
             +   W+R F    + WV   S+   +     G    K+  ++W N   A++  +W ERN
Sbjct: 923  LTMGLWHRLFQSVKMDWVSPRSISDMLSSNFNGFGSSKRGIVLWQNACIALMWVVWRERN 982

Query: 128  QLIFHDKGKPTDYL---LCFGSFSSCFCIAFILSFSLSWPCVLMLD 171
              IF DK +  +YL   +CF +    FC        L+   +L LD
Sbjct: 983  ARIFEDKARNXEYLWDSICFLTSFWAFCSKVFKGIPLN---ILQLD 1025

BLAST of Cucsa.398120 vs. NCBI nr
Match: gi|147815645|emb|CAN61757.1| (hypothetical protein VITISV_030741 [Vitis vinifera])

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-17
Identity = 48/148 (32.43%), Postives = 82/148 (55.41%), Query Frame = 1

Query: 8    IWITGSPQRINILIWIMAFRPLNSSEILQKKAPNKSLSPSICPLCLKANETLLHLFLLCP 67
            +W +  P ++   +W++A + LN++++LQ + P+K+LSP+IC LC+K  ET+ HLFL C 
Sbjct: 1138 VWNSQVPFKVKSFVWLVAHKKLNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCS 1197

Query: 68   FSSFWWNRFFSIFNIAWVFDGSLCSSVLQLLEGPPLPKKPRLIWLNLLKAILSELWFERN 127
             +   W+R F +  + WV   S+         G    K+  ++W +   A++  +W ERN
Sbjct: 1198 LTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVWRERN 1257

Query: 128  QLIFHDKGKPTDYL---LCFGSFSSCFC 153
              IF DK + +  L   +CF +    FC
Sbjct: 1258 ARIFEDKARNSGCLWDSICFLASLWAFC 1285

BLAST of Cucsa.398120 vs. NCBI nr
Match: gi|147844292|emb|CAN80039.1| (hypothetical protein VITISV_040551 [Vitis vinifera])

HSP 1 Score: 97.4 bits (241), Expect = 2.6e-17
Identity = 46/134 (34.33%), Postives = 75/134 (55.97%), Query Frame = 1

Query: 8   IWITGSPQRINILIWIMAFRPLNSSEILQKKAPNKSLSPSICPLCLKANETLLHLFLLCP 67
           +W    P ++   +W++A + +N++++LQ + P K+LSP IC LC+K  ET+ HLFL C 
Sbjct: 403 VWNAQVPFKVKSFVWLVAHKKVNTNDLLQLRRPYKTLSPDICKLCMKHGETVDHLFLHCS 462

Query: 68  FSSFWWNRFFSIFNIAWVFDGSLCSSVLQLLEGPPLPKKPRLIWLNLLKAILSELWFERN 127
            +   W+R F    + WV   S+   +     G    K+  ++W N   AI+  +W ERN
Sbjct: 463 LTIGLWHRLFQSAKMDWVSLRSISDMLSSNFNGFGFSKRGIVLWQNACIAIMWVVWRERN 522

Query: 128 QLIFHDKGKPTDYL 142
             IF DK + ++YL
Sbjct: 523 ARIFEDKARNSEYL 536

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A5BCI7_VITVI9.7e-1933.78Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029474 PE=4 SV=1[more]
A5BI72_VITVI1.3e-1833.11Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000131 PE=4 SV=1[more]
A5AI05_VITVI2.2e-1831.93Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010721 PE=4 SV=1[more]
A5BTG1_VITVI8.2e-1832.43Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030741 PE=4 SV=1[more]
A5AG22_VITVI1.8e-1734.33Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040551 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|147811389|emb|CAN65484.1|1.4e-1833.78hypothetical protein VITISV_029474 [Vitis vinifera][more]
gi|147839313|emb|CAN72359.1|1.8e-1833.11hypothetical protein VITISV_000131 [Vitis vinifera][more]
gi|147845854|emb|CAN80093.1|3.1e-1831.93hypothetical protein VITISV_010721 [Vitis vinifera][more]
gi|147815645|emb|CAN61757.1|1.2e-1732.43hypothetical protein VITISV_030741 [Vitis vinifera][more]
gi|147844292|emb|CAN80039.1|2.6e-1734.33hypothetical protein VITISV_040551 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026960RVT-Znf
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.398120.1Cucsa.398120.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 5..73
score: 5.1

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None