Cucsa.394520 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.394520
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionEthylene-responsive transcription factor
Locationscaffold04100 : 423364 .. 423930 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTACCGTGGCGTCCGTCGCAGGCCTTGGGGCCGTTATGCAGCCGAGATTAGAGACCCTCAGTCTAAAGAAAGAAGATGGCTTGGAACTTTCGATACTGCTGAAGAAGCTGCACGTGCTTACGACTGCGCTGCACGGTCCATGCGTGGCCTCAAAGCTCGCACCAATTTCGTTTACCCTTCTTCTCCACCCGCCCCTCATTCCCTCTCCTCCGACGATTACTTAATCCCTCGCTTCAATTTCCCTCCTAAACACTCTCTCCCACGCCTTAACTCTTCTAATTGGCCCCTTTTTTCAACTCCAAATCGTGGGCCTGACTTCTTATGGTCCGGTCATGCACAGAGGATCAACACCGCTTCTCCCACTCTCGACATGCTTCTCCTTCGTGATTTCCTCAATTTCCCTTCTTCCAATTATAATCATTCCTCCAAACCCTCTTATTCTATTAATACTACTACTAATAATAATAGCACTACCAAAATAACTCCTCCTCCCCCTCCTCCTGAAAATTACTCCTCTGAATTTCTCCCCAAGGACTCCCCCGATTCCGGTTTATTGGAAGAG

mRNA sequence

ATGAGGTACCGTGGCGTCCGTCGCAGGCCTTGGGGCCGTTATGCAGCCGAGATTAGAGACCCTCAGTCTAAAGAAAGAAGATGGCTTGGAACTTTCGATACTGCTGAAGAAGCTGCACGTGCTTACGACTGCGCTGCACGGTCCATGCGTGGCCTCAAAGCTCGCACCAATTTCGTTTACCCTTCTTCTCCACCCGCCCCTCATTCCCTCTCCTCCGACGATTACTTAATCCCTCGCTTCAATTTCCCTCCTAAACACTCTCTCCCACGCCTTAACTCTTCTAATTGGCCCCTTTTTTCAACTCCAAATCGTGGGCCTGACTTCTTATGGTCCGGTCATGCACAGAGGATCAACACCGCTTCTCCCACTCTCGACATGCTTCTCCTTCGTGATTTCCTCAATTTCCCTTCTTCCAATTATAATCATTCCTCCAAACCCTCTTATTCTATTAATACTACTACTAATAATAATAGCACTACCAAAATAACTCCTCCTCCCCCTCCTCCTGAAAATTACTCCTCTGAATTTCTCCCCAAGGACTCCCCCGATTCCGGTTTATTGGAAGAG

Coding sequence (CDS)

ATGAGGTACCGTGGCGTCCGTCGCAGGCCTTGGGGCCGTTATGCAGCCGAGATTAGAGACCCTCAGTCTAAAGAAAGAAGATGGCTTGGAACTTTCGATACTGCTGAAGAAGCTGCACGTGCTTACGACTGCGCTGCACGGTCCATGCGTGGCCTCAAAGCTCGCACCAATTTCGTTTACCCTTCTTCTCCACCCGCCCCTCATTCCCTCTCCTCCGACGATTACTTAATCCCTCGCTTCAATTTCCCTCCTAAACACTCTCTCCCACGCCTTAACTCTTCTAATTGGCCCCTTTTTTCAACTCCAAATCGTGGGCCTGACTTCTTATGGTCCGGTCATGCACAGAGGATCAACACCGCTTCTCCCACTCTCGACATGCTTCTCCTTCGTGATTTCCTCAATTTCCCTTCTTCCAATTATAATCATTCCTCCAAACCCTCTTATTCTATTAATACTACTACTAATAATAATAGCACTACCAAAATAACTCCTCCTCCCCCTCCTCCTGAAAATTACTCCTCTGAATTTCTCCCCAAGGACTCCCCCGATTCCGGTTTATTGGAAGAG

Protein sequence

MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVYPSSPPAPHSLSSDDYLIPRFNFPPKHSLPRLNSSNWPLFSTPNRGPDFLWSGHAQRINTASPTLDMLLLRDFLNFPSSNYNHSSKPSYSINTTTNNNSTTKITPPPPPPENYSSEFLPKDSPDSGLLEE
Homology
[Close]
BLAST of Cucsa.394520 vs. Swiss-Prot
Match: ESR1_ARATH (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 8.9e-32
Identity = 89/191 (46.60%), Postives = 113/191 (59.16%), Query Frame = 1 

Query: 2   RYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVYP 61
           RYRGVRRRPWGRYAAEIRDP SKERRWLGTFDTAE+AA AYD AAR+ RG KARTNF YP
Sbjct: 56  RYRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNFTYP 115

Query: 62  SSPPAPHSLSSDDYLIPRFNFPPKHSLPRLNSSNWPLFSTP--NRGPDFLWSGHAQRI-N 121
           ++   P          PRF+F  K S P   S+  PL S P  +   +F  +  AQRI N
Sbjct: 116 TAVIMPE---------PRFSFSNKKSSP---SARCPLPSLPLDSSTQNFYGAPAAQRIYN 175

Query: 122 TASPTLDMLLLRDFLNFPSSNYNHSSKPSYSINTTTNNNSTTKITPPPPPPENYSSEFLP 181
           T S     + LRD     S +   ++  + S N ++++ S +K           +  F P
Sbjct: 176 TQS-----IFLRD----ASCSSRKTTPYNNSFNGSSSSYSASKTACVSYSENENNESFFP 225

Query: 182 KDSPDSGLLEE 190
           ++S D+GLL+E
Sbjct: 236 EESSDTGLLQE 225

[Close]
BLAST of Cucsa.394520 vs. Swiss-Prot
Match: ESR2_ARATH (Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.7e-27
Identity = 63/84 (75.00%), Postives = 66/84 (78.57%), Query Frame = 1 

Query: 1   MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVY 60
           +RYRGVRRRPWGRYAAEIRDP SKERRWLGTFDTAEEAA AYDCAAR+MRGLKARTNFVY
Sbjct: 56  IRYRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVY 115

Query: 61  PSSPPAPHSLSSDDYLIPRFNFPP 85
           P         S D Y    F+ PP
Sbjct: 116 PMP-------SLDSYHHRIFSSPP 132

[Close]
BLAST of Cucsa.394520 vs. Swiss-Prot
Match: LEP_ARATH (Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.8e-24
Identity = 61/97 (62.89%), Postives = 66/97 (68.04%), Query Frame = 1 

Query: 2   RYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVYP 61
           R+ GVRRRPWGRYAAEIRDP +KER WLGTFDTAEEAA AYD AARSMRG +ARTNFVY 
Sbjct: 19  RFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAARSMRGTRARTNFVYS 78

Query: 62  SSPPAPHSLSSDDYLIPRFNFPPKHSLPRLNSSNWPL 99
             PP     SS    I   + PP    P    SN P+
Sbjct: 79  DMPP-----SSSVTSIVSPDDPPPPPPPPAPPSNDPV 110

[Close]
BLAST of Cucsa.394520 vs. Swiss-Prot
Match: ERF87_ARATH (Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.2e-22
Identity = 59/101 (58.42%), Postives = 67/101 (66.34%), Query Frame = 1 

Query: 1   MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVY 60
           ++Y GVRRRPWGRYAAEIR+P +KER WLGTFDTAEEAA AYD AARS+RGL ARTNFVY
Sbjct: 37  IKYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNFVY 96

Query: 61  PSSPPAPHSLS------SDDYLIPRFNFPPKHSLPRLNSSN 96
              P      S      S  ++   FN  P   L   NS+N
Sbjct: 97  SDMPRGSSVTSFVSPDESQRFISELFN--PPSQLEATNSNN 135

[Close]
BLAST of Cucsa.394520 vs. Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.2e-22
Identity = 74/178 (41.57%), Postives = 96/178 (53.93%), Query Frame = 1 

Query: 1   MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVY 60
           +R+RGVR+RPWGR+AAEIRDP  K R WLGTFD+AEEAARAYD AAR++RG KA+TNF  
Sbjct: 26  IRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFPI 85

Query: 61  PSSPPAPHSLSSDDYLIPRFNFPPKHSLPRLNSSNWPLFSTPNRGPDFLWSGHAQRINTA 120
            SS P P +L        RFN      +   N +    F         L++ H Q+    
Sbjct: 86  DSSSPPPPNL--------RFN-----QIRNQNQNQVDPFMDHR-----LFTDHQQQF--- 145

Query: 121 SPTLDMLLLRDFLNFPSSNYNHSSKPSYS-INTTTNNNSTTKITPPPPP--PENYSSE 176
                       +N P+S+   S+  S+S    TT   +TTK  P  PP  PE+  S+
Sbjct: 146 ----------PIVNRPTSSSMSSTVESFSGPRPTTMKPATTKRYPRTPPVVPEDCHSD 172

[Close]
BLAST of Cucsa.394520 vs. TrEMBL
Match: A0A0A0LMT0_CUCSA (AP2/ERF domain-containing transcription factor OS=Cucumis sativus GN=Csa_2G349090 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 6.2e-109
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1 

Query: 1   MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVY 60
           MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVY
Sbjct: 73  MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVY 132

Query: 61  PSSPPAPHSLSSDDYLIPRFNFPPKHSLPRLNSSNWPLFSTPNRGPDFLWSGHAQRINTA 120
           PSSPPAPHSLSSDDYLIPRFNFPPKHSLPRLNSSNWPLFSTPNRGPDFLWSGHAQRINTA
Sbjct: 133 PSSPPAPHSLSSDDYLIPRFNFPPKHSLPRLNSSNWPLFSTPNRGPDFLWSGHAQRINTA 192

Query: 121 SPTLDMLLLRDFLNFPSSNYNHSSKPSYSINTTTNNNSTTKITPPPPPPENYSSEFLPKD 180
           SPTLDMLLLRDFLNFPSSNYNHSSKPSYSINTTTNNNSTTKITPPPPPPENYSSEFLPKD
Sbjct: 193 SPTLDMLLLRDFLNFPSSNYNHSSKPSYSINTTTNNNSTTKITPPPPPPENYSSEFLPKD 252

Query: 181 SPDSGLLEE 190
           SPDSGLLEE
Sbjct: 253 SPDSGLLEE 261

[Close]
BLAST of Cucsa.394520 vs. TrEMBL
Match: W9RN47_9ROSA (Ethylene-responsive transcription factor OS=Morus notabilis GN=L484_027718 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.6e-41
Identity = 115/229 (50.22%), Postives = 135/229 (58.95%), Query Frame = 1 

Query: 1   MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVY 60
           MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAA AYDCAAR+MRG+KARTNFVY
Sbjct: 74  MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGIKARTNFVY 133

Query: 61  PSSPPAPHSLSSDDYL--IPRFNFPPKHSLPRLNSSNWPLFSTPNRGPDFLWS--GHAQR 120
           P+SPP P ++   D+L  +P F F  K S P + S      S+ +  P   WS   H+  
Sbjct: 134 PASPP-PSAVVIADHLTTLPPFAF-TKQSQPSIKSFT---TSSTSVNPSANWSRFSHSTS 193

Query: 121 INTASPTLDMLLLRDFLNFPSSNYNHSSKPSY----------------------SINTTT 180
            +   P  +MLLLRDF+  PSSN N +  PS+                      SI+TTT
Sbjct: 194 NDHRLPQRNMLLLRDFI-APSSNPNPNPNPSFFSPQTLYSADYNQFSHNTNGSSSISTTT 253

Query: 181 N--------------NNSTTKITPPPPPPENYSSEFLPKDSPDSGLLEE 190
           +              N  TT IT   P  E+  SEF PK+  DSGLLEE
Sbjct: 254 SSSISTTNLQNLDQVNTKTTVITTAQPDDED-CSEFFPKEPSDSGLLEE 295

[Close]
BLAST of Cucsa.394520 vs. TrEMBL
Match: A0A0A0KTJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598600 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 4.7e-40
Identity = 101/191 (52.88%), Postives = 119/191 (62.30%), Query Frame = 1 

Query: 1   MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVY 60
           MRYRGVRRRPWGRYAAEIRDP SKERRWLGTFDTAEEAARAYDCAAR+MRGLKARTNFVY
Sbjct: 57  MRYRGVRRRPWGRYAAEIRDPNSKERRWLGTFDTAEEAARAYDCAARAMRGLKARTNFVY 116

Query: 61  PSSPPAPHSLSSDDYLIPRFNFPPKHSLPR--LNSSNWPLFSTPNRGPDFLWSGHAQRIN 120
           PS+P +PHSLS  D L+   NF  +  + R    SSNW  FS  +   D+      Q+IN
Sbjct: 117 PSTPSSPHSLS--DQLLSPLNFAKQSQISRHLATSSNWSTFSNAHTF-DYPEPASHQKIN 176

Query: 121 TASPTLDMLLLRDFLNFPSSNYNHSSKPSYSINTTTNNNSTTKITPPPPPPENYSSEFLP 180
                L+MLL    +  P+   +    P          +S T + P       + SEF+P
Sbjct: 177 PPPSFLNMLLPPHDIQNPNFVSSAPQFPHVDCQYQYPKSSFTSL-PIEKDDFLHDSEFIP 236

Query: 181 KDSPDSGLLEE 190
           K+   SGLLEE
Sbjct: 237 KEPSSSGLLEE 243

[Close]
BLAST of Cucsa.394520 vs. TrEMBL
Match: F6GZ11_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0291g00030 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 8.0e-40
Identity = 111/250 (44.40%), Postives = 136/250 (54.40%), Query Frame = 1 

Query: 1   MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVY 60
           MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAA AYDCAAR+MRG+KARTNFVY
Sbjct: 63  MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGVKARTNFVY 122

Query: 61  PSSPPAPHSLSSDDYLIPRFNF-----PPKHSLP--RLNSSNWPLFSTPNRGPDFLWSGH 120
           P+SPP P    + ++L+P FNF     P    LP    + +NW  FS P          H
Sbjct: 123 PTSPPHP----ATEHLLPSFNFSKQSQPSIRDLPARHFSPTNWSSFSNP----------H 182

Query: 121 AQRINTASP----TLDMLLLRDFLNFPSSN--------------YNHSSKPSY------- 180
           A   + ++P    +L+MLLLRDFLN  S++              Y ++S PS        
Sbjct: 183 AADFSASAPHPSSSLNMLLLRDFLNSSSTSSLSSPHLPFNDHIPYANASSPSLAPSSFSG 242

Query: 181 --SINTTTN---------NNSTTKITPPPPPPENYSS------------------EFLPK 190
             S+N +TN         +N+TT      P P +                     +F P 
Sbjct: 243 CSSVNPSTNATPRAGDATHNNTTAFPGSCPSPSHVEDHLTYGLGGSTGASQGDDMDFFPS 298

[Close]
BLAST of Cucsa.394520 vs. TrEMBL
Match: A5AWM3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006791 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.4e-39
Identity = 111/250 (44.40%), Postives = 135/250 (54.00%), Query Frame = 1 

Query: 1   MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVY 60
           MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAA AYDCAAR+MRG+KARTNFVY
Sbjct: 63  MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGVKARTNFVY 122

Query: 61  PSSPPAPHSLSSDDYLIPRFNF-----PPKHSLP--RLNSSNWPLFSTPNRGPDFLWSGH 120
           P+SPP P    + ++L+P FNF     P    LP    + +NW  FS P          H
Sbjct: 123 PTSPPHP----ATEHLLPSFNFSKQSQPSIRDLPARHFSPTNWSSFSNP----------H 182

Query: 121 AQRINTASP----TLDMLLLRDFLNFPSSN--------------YNHSSKPSY------- 180
           A   + ++P    +L+MLLLRDFLN  S++              Y ++S PS        
Sbjct: 183 AADFSASAPHPSSSLNMLLLRDFLNSSSTSSLSSPHLPFNDHXPYANASSPSLAPSSFSG 242

Query: 181 --SINTTTN---------NNSTTKITPPPPPPENYSS------------------EFLPK 190
             S+N  TN         +N+TT      P P +                     +F P 
Sbjct: 243 CSSVNPXTNATPRAGDATHNNTTAFPGSCPSPSHVEDHLTYGLGGSTGASQGDDMDFFPS 298

[Close]
BLAST of Cucsa.394520 vs. TAIR10
Match: AT1G12980.1 (AT1G12980.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 138.3 bits (347), Expect = 5.0e-33
Identity = 89/191 (46.60%), Postives = 113/191 (59.16%), Query Frame = 1 

Query: 2   RYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVYP 61
           RYRGVRRRPWGRYAAEIRDP SKERRWLGTFDTAE+AA AYD AAR+ RG KARTNF YP
Sbjct: 56  RYRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNFTYP 115

Query: 62  SSPPAPHSLSSDDYLIPRFNFPPKHSLPRLNSSNWPLFSTP--NRGPDFLWSGHAQRI-N 121
           ++   P          PRF+F  K S P   S+  PL S P  +   +F  +  AQRI N
Sbjct: 116 TAVIMPE---------PRFSFSNKKSSP---SARCPLPSLPLDSSTQNFYGAPAAQRIYN 175

Query: 122 TASPTLDMLLLRDFLNFPSSNYNHSSKPSYSINTTTNNNSTTKITPPPPPPENYSSEFLP 181
           T S     + LRD     S +   ++  + S N ++++ S +K           +  F P
Sbjct: 176 TQS-----IFLRD----ASCSSRKTTPYNNSFNGSSSSYSASKTACVSYSENENNESFFP 225

Query: 182 KDSPDSGLLEE 190
           ++S D+GLL+E
Sbjct: 236 EESSDTGLLQE 225

[Close]
BLAST of Cucsa.394520 vs. TAIR10
Match: AT1G24590.1 (AT1G24590.1 DORNROSCHEN-like)

HSP 1 Score: 124.0 bits (310), Expect = 9.7e-29
Identity = 63/84 (75.00%), Postives = 66/84 (78.57%), Query Frame = 1 

Query: 1   MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVY 60
           +RYRGVRRRPWGRYAAEIRDP SKERRWLGTFDTAEEAA AYDCAAR+MRGLKARTNFVY
Sbjct: 56  IRYRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVY 115

Query: 61  PSSPPAPHSLSSDDYLIPRFNFPP 85
           P         S D Y    F+ PP
Sbjct: 116 PMP-------SLDSYHHRIFSSPP 132

[Close]
BLAST of Cucsa.394520 vs. TAIR10
Match: AT5G13910.1 (AT5G13910.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 112.1 bits (279), Expect = 3.8e-25
Identity = 61/97 (62.89%), Postives = 66/97 (68.04%), Query Frame = 1 

Query: 2   RYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVYP 61
           R+ GVRRRPWGRYAAEIRDP +KER WLGTFDTAEEAA AYD AARSMRG +ARTNFVY 
Sbjct: 19  RFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAARSMRGTRARTNFVYS 78

Query: 62  SSPPAPHSLSSDDYLIPRFNFPPKHSLPRLNSSNWPL 99
             PP     SS    I   + PP    P    SN P+
Sbjct: 79  DMPP-----SSSVTSIVSPDDPPPPPPPPAPPSNDPV 110

[Close]
BLAST of Cucsa.394520 vs. TAIR10
Match: AT1G28160.1 (AT1G28160.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-23
Identity = 59/101 (58.42%), Postives = 67/101 (66.34%), Query Frame = 1 

Query: 1   MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVY 60
           ++Y GVRRRPWGRYAAEIR+P +KER WLGTFDTAEEAA AYD AARS+RGL ARTNFVY
Sbjct: 37  IKYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNFVY 96

Query: 61  PSSPPAPHSLS------SDDYLIPRFNFPPKHSLPRLNSSN 96
              P      S      S  ++   FN  P   L   NS+N
Sbjct: 97  SDMPRGSSVTSFVSPDESQRFISELFN--PPSQLEATNSNN 135

[Close]
BLAST of Cucsa.394520 vs. TAIR10
Match: AT1G50640.1 (AT1G50640.1 ethylene responsive element binding factor 3)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-23
Identity = 74/178 (41.57%), Postives = 96/178 (53.93%), Query Frame = 1 

Query: 1   MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVY 60
           +R+RGVR+RPWGR+AAEIRDP  K R WLGTFD+AEEAARAYD AAR++RG KA+TNF  
Sbjct: 26  IRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFPI 85

Query: 61  PSSPPAPHSLSSDDYLIPRFNFPPKHSLPRLNSSNWPLFSTPNRGPDFLWSGHAQRINTA 120
            SS P P +L        RFN      +   N +    F         L++ H Q+    
Sbjct: 86  DSSSPPPPNL--------RFN-----QIRNQNQNQVDPFMDHR-----LFTDHQQQF--- 145

Query: 121 SPTLDMLLLRDFLNFPSSNYNHSSKPSYS-INTTTNNNSTTKITPPPPP--PENYSSE 176
                       +N P+S+   S+  S+S    TT   +TTK  P  PP  PE+  S+
Sbjct: 146 ----------PIVNRPTSSSMSSTVESFSGPRPTTMKPATTKRYPRTPPVVPEDCHSD 172

[Close]
BLAST of Cucsa.394520 vs. NCBI nr
Match: gi|449450620|ref|XP_004143060.1| (PREDICTED: ethylene-responsive transcription factor ESR2-like [Cucumis sativus])

HSP 1 Score: 401.4 bits (1030), Expect = 9.0e-109
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1 

Query: 1   MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVY 60
           MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVY
Sbjct: 73  MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVY 132

Query: 61  PSSPPAPHSLSSDDYLIPRFNFPPKHSLPRLNSSNWPLFSTPNRGPDFLWSGHAQRINTA 120
           PSSPPAPHSLSSDDYLIPRFNFPPKHSLPRLNSSNWPLFSTPNRGPDFLWSGHAQRINTA
Sbjct: 133 PSSPPAPHSLSSDDYLIPRFNFPPKHSLPRLNSSNWPLFSTPNRGPDFLWSGHAQRINTA 192

Query: 121 SPTLDMLLLRDFLNFPSSNYNHSSKPSYSINTTTNNNSTTKITPPPPPPENYSSEFLPKD 180
           SPTLDMLLLRDFLNFPSSNYNHSSKPSYSINTTTNNNSTTKITPPPPPPENYSSEFLPKD
Sbjct: 193 SPTLDMLLLRDFLNFPSSNYNHSSKPSYSINTTTNNNSTTKITPPPPPPENYSSEFLPKD 252

Query: 181 SPDSGLLEE 190
           SPDSGLLEE
Sbjct: 253 SPDSGLLEE 261

[Close]
BLAST of Cucsa.394520 vs. NCBI nr
Match: gi|659087290|ref|XP_008444372.1| (PREDICTED: ethylene-responsive transcription factor ESR1 [Cucumis melo])

HSP 1 Score: 382.9 bits (982), Expect = 3.3e-103
Identity = 185/195 (94.87%), Postives = 187/195 (95.90%), Query Frame = 1 

Query: 1   MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVY 60
           MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVY
Sbjct: 69  MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVY 128

Query: 61  PSSPPAPHSLSSDDYLIPRFNFPPKHSLPRLNSSNWPLFSTPNRGPDFLWSGHAQRINTA 120
           PSSPPAPHSLSSDDYLIPRFNFPPKHSLPRLNSSNWP+FSTPNRGPDFLWSGHAQRINTA
Sbjct: 129 PSSPPAPHSLSSDDYLIPRFNFPPKHSLPRLNSSNWPIFSTPNRGPDFLWSGHAQRINTA 188

Query: 121 SPTLDMLLLRDFLNFPSSNYNHSSKPSYSINTTT------NNNSTTKITPPPPPPENYSS 180
           SPTLDMLLLRDFLNFPSSNYNHSSKPSY INTTT      NN+STTKIT PPPPPENYSS
Sbjct: 189 SPTLDMLLLRDFLNFPSSNYNHSSKPSYPINTTTTTTTNNNNSSTTKIT-PPPPPENYSS 248

Query: 181 EFLPKDSPDSGLLEE 190
           EFLPKDSPDSGLLEE
Sbjct: 249 EFLPKDSPDSGLLEE 262

[Close]
BLAST of Cucsa.394520 vs. NCBI nr
Match: gi|703113518|ref|XP_010100407.1| (Ethylene-responsive transcription factor [Morus notabilis])

HSP 1 Score: 175.6 bits (444), Expect = 8.0e-41
Identity = 115/229 (50.22%), Postives = 135/229 (58.95%), Query Frame = 1 

Query: 1   MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVY 60
           MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAA AYDCAAR+MRG+KARTNFVY
Sbjct: 74  MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGIKARTNFVY 133

Query: 61  PSSPPAPHSLSSDDYL--IPRFNFPPKHSLPRLNSSNWPLFSTPNRGPDFLWS--GHAQR 120
           P+SPP P ++   D+L  +P F F  K S P + S      S+ +  P   WS   H+  
Sbjct: 134 PASPP-PSAVVIADHLTTLPPFAF-TKQSQPSIKSFT---TSSTSVNPSANWSRFSHSTS 193

Query: 121 INTASPTLDMLLLRDFLNFPSSNYNHSSKPSY----------------------SINTTT 180
            +   P  +MLLLRDF+  PSSN N +  PS+                      SI+TTT
Sbjct: 194 NDHRLPQRNMLLLRDFI-APSSNPNPNPNPSFFSPQTLYSADYNQFSHNTNGSSSISTTT 253

Query: 181 N--------------NNSTTKITPPPPPPENYSSEFLPKDSPDSGLLEE 190
           +              N  TT IT   P  E+  SEF PK+  DSGLLEE
Sbjct: 254 SSSISTTNLQNLDQVNTKTTVITTAQPDDED-CSEFFPKEPSDSGLLEE 295

[Close]
BLAST of Cucsa.394520 vs. NCBI nr
Match: gi|659090714|ref|XP_008446161.1| (PREDICTED: ethylene-responsive transcription factor ESR2-like [Cucumis melo])

HSP 1 Score: 173.7 bits (439), Expect = 3.0e-40
Identity = 104/195 (53.33%), Postives = 124/195 (63.59%), Query Frame = 1 

Query: 1   MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVY 60
           MRYRGVRRRPWGRYAAEIRDP SKERRWLGTFDTAEEAARAYDCAAR+MRGLKARTNFVY
Sbjct: 57  MRYRGVRRRPWGRYAAEIRDPNSKERRWLGTFDTAEEAARAYDCAARAMRGLKARTNFVY 116

Query: 61  PSSPPAPHSLSSDDYLIPRFNFPPKHSLPR--LNSSNWPLFSTPNRGPDFLWSGHA--QR 120
           PS+P +PHSLS  D L+   NF  +  + R    SSNW  FS  +    F +  HA  Q+
Sbjct: 117 PSTPSSPHSLS--DQLLSPLNFAKQSQISRHLATSSNWSAFSNAH---TFDYPEHASHQK 176

Query: 121 INTASPTLDMLLLRDFLNFPSSNYNHSSKPSYSINTTTNNNSTTKITPPPPPPENY--SS 180
           IN     L+MLL    +  P+     SS P ++          +  T  P   +++   S
Sbjct: 177 INPPPSFLNMLLPPHDIQNPNF---VSSAPQFTHVDCQYQCPKSSFTSLPIEKDDFLPDS 236

Query: 181 EFLPKDSPDSGLLEE 190
           EF+PK+   SGLLEE
Sbjct: 237 EFIPKEPSSSGLLEE 243

[Close]
BLAST of Cucsa.394520 vs. NCBI nr
Match: gi|778708644|ref|XP_011656252.1| (PREDICTED: ethylene-responsive transcription factor ESR2-like [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 6.8e-40
Identity = 101/191 (52.88%), Postives = 119/191 (62.30%), Query Frame = 1 

Query: 1   MRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARSMRGLKARTNFVY 60
           MRYRGVRRRPWGRYAAEIRDP SKERRWLGTFDTAEEAARAYDCAAR+MRGLKARTNFVY
Sbjct: 57  MRYRGVRRRPWGRYAAEIRDPNSKERRWLGTFDTAEEAARAYDCAARAMRGLKARTNFVY 116

Query: 61  PSSPPAPHSLSSDDYLIPRFNFPPKHSLPR--LNSSNWPLFSTPNRGPDFLWSGHAQRIN 120
           PS+P +PHSLS  D L+   NF  +  + R    SSNW  FS  +   D+      Q+IN
Sbjct: 117 PSTPSSPHSLS--DQLLSPLNFAKQSQISRHLATSSNWSTFSNAHTF-DYPEPASHQKIN 176

Query: 121 TASPTLDMLLLRDFLNFPSSNYNHSSKPSYSINTTTNNNSTTKITPPPPPPENYSSEFLP 180
                L+MLL    +  P+   +    P          +S T + P       + SEF+P
Sbjct: 177 PPPSFLNMLLPPHDIQNPNFVSSAPQFPHVDCQYQYPKSSFTSL-PIEKDDFLHDSEFIP 236

Query: 181 KDSPDSGLLEE 190
           K+   SGLLEE
Sbjct: 237 KEPSSSGLLEE 243

The following BLAST results are available for this feature:
BLAST of Cucsa.394520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ESR1_ARATH8.9e-3246.60Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE... [more]
ESR2_ARATH1.7e-2775.00Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE... [more]
LEP_ARATH6.8e-2462.89Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2... [more]
ERF87_ARATH2.2e-2258.42Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF08... [more]
ERF82_ARATH2.2e-2241.57Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 ... [more]
BLAST of Cucsa.394520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMT0_CUCSA6.2e-109100.00AP2/ERF domain-containing transcription factor OS=Cucumis sativus GN=Csa_2G34909... [more]
W9RN47_9ROSA5.6e-4150.22Ethylene-responsive transcription factor OS=Morus notabilis GN=L484_027718 PE=4 ... [more]
A0A0A0KTJ2_CUCSA4.7e-4052.88Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598600 PE=4 SV=1[more]
F6GZ11_VITVI8.0e-4044.40Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0291g00030 PE=4 SV=... [more]
A5AWM3_VITVI1.4e-3944.40Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006791 PE=4 SV=1[more]
BLAST of Cucsa.394520 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G12980.15.0e-3346.60 Integrase-type DNA-binding superfamily protein[more]
AT1G24590.19.7e-2975.00 DORNROSCHEN-like[more]
AT5G13910.13.8e-2562.89 Integrase-type DNA-binding superfamily protein[more]
AT1G28160.11.2e-2358.42 Integrase-type DNA-binding superfamily protein[more]
AT1G50640.11.2e-2341.57 ethylene responsive element binding factor 3[more]
BLAST of Cucsa.394520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449450620|ref|XP_004143060.1|9.0e-109100.00PREDICTED: ethylene-responsive transcription factor ESR2-like [Cucumis sativus][more]
gi|659087290|ref|XP_008444372.1|3.3e-10394.87PREDICTED: ethylene-responsive transcription factor ESR1 [Cucumis melo][more]
gi|703113518|ref|XP_010100407.1|8.0e-4150.22Ethylene-responsive transcription factor [Morus notabilis][more]
gi|659090714|ref|XP_008446161.1|3.0e-4053.33PREDICTED: ethylene-responsive transcription factor ESR2-like [Cucumis melo][more]
gi|778708644|ref|XP_011656252.1|6.8e-4052.88PREDICTED: ethylene-responsive transcription factor ESR2-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001471AP2/ERF_dom
IPR016177DNA-bd_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.394520.1Cucsa.394520.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 3..14
score: 1.5E-10coord: 25..41
score: 1.5
IPR001471AP2/ERF domainGENE3DG3DSA:3.30.730.10coord: 2..58
score: 2.1
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 2..51
score: 4.4
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 2..65
score: 1.0
IPR001471AP2/ERF domainPROFILEPS51032AP2_ERFcoord: 2..59
score: 2
IPR016177DNA-binding domainunknownSSF54171DNA-binding domaincoord: 2..59
score: 5.69
NoneNo IPR availablePANTHERPTHR31677FAMILY NOT NAMEDcoord: 1..95
score: 1.5
NoneNo IPR availablePANTHERPTHR31677:SF9SUBFAMILY NOT NAMEDcoord: 1..95
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.394520Cla010041Watermelon (97103) v1cgywmB708
Cucsa.394520Cla022742Watermelon (97103) v1cgywmB706
Cucsa.394520Csa5G598600Cucumber (Chinese Long) v2cgycuB551
Cucsa.394520Csa2G349090Cucumber (Chinese Long) v2cgycuB549
Cucsa.394520MELO3C010692Melon (DHL92) v3.5.1cgymeB646
Cucsa.394520MELO3C011947Melon (DHL92) v3.5.1cgymeB643
Cucsa.394520ClCG05G025780Watermelon (Charleston Gray)cgywcgB671
Cucsa.394520ClCG08G017680Watermelon (Charleston Gray)cgywcgB674
Cucsa.394520CSPI02G17340Wild cucumber (PI 183967)cgycpiB578
Cucsa.394520CSPI05G22230Wild cucumber (PI 183967)cgycpiB580
Cucsa.394520CmaCh12G000340Cucurbita maxima (Rimu)cgycmaB1087
Cucsa.394520CmaCh18G007640Cucurbita maxima (Rimu)cgycmaB1090
Cucsa.394520CmaCh04G017700Cucurbita maxima (Rimu)cgycmaB1093
Cucsa.394520CmaCh05G000440Cucurbita maxima (Rimu)cgycmaB1094
Cucsa.394520CmoCh05G000510Cucurbita moschata (Rifu)cgycmoB1093
Cucsa.394520CmoCh04G018620Cucurbita moschata (Rifu)cgycmoB1092
Cucsa.394520Lsi04G005950Bottle gourd (USVL1VR-Ls)cgylsiB636
Cucsa.394520Lsi08G016440Bottle gourd (USVL1VR-Ls)cgylsiB637
Cucsa.394520Cp4.1LG11g00790Cucurbita pepo (Zucchini)cgycpeB1039
Cucsa.394520MELO3C010692.2Melon (DHL92) v3.6.1cgymedB641
Cucsa.394520MELO3C011947.2Melon (DHL92) v3.6.1cgymedB637
Cucsa.394520CsaV3_5G031070Cucumber (Chinese Long) v3cgycucB598
Cucsa.394520CsaV3_2G024950Cucumber (Chinese Long) v3cgycucB596
Cucsa.394520Cla97C05G108020Watermelon (97103) v2cgywmbB673
Cucsa.394520Cla97C08G161400Watermelon (97103) v2cgywmbB676
Cucsa.394520Bhi07G001435Wax gourdcgywgoB787
Cucsa.394520Bhi04G000574Wax gourdcgywgoB782
Cucsa.394520Carg20492Silver-seed gourdcarcgyB0700
Cucsa.394520Carg21834Silver-seed gourdcarcgyB0576
Cucsa.394520Carg14310Silver-seed gourdcarcgyB0289
Cucsa.394520Carg14499Silver-seed gourdcarcgyB0817
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cucsa.394520Cucsa.286530Cucumber (Gy14) v1cgycgyB139
The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.394520Cucurbita moschata (Rifu)cgycmoB1085
Cucsa.394520Cucurbita moschata (Rifu)cgycmoB1088
Cucsa.394520Cucurbita pepo (Zucchini)cgycpeB1037
Cucsa.394520Cucurbita pepo (Zucchini)cgycpeB1041
Cucsa.394520Cucurbita pepo (Zucchini)cgycpeB1045
Cucsa.394520Melon (DHL92) v3.6.1cgymedB638
Cucsa.394520Cucumber (Chinese Long) v3cgycucB595