Cucsa.394310 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAAAGAAATACCAAAGGGGTCAAACCCTGGTTGGGATCGAGGCACGTAGGGTTGTGCAGAAAGCAGAAAGCGAAGATGATCATCCCAGTGCGTTGCTTCACTTGCGGGAAGGTAAGCTATGGACAACCATATTCAACATTGAGTTAAAGTTTCTTCTCAGAATTCCATTTTCCTGTTTTCTCTATCCTTCTATGTCCCACTGTCTTTGGGTTCTTGCCTACCCACCACCCCCAAAGTTTTCAATTACTCTCAACTCAACTCACCTCTTAGAACCCTTCGGTTTATATTTTTTTTtAGGTGATTGGAAACAAGTGGGATCATTACCTTGATATTCTACAGGCCGATTATTCAGAAGGGCAAGTGAGTGCAACACGTCACTTCATTTACATTTTGATTTCCGTCTTGGTTTCTTACAACATCCAAAAGCATACCTGTTTTACCTTGCCTTTTAGAAGAGATCCTAATGCATTTACTTTTCCCGTATTAGGGATGCACTTGATGCACTGGGTCTGGTTCGCTACTGCTGTAGACGAATGCTCATGACTCATGTTGACCTTATGAAAAGCTTCTTAATTACAATAGTAATCCCTTTTCGCTTTCCTTCTCTTCCTTCATGCACGAGCTGTTTGCCTACTTCAGTTTTTCGCTGCCCTTTCACACATTTATCGCTTTCTGTTTCAGCTCTGGATAAGTCTGATACCAGTTAG ATGGAAAAGAAATACCAAAGGGGTCAAACCCTGGTTGGGATCGAGGCACGTAGGGTTGTGCAGAAAGCAGAAAGCGAAGATGATCATCCCAGTGCGTTGCTTCACTTGCGGGAAGGCCGATTATTCAGAAGGGCAAGTGAGTGCAACACGTCACTTCATTTACATTTTGATTTCCGTCTTGGTTTCTTACAACATCCAAAAGCATACCTGGATGCACTTGATGCACTGGGTCTGGTTCGCTACTGCTGTAGACGAATGCTCATGACTCATGTTGACCTTATGAAAAGCTTCTTAATTACAATAGTAATCCCTTTTCGCTTTCCTTCTCTTCCTTCATGCACGAGCTGTTTGCCTACTTCAGTTTTTCGCTGCCCTTTCACACATTTATCGCTTTCTGTTTCAGCTCTGGATAAGTCTGATACCAGTTAG ATGGAAAAGAAATACCAAAGGGGTCAAACCCTGGTTGGGATCGAGGCACGTAGGGTTGTGCAGAAAGCAGAAAGCGAAGATGATCATCCCAGTGCGTTGCTTCACTTGCGGGAAGGCCGATTATTCAGAAGGGCAAGTGAGTGCAACACGTCACTTCATTTACATTTTGATTTCCGTCTTGGTTTCTTACAACATCCAAAAGCATACCTGGATGCACTTGATGCACTGGGTCTGGTTCGCTACTGCTGTAGACGAATGCTCATGACTCATGTTGACCTTATGAAAAGCTTCTTAATTACAATAGTAATCCCTTTTCGCTTTCCTTCTCTTCCTTCATGCACGAGCTGTTTGCCTACTTCAGTTTTTCGCTGCCCTTTCACACATTTATCGCTTTCTGTTTCAGCTCTGGATAAGTCTGATACCAGTTAG MEKKYQRGQTLVGIEARRVVQKAESEDDHPSALLHLREGRLFRRASECNTSLHLHFDFRLGFLQHPKAYLDALDALGLVRYCCRRMLMTHVDLMKSFLITIVIPFRFPSLPSCTSCLPTSVFRCPFTHLSLSVSALDKSDTS*
BLAST of Cucsa.394310 vs. Swiss-Prot
Match: RPBAL_ARATH (DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana GN=NRPB10L PE=1 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 6.7e-08 Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 1
BLAST of Cucsa.394310 vs. Swiss-Prot
Match: RPAB5_CAEBR (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Caenorhabditis briggsae GN=rpb-10 PE=3 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 5.7e-07 Identity = 28/55 (50.91%), Postives = 35/55 (63.64%), Query Frame = 1
BLAST of Cucsa.394310 vs. Swiss-Prot
Match: RPAB5_CAEEL (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Caenorhabditis elegans GN=rpb-10 PE=3 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 5.7e-07 Identity = 28/55 (50.91%), Postives = 35/55 (63.64%), Query Frame = 1
BLAST of Cucsa.394310 vs. Swiss-Prot
Match: RPAB5_BRANA (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus PE=3 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 9.7e-07 Identity = 29/55 (52.73%), Postives = 33/55 (60.00%), Query Frame = 1
BLAST of Cucsa.394310 vs. Swiss-Prot
Match: NRPBA_ARATH (DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana GN=NRPB10 PE=1 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 2.2e-06 Identity = 29/55 (52.73%), Postives = 33/55 (60.00%), Query Frame = 1
BLAST of Cucsa.394310 vs. TrEMBL
Match: G7K088_MEDTR (DNA-directed RNA polymerase II 8.2 kDa protein OS=Medicago truncatula GN=MTR_5g034050 PE=2 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 3.4e-06 Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 1
BLAST of Cucsa.394310 vs. TrEMBL
Match: A0A072UMH9_MEDTR (DNA-directed RNA polymerase II 8.2 kDa protein OS=Medicago truncatula GN=MTR_4g075600 PE=3 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 3.4e-06 Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 1
BLAST of Cucsa.394310 vs. TrEMBL
Match: I3SU78_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 3.4e-06 Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 1
BLAST of Cucsa.394310 vs. TrEMBL
Match: D7KVG8_ARALL (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_675207 PE=3 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 7.5e-06 Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 1
BLAST of Cucsa.394310 vs. TrEMBL
Match: B9T3C0_RICCO (DNA-directed RNA polymerase II, subunit n, putative OS=Ricinus communis GN=RCOM_1750030 PE=3 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 7.5e-06 Identity = 32/62 (51.61%), Postives = 37/62 (59.68%), Query Frame = 1
BLAST of Cucsa.394310 vs. TAIR10
Match: AT1G61700.1 (AT1G61700.1 RNA polymerases N / 8 kDa subunit) HSP 1 Score: 58.5 bits (140), Expect = 3.8e-09 Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 1
BLAST of Cucsa.394310 vs. TAIR10
Match: AT1G11475.1 (AT1G11475.1 RNA polymerases N / 8 kDa subunit) HSP 1 Score: 53.5 bits (127), Expect = 1.2e-07 Identity = 29/55 (52.73%), Postives = 33/55 (60.00%), Query Frame = 1
BLAST of Cucsa.394310 vs. NCBI nr
Match: gi|922368811|ref|XP_013456570.1| (DNA-directed RNA polymerase II 8.2 kDa protein [Medicago truncatula]) HSP 1 Score: 59.7 bits (143), Expect = 4.8e-06 Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 1
BLAST of Cucsa.394310 vs. NCBI nr
Match: gi|388511517|gb|AFK43820.1| (unknown [Medicago truncatula]) HSP 1 Score: 59.7 bits (143), Expect = 4.8e-06 Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 1
BLAST of Cucsa.394310 vs. NCBI nr
Match: gi|502092916|ref|XP_004489826.1| (PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cicer arietinum]) HSP 1 Score: 59.7 bits (143), Expect = 4.8e-06 Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 1
BLAST of Cucsa.394310 vs. NCBI nr
Match: gi|357485847|ref|XP_003613211.1| (DNA-directed RNA polymerase II 8.2 kDa protein [Medicago truncatula]) HSP 1 Score: 59.7 bits (143), Expect = 4.8e-06 Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 1
BLAST of Cucsa.394310 vs. NCBI nr
Match: gi|672116849|ref|XP_008781595.1| (PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Phoenix dactylifera]) HSP 1 Score: 58.9 bits (141), Expect = 8.2e-06 Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |