Cucsa.394060 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.394060
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionHippocampus abundant transcript 1 protein
Locationscaffold04100 : 138418 .. 139850 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAATGTGAGCTTTCGTCCGAGTGTTGTTACTAAGGTTCGACGCCATGACCATCTCTGCAATTACAGGCCGACAATGTACCGGAGCACCGGCGAGCTTCTGCATTCGGAATTTTATCTGCCACTATCGCTTCTGCTTCCGTCTGCGGGAATCTCTGTGCTCGTTTTCTCTCCATTTCATCCACGTTTCAGGTAATCTCCGCTTCCCTTTCTCTGAAATTGCATTTCTACTCAGTTTTCAACGTATTGTCTTTCTCAATAGGCAGCGGCTTCCACGGCGGCTATGGCGGCTGTGTATATGAGGGTTTTCCTTACTGATTCTGCCCCTAATTGCAATCTTTCTGCTCCCTTACTATCTGGGGAGAACGTAGAATCTGTTTCATCTAAAAAGGAAAAaTATGCTACAGCCTTGCCTTCACTGACGGACCTTTTTTCCTTTTTGAAGACTAGGTATGAGTTCATTTTGGGCCTCCAAATGCAAACTCTTCACTTCAATTATTTTATCTGCATCTATATTTGTAAATACCGTTGGAACATTACACGTTTTTATAGTCTAATTAGCATATTTTAACTACTACCTCATCATTTAATTGGTGAATTTTGGCCATCAAGATTTATTTTTAAAAACTAAATAGCTATGAGACGGGAATCAACTATAAACTAAGTTTAAATCCTAGAAATCAGTAATGCGTTTTGCCCCAGTTTTATTTTTTCTATCTGTCATCAGTTTTTGCAATTTTCCTTCTTGTCATCCCATTTTTtGGTGCCTTGTCGGCGGTTCATTGAATAAGAGCAGGATCCAATAATGATTTTATGTAGTACTTGAACCAATGATGAATAAGAATGTATTAGAAGTTTAAGTCACTCACTATCACTTTTGAGTTATCTCATAGTCATGGAGTTTGGACCAAATAGTTTAGTGGCTCTAAGAGAAGATTTTGATCAGTTTCTTCTTAAATTCTCAATCCTTTTTCTTTTGTACATTATTTCCAGCTCGACATTTTCACAAGTAGCCGTCGTTGCATTTTTTAGCAATCTTGCTGATGTTGGCCATCATGCTTCAATAATGGTTAGTCTTTTGATCCAGGGATCTAATCTGGGTCAGCTTTTGTCAACTTTTAGTTATAATTTCATTCAACTTATTCGGTTTACTTTTAAATAGAAAGTTTTATTCCTTAGTGATCACCCTCATCTTAGTCAGTTTGTAAATCTTTGTCTGGCACAATTATATATTTTACATCCATAACAGGCTCTCAACTGTGCGTAATGAACTTTAGTTGAGTAACTAGCTTGTCTTGGACAATTGATATGCTGACCGATGTTTGATTTCCCAACTACAGTACTATTTAAAAGCGAAATTTCACTTTGACAAGGATAGAATTGCTGATTTGATGGTGATTTCTGGGGTTGCTTCAAGTATTTCTCAGGCAT

mRNA sequence

ATGGCCGACAATGTACCGGAGCACCGGCGAGCTTCTGCATTCGGAATTTTATCTGCCACTATCGCTTCTGCTTCCGTCTGCGGGAATCTCTGTGCTCGTTTTCTCTCCATTTCATCCACGTTTCAGTTTCTTCTTAAATTCTCAATCCTTTTTCTTTTGTACATTATTTCCAGCTCGACATTTTCACAAGTAGCCGTCGTTGCATTTTTTAGCAATCTTGCTGATGTTGGCCATCATGCTTCAATAATGTACTATTTAAAAGCGAAATTTCACTTTGACAAGGATAGAATTGCTGATTTGATGGTGATTTCTGGGGTTGCTTCAAGTATTTCTCAGGCAT

Coding sequence (CDS)

ATGGCCGACAATGTACCGGAGCACCGGCGAGCTTCTGCATTCGGAATTTTATCTGCCACTATCGCTTCTGCTTCCGTCTGCGGGAATCTCTGTGCTCGTTTTCTCTCCATTTCATCCACGTTTCAGTTTCTTCTTAAATTCTCAATCCTTTTTCTTTTGTACATTATTTCCAGCTCGACATTTTCACAAGTAGCCGTCGTTGCATTTTTTAGCAATCTTGCTGATGTTGGCCATCATGCTTCAATAATGTACTATTTAAAAGCGAAATTTCACTTTGACAAGGATAGAATTGCTGATTTGATGGTGATTTCTGGGGTTGCTTCAAGTATTTCTCAGGCAT

Protein sequence

MADNVPEHRRASAFGILSATIASASVCGNLCARFLSISSTFQFLLKFSILFLLYIISSSTFSQVAVVAFFSNLADVGHHASIMYYLKAKFHFDKDRIADLMVISGVASSISQAX
Homology
[Close]
BLAST of Cucsa.394060 vs. TrEMBL
Match: A0A022PTI8_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a006533mg PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.5e-20
Identity = 65/161 (40.37%), Postives = 88/161 (54.66%), Query Frame = 1 

Query: 1   MADNVPEHRRASAFGILSATIASASVCGNLCARFLSISSTFQFLLKFSILFLLY------ 60
           +ADNVPE +RA+ FGI+S   +S+ V GN   RFLS S+TFQ     S++ L Y      
Sbjct: 130 VADNVPEGKRAAVFGIMSGFSSSSFVFGNFSTRFLSTSATFQVAAAMSVIALFYMRVFLP 189

Query: 61  --IISSS-----------------------------------------TFSQVAVVAFFS 113
             ++S++                                         TFS+ AVVAFF 
Sbjct: 190 ESMMSNTNCTKSTEETVCLLEKAPSKKWNLFDTLPSMDDTICLLKTSPTFSKAAVVAFFI 249

[Close]
BLAST of Cucsa.394060 vs. TrEMBL
Match: M1ALP1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009886 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.6e-19
Identity = 69/161 (42.86%), Postives = 88/161 (54.66%), Query Frame = 1 

Query: 1   MADNVPEHRRASAFGILSATIASASVCGNLCARFLSI----------------------- 60
           +ADNVPE RRAS FG+LS   +SA VCGNL ARFLS                        
Sbjct: 130 VADNVPESRRASVFGVLSGIASSAFVCGNLSARFLSTASTFQVAAAMAVIALVYMKMFLP 189

Query: 61  ------------SST-----------FQF---LLKFSILFLLYIISSSTFSQVAVVAFFS 113
                       S T           FQF   L  FS +  L + +SSTF Q A+V+FF 
Sbjct: 190 ESITKGNICSKKSETSCLLEKAPKKGFQFFKALPSFSDMLCL-LKTSSTFLQAAIVSFFV 249

[Close]
BLAST of Cucsa.394060 vs. TrEMBL
Match: K4BVS8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 68/161 (42.24%), Postives = 87/161 (54.04%), Query Frame = 1 

Query: 1   MADNVPEHRRASAFGILSATIASASVCGNLCARFLS------------------------ 60
           +ADNVPE RRAS FG+LS   +SA VCGNL ARFLS                        
Sbjct: 130 VADNVPESRRASVFGVLSGIASSAFVCGNLSARFLSTASTFQVAAAMAVIALVYMKMFLP 189

Query: 61  -----------ISST-----------FQF---LLKFSILFLLYIISSSTFSQVAVVAFFS 113
                      IS T           FQF   L  FS +  L + +SSTF   A+V FF+
Sbjct: 190 ESITNGNICSKISETSCLLEKAPKKGFQFFKTLPSFSDMLCL-LKTSSTFLHAAIVTFFA 249

[Close]
BLAST of Cucsa.394060 vs. TrEMBL
Match: M5XB70_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005755mg PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.9e-16
Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = 1 

Query: 57  SSSTFSQVAVVAFFSNLADVGHHASIMYYLKAKFHFDKDRIADLMVISGVASSISQ 113
           +S+TFSQ A+VAFFSNLADVG HAS+MYYLKA+FHF+KD+ ADLMVISGVA +ISQ
Sbjct: 241 TSATFSQAAIVAFFSNLADVGLHASMMYYLKARFHFNKDQFADLMVISGVAGTISQ 296

[Close]
BLAST of Cucsa.394060 vs. TrEMBL
Match: M5XB70_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005755mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.0e-06
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 1 

Query: 1   MADNVPEHRRASAFGILSATIASASVCGNLCARFLSISSTFQFLLKFSILFLLYI 56
           +ADNV E RRAS FG+LS   +SA VCG L  RFLS SSTFQ     +++  +Y+
Sbjct: 132 VADNVAEERRASTFGVLSGIGSSAFVCGTLFTRFLSTSSTFQVATSVAVVSAMYL 186


HSP 2 Score: 89.4 bits (220), Expect = 3.2e-15
Identity = 43/61 (70.49%), Postives = 53/61 (86.89%), Query Frame = 1 

Query: 52  LLYIISSSTFSQVAVVAFFSNLADVGHHASIMYYLKAKFHFDKDRIADLMVISGVASSIS 111
           L  + SS TFSQ A+V+FFSNLADVG HAS++YYLKA+FHF+KD+ ADLMVI+GVA +IS
Sbjct: 234 LALLKSSLTFSQAAIVSFFSNLADVGLHASLLYYLKARFHFNKDQFADLMVITGVAGTIS 293

Query: 112 Q 113
           Q
Sbjct: 294 Q 294

[Close]
BLAST of Cucsa.394060 vs. TAIR10
Match: AT5G42210.1 (AT5G42210.1 Major facilitator superfamily protein)

HSP 1 Score: 75.5 bits (184), Expect = 2.4e-14
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1 

Query: 57  SSSTFSQVAVVAFFSNLADVGHHASIMYYLKAKFHFDKDRIADLMVISGVASSISQ 113
           SS    QVA+V+FFS+LA+ G HAS MYYLKAKFHF+KD+ ADLM+I G + SISQ
Sbjct: 85  SSVPLFQVAMVSFFSSLAEAGLHASSMYYLKAKFHFNKDQFADLMIIVGASGSISQ 140

[Close]
BLAST of Cucsa.394060 vs. TAIR10
Match: AT2G16990.1 (AT2G16990.1 Major facilitator superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 2.6e-08
Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 1 

Query: 57  SSSTFSQVAVVAFFSNLADVGHHASIMYYLKAKFHFDKDRIADLMVISGVASSISQ 113
           +S+ F Q  VV FFS+ +D G  ++ +Y+LKA+F FDK + ADL+++  +  SISQ
Sbjct: 251 TSTIFFQALVVTFFSSFSDSGMESAFLYFLKARFGFDKKQFADLLLLITIVGSISQ 306

[Close]
BLAST of Cucsa.394060 vs. TAIR10
Match: AT2G16980.2 (AT2G16980.2 Major facilitator superfamily protein)

HSP 1 Score: 47.4 bits (111), Expect = 7.0e-06
Identity = 22/58 (37.93%), Postives = 38/58 (65.52%), Query Frame = 1 

Query: 55  IISSSTFSQVAVVAFFSNLADVGHHASIMYYLKAKFHFDKDRIADLMVISGVASSISQ 113
           I +S+   Q  VV FF+  ++ G  +++MY+LKA+F F+K+  A+L ++  +  SISQ
Sbjct: 253 INNSTILIQALVVTFFATFSESGRGSALMYFLKARFGFNKNDFAELFLLVTIIGSISQ 310


HSP 2 Score: 44.3 bits (103), Expect = 5.9e-05
Identity = 24/55 (43.64%), Postives = 34/55 (61.82%), Query Frame = 1 

Query: 1   MADNVPEHRRASAFGILSATIASASVCGNLCARFLSISSTFQFLLKFSILFLLYI 56
           +A NV   +R S FGIL+   + + VC +L ARFLSI+STFQ       + L+Y+
Sbjct: 133 VAKNVHGTKRISMFGILAGVSSISGVCASLSARFLSIASTFQVAAISLFIGLVYM 187

[Close]
BLAST of Cucsa.394060 vs. NCBI nr
Match: gi|659089077|ref|XP_008445315.1| (PREDICTED: hippocampus abundant transcript-like protein 1 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 2.8e-33
Identity = 90/158 (56.96%), Postives = 95/158 (60.13%), Query Frame = 1 

Query: 2   ADNVPEHRRASAFGILSATIASASVCGNLCARFLSIS----------------------- 61
           ADNVPEHRRASAFGILSA I+SASVCGNLCARFLSIS                       
Sbjct: 131 ADNVPEHRRASAFGILSAIISSASVCGNLCARFLSISSTFQAAASTAAMAALYMRVFLTD 190

Query: 62  ------------------------STFQFLLKFSILFLLYIISSSTFSQVAVVAFFSNLA 113
                                     +   L        ++ +SSTFSQ AVVAFFSNLA
Sbjct: 191 SASNCNLSAPLLSGENVESVSSKKEKYASALPSLTDLFSFLKTSSTFSQAAVVAFFSNLA 250

[Close]
BLAST of Cucsa.394060 vs. NCBI nr
Match: gi|778670405|ref|XP_011649469.1| (PREDICTED: uncharacterized protein LOC105434628 isoform X2 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 9.1e-32
Identity = 91/159 (57.23%), Postives = 97/159 (61.01%), Query Frame = 1 

Query: 1   MADNVPEHRRASAFGILSATIASASVCGNLC----------------------------- 60
           MADNVPEHRRASAFGILSATIASASVCGNLC                             
Sbjct: 1   MADNVPEHRRASAFGILSATIASASVCGNLCARFLSISSTFQAAASTAAMAAVYMRVFLT 60

Query: 61  ---------ARFLS---ISSTFQFLLKFSILF------LLYIISSSTFSQVAVVAFFSNL 113
                    A  LS   + S      K++           ++ +SSTFSQVAVVAFFSNL
Sbjct: 61  DSAPNCNLSAPLLSGENVESVSSKKEKYATALPSLTDLFSFLKTSSTFSQVAVVAFFSNL 120

[Close]
BLAST of Cucsa.394060 vs. NCBI nr
Match: gi|659089075|ref|XP_008445314.1| (PREDICTED: hippocampus abundant transcript-like protein 1 [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-24
Identity = 78/164 (47.56%), Postives = 88/164 (53.66%), Query Frame = 1 

Query: 2   ADNVPEHRRASAFGILSATIASASVCGNLCARFLSISST--------------------- 61
           ADNVPEHRRASAFG+LSA  +SA VCG LCARFLSI ST                     
Sbjct: 132 ADNVPEHRRASAFGLLSAVGSSAFVCGTLCARFLSIPSTFQVAALTAAVAAVYMRIFLTD 191

Query: 62  --------------------------------FQFLLKFSILFLLYIISSSTFSQVAVVA 113
                                              L     LF L + +S TFS  A+VA
Sbjct: 192 SVAECNLSAPLLSGENVESVSSDPVSLKKEQIITTLPSVKDLFAL-LKTSLTFSLAAIVA 251

[Close]
BLAST of Cucsa.394060 vs. NCBI nr
Match: gi|449450482|ref|XP_004142991.1| (PREDICTED: hippocampus abundant transcript 1 protein-like [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 2.4e-24
Identity = 76/164 (46.34%), Postives = 88/164 (53.66%), Query Frame = 1 

Query: 2   ADNVPEHRRASAFGILSATIASASVCGNLCARFLSI------------------------ 61
           ADNVPEH+RASAFGILSATI++A VCG LC RFLSI                        
Sbjct: 131 ADNVPEHQRASAFGILSATISAAFVCGTLCTRFLSIPSTFQVAASTAVVAAVYMRIFLTD 190

Query: 62  -----------------------------SSTFQFLLKFSILFLLYIISSSTFSQVAVVA 113
                                              L     LF L +++SSTFSQ A+VA
Sbjct: 191 SVANCNLSAPLLSGENADSVSSDPISPKKEHIITTLPSVKDLFSL-LMTSSTFSQAAIVA 250

[Close]
BLAST of Cucsa.394060 vs. NCBI nr
Match: gi|659089072|ref|XP_008445313.1| (PREDICTED: hippocampus abundant transcript 1 protein-like [Cucumis melo])

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-23
Identity = 75/164 (45.73%), Postives = 87/164 (53.05%), Query Frame = 1 

Query: 2   ADNVPEHRRASAFGILSATIASASVCGNLCARFLSISS---------------------- 61
           ADNVPEH+RASAFGILSA I++A VCG LC RFLSI S                      
Sbjct: 131 ADNVPEHQRASAFGILSAIISAAFVCGTLCTRFLSIPSTFQFAASTAVVAAVYMRIFLTD 190

Query: 62  -------------------------------TFQFLLKFSILFLLYIISSSTFSQVAVVA 113
                                              L     LF L +++SSTFSQ A+VA
Sbjct: 191 SVADCNLSAPLLSGEKVESVSSEPVSPKKEHIITTLPSVKDLFSL-LMTSSTFSQAAIVA 250

The following BLAST results are available for this feature:
BLAST of Cucsa.394060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A022PTI8_ERYGU2.5e-2040.37Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a006533mg PE=4 SV=1[more]
M1ALP1_SOLTU3.6e-1942.86Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009886 PE=4 SV=1[more]
K4BVS8_SOLLC1.1e-1842.24Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
M5XB70_PRUPE4.9e-1678.57Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005755mg PE=4 SV=1[more]
M5XB70_PRUPE6.0e-0652.73Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005755mg PE=4 SV=1[more]
BLAST of Cucsa.394060 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G42210.12.4e-1466.07 Major facilitator superfamily protein[more]
AT2G16990.12.6e-0844.64 Major facilitator superfamily protein[more]
AT2G16980.27.0e-0637.93 Major facilitator superfamily protein[more]
BLAST of Cucsa.394060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659089077|ref|XP_008445315.1|2.8e-3356.96PREDICTED: hippocampus abundant transcript-like protein 1 [Cucumis melo][more]
gi|778670405|ref|XP_011649469.1|9.1e-3257.23PREDICTED: uncharacterized protein LOC105434628 isoform X2 [Cucumis sativus][more]
gi|659089075|ref|XP_008445314.1|1.4e-2447.56PREDICTED: hippocampus abundant transcript-like protein 1 [Cucumis melo][more]
gi|449450482|ref|XP_004142991.1|2.4e-2446.34PREDICTED: hippocampus abundant transcript 1 protein-like [Cucumis sativus][more]
gi|659089072|ref|XP_008445313.1|1.2e-2345.73PREDICTED: hippocampus abundant transcript 1 protein-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.394060.1Cucsa.394060.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020846Major facilitator superfamily domainunknownSSF103473MFS general substrate transportercoord: 1..112
score: 9.6
NoneNo IPR availableGENE3DG3DSA:1.20.1250.20coord: 2..56
score: 2.
NoneNo IPR availablePANTHERPTHR23504FAMILY NOT NAMEDcoord: 1..112
score: 1.2
NoneNo IPR availablePANTHERPTHR23504:SF36MAJOR FACILITATOR PROTEINcoord: 1..112
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.394060Watermelon (Charleston Gray)cgywcgB675
Cucsa.394060Watermelon (97103) v1cgywmB707
Cucsa.394060Cucurbita pepo (Zucchini)cgycpeB1047
Cucsa.394060Cucurbita pepo (Zucchini)cgycpeB1040
Cucsa.394060Bottle gourd (USVL1VR-Ls)cgylsiB638
Cucsa.394060Melon (DHL92) v3.6.1cgymedB640
Cucsa.394060Silver-seed gourdcarcgyB0177
Cucsa.394060Silver-seed gourdcarcgyB1101
Cucsa.394060Cucumber (Chinese Long) v3cgycucB596
Cucsa.394060Watermelon (97103) v2cgywmbB677
Cucsa.394060Wax gourdcgywgoB785
Cucsa.394060Cucurbita maxima (Rimu)cgycmaB1089
Cucsa.394060Cucurbita maxima (Rimu)cgycmaB1095
Cucsa.394060Cucurbita moschata (Rifu)cgycmoB1087
Cucsa.394060Cucurbita moschata (Rifu)cgycmoB1094
Cucsa.394060Wild cucumber (PI 183967)cgycpiB578
Cucsa.394060Cucumber (Chinese Long) v2cgycuB549
Cucsa.394060Melon (DHL92) v3.5.1cgymeB645