Cucsa.393860 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.393860
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Serine/arginine rich splicing factor, putative
Location	scaffold04100 : 16707 .. 20232 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATGGTTAGAATCTCATTCTTCCACCAGAGACCTAGTTGAGGTTCAGCTCTGAATCCGCCGCCGTTGTTGTTGTTGCTGGTCACCACTCTCTCCATCGCCGAATCCCATTACCTGCAGTGTGAAAAATGTCGCACTTTGGAAGATCCGGTCCTCCCGATATCAGAGATACCTACTCTCTCCTCGTCCTCAACATCACTTTCCGTATCTCCAACCCCGTTTCTTCTCTTATCTTCAAACTTCATCTCTTTTTCTCTCTCTTTTTCTTTTACTTATTCCCCCCCTTTCTTGCTTCTCAGGTACTACCGCCGATGATCTTTACCCCCTTTTCGATAAGTATGGAAAGGTCGTCGATGTCTTCATCCCCAGAGACCGCAGGTTTGCGTTTTAATATTCTTTTTCACGGGTTCTCGTGAATTGGAGTGTGTACTTTGGTTGATGGGTGTTTCTTTTTAGGACTGGGGATTCGCGAGGATTTGCGTTTGTTCGATATAAGTACGCGGATGAAGCACAGAAGGCAATTGATAAGCTTGATGGTCAGCTTCAGTTCGAACAAAAACTCACATTAAGCTTGAGCTTTTTCAATTTAACTTTGCTGCTGTTTTTATGGGAAATCAATTTGGGTTTCTACTTTGCTATCTAGGACGAATGTTGGATGGCAGAGAAATTATGGTTCAATTTGCTAAGTATGGTCCTAATGCTGAGAAAATGTGAGTTTATGAGAAATTGTTTTAAATGGTTTTGTATGTAATTTGTCACACATGTTTTGATTTTTTACTTTTGGGTTTTATCAGTCGTAAAGGGAGAGTAATGGAATCATCTTCGAAGACAAGGGGAAGGTCAAGAAGCCGCAGTCCACGTTCAAGGTGAGAGTTCTTGTCTAAATGCATATGAACTCGTATCAGAGTTCTGGTGAAGAATTTTATATGTTCTTGAGGTAATTGAATTACCCTCATGTAATTGTGAATCCAAACAAAAATTCAATGTACTCTTTTGCACAGTCATTTAGAGAGAGAGAGGCAATGCTATCCTCTCTGGTTATGGATTCTATTTCCTTGGTAGTTCATTTAGGATGGTGACTTGCCTCGTTTTTTCTGCTTTAGATTTAGCTATGCGTATTGATTTTAAGGCAAGGATATGGTTTCTCTTGATATTGCATAAACAATATGAATTTTTAGAAACAGATGCATTTTGCAAAATGTACAAACTATAAGGATATGATTTGTAACCATTCCTTCATTTAACGTCTGATGCATGAAGGAGTTCTGAAATACCAATGCTGCAATACTGTATGTTGCATCATGCAATTAAGTTATTCTAGAAAGTCTTTTTCTTTTTTTCATGAGTTGGTTCATAAATGTAATTGCTTCTGGCCTCGCCTTGTTATTTGACCAGCTTAGTGGTTATACAACGTTTTGTGGATTGCAGATAAGATATAAACAAAAGGAGTGATGAAATTAAGATGGTCTGTTGCTTGAAGCAATATATTGCAAATACGAAGTCATGCTGCTTATTTTTCTTTTTCTTTTTTTTTGTGGGATCACCAATTCTTATATGAAGCTACCTTGGATTTTTTTCTGAACTTGTATTTGATTAATTGGTTATGACAAAAAAATTATGGGATAAGGAACGAGTGGTTAATAAGACTTGTCTTAAATGGAATTTCTTATCATTACAGGCAGTTGATTGTAATCTCATTGTTGCAAGCTGGTTATTCTACCCTTCTCTTATGGATTGCAAAAACATTTCAGGCACCGTGATGACCATAGGGATAGGGATTACAGGAGAAGAAGCCGCAGTAGAAGCCGTGAGAGATATGATCGTGATAGACCCCACAGAAGTGAGAGAGAGCGCTATCGCAGTAGGAGTCGTAGTGCTAGTCCTGACCGTAGTAAAGATCGTAGGAGGGGAAGAGATGATGATGATCGACGTAGTGCTAGCCACTCTGATAGAAGGTACACAAATACATTCATAATTTTGTTACTCTTTTGTGGGATAGTCTTAAGCCCTTGCAACGCTGGCGTGGGTAATGTTTGCCAAACTATTAGTTGTTTCGGGTGGCTAAATATCTGTCCATAATTTTCCTAAGAATAACAACATTAGTTCTTCGAAGTAGGCTTGTGAGACTAAAACTAAGTAAATGCCATCTTATTCCGCAAGTATTTGTTTAGAGCTTAAGGAAACACTTTTGAATTTTTGGTCCCTGAACTTCCATAGAAGTAATGATTTAGTCTTTGAAATTTAATTTGAATAATAATGATTTAGTCCACGTGCTTTCAATTTTGTAGCAATATATTCCTTGAACTTTTAGCATATAACAAGTTAGTCTCATTTGGAAAAATTGGCAACAAAATTATGTCAACTTTTATTGCACGACGACCATAGATGACAAATTTGATCACTAATCAGTTTTAAATTTCATTAAATCTGTATAATGTTTTTATTCTGGGTAGGGACAGAAGCTTAACCAACTGTAAGGTACACAGGGACTAAATTGTTACTTGTCATATAGTTCAAGGACTAAAGGTTACAAATTTGAATATACGTAAACTAAACAAAAAATGGGGACTAAATGCTTGGCTGAAAAATAAAAACCGTTTCCGAAAATATTTTTCATTTAACTTCACAGAAATCTCACACTGCCATGAACCCAGGAAGGTCCTCATAACTTCACATAAATCTCATATTTATCATATTTCATGTTTTTAGCAATCACTTTTTTCATTTAACTTCACAAAAATCTCACATTGCCACAAACCTAGCCAGTATCCAGGTTCTCCTAATCATCCATTGTTATTTTATTTTATTTTTCTGGTGGGTCTGTATTCTAATTGGAAATAGATTCTATACTGATTTCAGCATGTCGCCCACCCGACATTCCCCTGATACTCGGAGAAGCATATCTCCACGTAAGACACCGCCATCTAGGGCTAGAAGCGACGATGAACACTCACCAAAGGGAGATAATGGCTCACCAGATGATAAACCAGTTGATTCTCGTAGTCCATCTCCTGCTAGATCCGATGCTGATGTGAGTTAAACCTACCATGCTTATAGTATTATTACTTGCTGCCAGTGATTTTATTATAAATATATTTCTGTTCTGTCTAGTGACAAGCAAAAATATACCTGCAGGAGTGATATACATGCCATTAGAGATAATTTATGGAGCTAAGACATTGGATGTTAGAAATTGTCTAAGCATATTTATAATGGGAACAAGCATGGCATCCCATGGAGGGATATTTTGCACAATTGTATCTGCCTTTTTGTACTACAAGGACTGATTGGATATCAAGATAGACATGTAGGATCCTTCTCCTAATTAGTTTATGAGTTTTTTTTTCTTTTTCTTCTTTTTCTTTTTTAGAATTCAAAGTAGTATCTTTGTACTATTTTACATGCAAAATATGAGTCTTCCCAGTGTTTGATTTTTACCTCCTTAGATGTATACTGATTATGAATTGATTCTGCATTGGATCTTGTCCTTTTGGAACCCTATTCTATTCATCCCTTATTTTGTAGT

mRNA sequence

AAAATGGTTAGAATCTCATTCTTCCACCAGAGACCTAGTTGAGGTTCAGCTCTGAATCCGCCGCCGTTGTTGTTGTTGCTGGTCACCACTCTCTCCATCGCCGAATCCCATTACCTGCAGTGTGAAAAATGTCGCACTTTGGAAGATCCGGTCCTCCCGATATCAGAGATACCTACTCTCTCCTCGTCCTCAACATCACTTTCCGTACTACCGCCGATGATCTTTACCCCCTTTTCGATAAGTATGGAAAGGTCGTCGATGTCTTCATCCCCAGAGACCGCAGGACTGGGGATTCGCGAGGATTTGCGTTTGTTCGATATAAGTACGCGGATGAAGCACAGAAGGCAATTGATAAGCTTGATGGACGAATGTTGGATGGCAGAGAAATTATGGTTCAATTTGCTAAGTATGGTCCTAATGCTGAGAAAATTCGTAAAGGGAGAGTAATGGAATCATCTTCGAAGACAAGGGGAAGGTCAAGAAGCCGCAGTCCACGTTCAAGGCACCGTGATGACCATAGGGATAGGGATTACAGGAGAAGAAGCCGCAGTAGAAGCCGTGAGAGATATGATCGTGATAGACCCCACAGAAGTGAGAGAGAGCGCTATCGCAGTAGGAGTCGTAGTGCTAGTCCTGACCGTAGTAAAGATCGTAGGAGGGGAAGAGATGATGATGATCGACGTAGTGCTAGCCACTCTGATAGAAGCATGTCGCCCACCCGACATTCCCCTGATACTCGGAGAAGCATATCTCCACGTAAGACACCGCCATCTAGGGCTAGAAGCGACGATGAACACTCACCAAAGGGAGATAATGGCTCACCAGATGATAAACCAGTTGATTCTCGTAGTCCATCTCCTGCTAGATCCGATGCTGATGAGTGATATACATGCCATTAGAGATAATTTATGGAGCTAAGACATTGGATGTTAGAAATTGTCTAAGCATATTTATAATGGGAACAAGCATGGCATCCCATGGAGGGATATTTTGCACAATTGTATCTGCCTTTTTGTACTACAAGGACTGATTGGATATCAAGATAGACATGTAGGATCCTTCTCCTAATTAGTTTATGAGtttttttttctttttcttctttttcttttttAGAATTCAAAGTAGTATCTTTGTACTATTTTACATGCAAAATATGAGTCTTCCCAGTGTTTGATTTTTACCTCCTTAGATGTATACTGATTATGAATTGATTCTGCATTGGATCTTGTCCTTTTGGAACCCTATTCTATTCATCCCTTATTTTGTAGT

Coding sequence (CDS)

ATGTCGCACTTTGGAAGATCCGGTCCTCCCGATATCAGAGATACCTACTCTCTCCTCGTCCTCAACATCACTTTCCGTACTACCGCCGATGATCTTTACCCCCTTTTCGATAAGTATGGAAAGGTCGTCGATGTCTTCATCCCCAGAGACCGCAGGACTGGGGATTCGCGAGGATTTGCGTTTGTTCGATATAAGTACGCGGATGAAGCACAGAAGGCAATTGATAAGCTTGATGGACGAATGTTGGATGGCAGAGAAATTATGGTTCAATTTGCTAAGTATGGTCCTAATGCTGAGAAAATTCGTAAAGGGAGAGTAATGGAATCATCTTCGAAGACAAGGGGAAGGTCAAGAAGCCGCAGTCCACGTTCAAGGCACCGTGATGACCATAGGGATAGGGATTACAGGAGAAGAAGCCGCAGTAGAAGCCGTGAGAGATATGATCGTGATAGACCCCACAGAAGTGAGAGAGAGCGCTATCGCAGTAGGAGTCGTAGTGCTAGTCCTGACCGTAGTAAAGATCGTAGGAGGGGAAGAGATGATGATGATCGACGTAGTGCTAGCCACTCTGATAGAAGCATGTCGCCCACCCGACATTCCCCTGATACTCGGAGAAGCATATCTCCACGTAAGACACCGCCATCTAGGGCTAGAAGCGACGATGAACACTCACCAAAGGGAGATAATGGCTCACCAGATGATAAACCAGTTGATTCTCGTAGTCCATCTCCTGCTAGATCCGATGCTGATGAGTGA

Protein sequence

MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE*

Homology

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BLAST of Cucsa.393860 vs. Swiss-Prot
Match: SC35_ARATH (Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana GN=SC35 PE=1 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.1e-76
Identity = 168/271 (61.99%), Postives = 191/271 (70.48%), Query Frame = 1


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVME---SSSKTRGRS 120
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KGRV+E    S ++R RS
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 --------------------RSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSER 180
                               RSRSPR R RDD+R++DYR+RSRSRS +R  R+R    +R
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDR--RERHEEKDR 180

Query: 181 E-RYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRSMSPTRHSPDTRRSISPRKTPPSR 240
           + R R+RSRSASPD  K R RGR D++ RS S S  S SP R SP   RS SP+KT P+R
Sbjct: 181 DHRRRTRSRSASPD-EKRRVRGRYDNESRSHSRS-LSASPARRSP---RSSSPQKTSPAR 240

Query: 241 ARSDDEHSPKGDNGSPDDKPVDSRSPSPARS 248
             S D+ S             + RSPSP RS
Sbjct: 241 EVSPDKRS-------------NERSPSPRRS 251

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BLAST of Cucsa.393860 vs. Swiss-Prot
Match: SRSF2_CHICK (Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.5e-37
Identity = 101/219 (46.12%), Postives = 127/219 (57.99%), Query Frame = 1


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKTRGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G        +    RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSSGYGRRSRS 122

Query: 124 PRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDD 183
           PR R R   R R    RSRSRSR RY R +     R R RSRSRS S  RS  R + +  
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRSK----SRSRTRSRSRSTSKSRSARRSKSKSS 182

Query: 184 DDRRSASHS---DRSMSP----TRHSPDTRRSISPRKTP 214
              RS S S    RS SP     R S    RS SP K+P
Sbjct: 183 SVSRSRSRSRSRSRSRSPPPTSKRESNSRSRSKSPPKSP 213

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BLAST of Cucsa.393860 vs. Swiss-Prot
Match: SRSF2_PIG (Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 7.1e-37
Identity = 99/216 (45.83%), Postives = 125/216 (57.87%), Query Frame = 1


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKTRGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDD 183
           PR R R   R R    RSRSRSR RY R +     R R RSRSRS S  RS  R + +  
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRSK----SRSRTRSRSRSTSKSRSARRSKSKSS 182

Query: 184 DDRRSASHS---DRSMSPTRHSPDTRRSISPRKTPP 215
              RS S S    RS SP   S    +S S  K+PP
Sbjct: 183 SVSRSRSRSRSRSRSRSPPPASKRESKSRSRSKSPP 210

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BLAST of Cucsa.393860 vs. Swiss-Prot
Match: SRSF2_RAT (Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus GN=Srsf2 PE=1 SV=3)

HSP 1 Score: 155.6 bits (392), Expect = 7.1e-37
Identity = 101/219 (46.12%), Postives = 126/219 (57.53%), Query Frame = 1


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKTRGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDD 183
           PR R R   R R    RSRSRSR RY R +     R R RSRSRS S  RS  R + +  
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRSK----SRSRTRSRSRSTSKSRSARRSKSKSS 182

Query: 184 DDRRSASHS---DRSMSP----TRHSPDTRRSISPRKTP 214
              RS S S    RS SP     R S    RS SP K+P
Sbjct: 183 SVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSP 213

[Close]

BLAST of Cucsa.393860 vs. Swiss-Prot
Match: SRSF2_MOUSE (Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2 PE=1 SV=4)

HSP 1 Score: 155.6 bits (392), Expect = 7.1e-37
Identity = 101/219 (46.12%), Postives = 126/219 (57.53%), Query Frame = 1


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKTRGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDD 183
           PR R R   R R    RSRSRSR RY R +     R R RSRSRS S  RS  R + +  
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRSK----SRSRTRSRSRSTSKSRSARRSKSKSS 182

Query: 184 DDRRSASHS---DRSMSP----TRHSPDTRRSISPRKTP 214
              RS S S    RS SP     R S    RS SP K+P
Sbjct: 183 SVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSP 213

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BLAST of Cucsa.393860 vs. TrEMBL
Match: A0A0A0LQG4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G345920 PE=4 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 1.3e-141
Identity = 250/251 (99.60%), Postives = 251/251 (100.00%), Query Frame = 1


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180
           SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD
Sbjct: 121 SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDDRRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSR 240
           DD+RRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSR
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSR 240

Query: 241 SPSPARSDADE 252
           SPSPARSDADE
Sbjct: 241 SPSPARSDADE 251

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BLAST of Cucsa.393860 vs. TrEMBL
Match: E0CRK0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g05550 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 1.3e-101
Identity = 194/257 (75.49%), Postives = 213/257 (82.88%), Query Frame = 1


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDL+PLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLFPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKA++KLDGR +DGREIMVQFAKYGPNAE+I KGR++E+SSK++GRSRSR
Sbjct: 61  FVRYKYADEAQKAVEKLDGRNVDGREIMVQFAKYGPNAERIHKGRIIETSSKSKGRSRSR 120

Query: 121 SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERE-RYRSRSRSASPDRSKDRRRGR 180
           SPR RHRD++RDRDYR+RSRSRSR R DRDR    ER+ R RSRSRSASPD  KDR RGR
Sbjct: 121 SPRPRHRDEYRDRDYRKRSRSRSRGRNDRDRYRGKERDSRRRSRSRSASPDHHKDRGRGR 180

Query: 181 DDDDRRSASHSDRSMSPTRHSPDTRRSISPRKTPPSR-----ARSDDEHSPKGDNGSPDD 240
            DD+RRS S S  S SP R SP  R S SPR+TPPSR      R  +E SP   + SP  
Sbjct: 181 YDDERRSRSRSYGSASPARRSPSPRGSPSPRRTPPSREESPVGRKRNERSPTPKSVSPRG 240

Query: 241 KPVDSRSPSPARSDADE 252
           +P DSRSPSP  SDADE
Sbjct: 241 RPADSRSPSPHNSDADE 257

[Close]

BLAST of Cucsa.393860 vs. TrEMBL
Match: W9RSV8_9ROSA (Serine/arginine-rich splicing factor 2 OS=Morus notabilis GN=L484_021576 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.7e-98
Identity = 189/255 (74.12%), Postives = 213/255 (83.53%), Query Frame = 1


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDL+PLFD+YGKVVDVFIPRDRRTG+SRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLFPLFDRYGKVVDVFIPRDRRTGESRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKA++KLDGR++DGREIMVQFAKYGPNAE+I KGR++ES+SK R +SRSR
Sbjct: 61  FVRYKYADEAQKAVEKLDGRVVDGREIMVQFAKYGPNAERIHKGRIIESASKFRSKSRSR 120

Query: 121 SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERE-RYRSRSRSASPDRSKDRRRGR 180
           SPR R+RD++RDRD RRRSRSRSR+RYDRD+ HRSE+E RYRSRSRS SPD  KDR RGR
Sbjct: 121 SPRPRYRDENRDRD-RRRSRSRSRDRYDRDKYHRSEKESRYRSRSRSVSPDYHKDRGRGR 180

Query: 181 DDDDRRSASHSDRSMSPTRHSPDTRRSISPRKTPP----SRARSDDEHSPKGDNGSPDDK 240
            DD+RRS S S  S SP R SP +RRS SPR+TP        R  +E SP   + SP  K
Sbjct: 181 YDDERRSRSRSYESASPVRRSPKSRRSPSPRRTPSRGENPEIRDLNERSPASKDASPRGK 240

Query: 241 PVDSRSPSPARSDAD 251
             DSRS SP RSDA+
Sbjct: 241 RADSRSASPHRSDAE 254

[Close]

BLAST of Cucsa.393860 vs. TrEMBL
Match: A0A067GMJ0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022930mg PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 1.1e-97
Identity = 186/252 (73.81%), Postives = 213/252 (84.52%), Query Frame = 1


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFG+SGPPDIRDTYSLLVLNITFRTTADDL+PLF+KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKA+D+LDGR++DGREI VQFAKYGPNAEKI++GR++ESSSK++GRSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYGPNAEKIQQGRIVESSSKSKGRSRSR 120

Query: 121 SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERE-RYRSRSRSASPDRSKDRRRGR 180
           SPR R+RD+HRD+DYRRRSRSRSRERYDRDR    ER+ R RSRSRSASPDR K+  RG+
Sbjct: 121 SPRPRYRDEHRDKDYRRRSRSRSRERYDRDRYRSKERDHRRRSRSRSASPDRHKNHGRGK 180

Query: 181 DDDDRRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDS 240
            D++RRS S S  S SP RHSP+++RS SPRKT      + DE SP     SPD +   S
Sbjct: 181 YDEERRSRSRSYESASPPRHSPNSKRSPSPRKTHKGEI-NPDERSPALKRVSPDGRRSVS 240

Query: 241 RSPSPARSDADE 252
           RS SP RS A+E
Sbjct: 241 RSLSPRRSPANE 251

[Close]

BLAST of Cucsa.393860 vs. TrEMBL
Match: A0A103YDT4_CYNCS (Nucleotide-binding, alpha-beta plait OS=Cynara cardunculus var. scolymus GN=Ccrd_014356 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 2.5e-97
Identity = 182/256 (71.09%), Postives = 213/256 (83.20%), Query Frame = 1


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGR+GPPDIRDTYSLLVLNITFRTTADDL+PLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRAGPPDIRDTYSLLVLNITFRTTADDLFPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKA++KLDGR++DGREIMVQFAKYGP+AE+I KGR++E + K +GRSRSR
Sbjct: 61  FVRYKYADEAQKAVEKLDGRVVDGREIMVQFAKYGPDAERIHKGRILEPAEKLKGRSRSR 120

Query: 121 SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180
           SPR RHRDD++D+DYRRR+RSRSR+R D +R    +RER+RSRSRS SPD  K+RRRGR 
Sbjct: 121 SPRPRHRDDYKDKDYRRRNRSRSRDRSDHERHRGRDRERHRSRSRSRSPDYRKERRRGRY 180

Query: 181 DDDRRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARS-----DDEHSPKGDNGSPDDK 240
           DD++  +   +RS+SP R S   RRS SPR+TPPSR+RS     + E S    + SP  +
Sbjct: 181 DDEKGRSRSPNRSISPARRSGSPRRSPSPRRTPPSRSRSPVARIEKERSATPKSVSPRGR 240

Query: 241 PVDSRSPSPARSDADE 252
             DSRSPSP RSDADE
Sbjct: 241 -ADSRSPSPQRSDADE 255

[Close]

BLAST of Cucsa.393860 vs. TAIR10
Match: AT5G64200.1 (AT5G64200.1 ortholog of human splicing factor SC35)

HSP 1 Score: 287.0 bits (733), Expect = 1.2e-77
Identity = 168/271 (61.99%), Postives = 191/271 (70.48%), Query Frame = 1


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVME---SSSKTRGRS 120
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KGRV+E    S ++R RS
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 --------------------RSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSER 180
                               RSRSPR R RDD+R++DYR+RSRSRS +R  R+R    +R
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDR--RERHEEKDR 180

Query: 181 E-RYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRSMSPTRHSPDTRRSISPRKTPPSR 240
           + R R+RSRSASPD  K R RGR D++ RS S S  S SP R SP   RS SP+KT P+R
Sbjct: 181 DHRRRTRSRSASPD-EKRRVRGRYDNESRSHSRS-LSASPARRSP---RSSSPQKTSPAR 240

Query: 241 ARSDDEHSPKGDNGSPDDKPVDSRSPSPARS 248
             S D+ S             + RSPSP RS
Sbjct: 241 EVSPDKRS-------------NERSPSPRRS 251

[Close]

BLAST of Cucsa.393860 vs. TAIR10
Match: AT3G13570.1 (AT3G13570.1 SC35-like splicing factor 30A)

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-22
Identity = 92/251 (36.65%), Postives = 126/251 (50.20%), Query Frame = 1


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           FG S   D+    SLLV N+      +DL   F+++G V D+++PRD  TGD RGF F++
Sbjct: 27  FGGSRDSDLPT--SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQ 86

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKT-RGRSRSRSP 123
           +    +A +A  ++DG +L GRE+ V FA+   N +K  + R  +   ++ R + R RSP
Sbjct: 87  FMDPADAAEAKHQMDGYLLLGRELTVVFAE--ENRKKPTEMRTRDRGGRSNRFQDRRRSP 146

Query: 124 RSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDD 183
               R        RR  RSRSR R     P +      R +SRS SP   +DRR  ++  
Sbjct: 147 PRYSRSP----PPRRGRRSRSRSRGYNSPPAK------RHQSRSVSP---QDRRYEKERS 206

Query: 184 DRRSASHSD---RSMSPTR---HSPDTRRSISPRKT---PPSRARSDDEHSPKGDNGSPD 243
             RS  H+    RS SP R   HS   RRS+SPRK     P +ARS           SP 
Sbjct: 207 YSRSPPHNGSRVRSGSPGRVKSHSRSPRRSVSPRKNRSYTPEQARSQ----------SP- 248

Query: 244 DKPVDSRSPSP 245
             P  SRSP+P
Sbjct: 267 -VPRQSRSPTP 248

[Close]

BLAST of Cucsa.393860 vs. TAIR10
Match: AT1G55310.3 (AT1G55310.3 SC35-like splicing factor 33)

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-22
Identity = 96/268 (35.82%), Postives = 121/268 (45.15%), Query Frame = 1


Query: 17  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTG------------DSRGFAFVRY 76
           SLLV N+      +DL   F+++G V D+++PRD  TG            D RGF FV++
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQF 96

Query: 77  KYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGR-------- 136
               +A  A   +DG +L GRE+ V FA+         + R     S+ R R        
Sbjct: 97  MDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEMRARERGGGSRFRDRRRTPPRYY 156

Query: 137 SRSRSPRSRH-RDDHRDRDY-----RR---RSRSRSRERYDRDRPHRSERERYRSRSRSA 196
           SRSRSP  R  R   R  DY     RR   RS S   ERYD  R +        SR RS 
Sbjct: 157 SRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSL 216

Query: 197 SPDRSKDRRRGRDDDDRRSASHSD-RSMSPTRHSPDTRRSISPRKT---PPSRARSDDEH 252
           +P R K   R      RRS S S  RS SP   SP   RS+SPR++    P R+R     
Sbjct: 217 TPVRGKS--RSLSPSPRRSISRSPRRSRSP---SPKRNRSVSPRRSISRSPRRSR----- 276

[Close]

BLAST of Cucsa.393860 vs. TAIR10
Match: AT5G18810.1 (AT5G18810.1 SC35-like splicing factor 28)

HSP 1 Score: 95.9 bits (237), Expect = 3.8e-20
Identity = 71/230 (30.87%), Postives = 111/230 (48.26%), Query Frame = 1


Query: 18  LLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKL 77
           LL+ N+      +DL   F+++G + D+++PR+  TG+ RGF FV+Y+YA++A +A+ ++
Sbjct: 49  LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108

Query: 78  DGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRR 137
           + +++ GREI + FA+     E  +  + M +++ T G               R  DY+R
Sbjct: 109 NHKVIGGREIAIVFAE-----ENRKTPQEMRTTNGTSG---------------RHGDYKR 168

Query: 138 RSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRSMSPT 197
            S             HRS R RYRS SRS SP R          + R S    D   SP 
Sbjct: 169 TS-------------HRSPRRRYRSHSRSRSPPRR---------ESRHSKVREDDLYSPR 228

Query: 198 RHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARS 248
           R S    RS  PR     ++R+    SP+ +       P+ SR  S +RS
Sbjct: 229 RRSRSISRSPLPRNEREYKSRNC--RSPREERVL---TPIRSRCLSRSRS 231

HSP 2 Score: 30.8 bits (68), Expect = 1.5e+00
Identity = 18/39 (46.15%), Postives = 22/39 (56.41%), Query Frame = 1


Query: 111 SKTRGRSRSRSPRSRHRDDHRDR----DYRRRSRSRSRE 146
           ++ R RSRS SPR R R   R+R    D R R R  SR+
Sbjct: 2   ARARSRSRSYSPRPRDRSPPRERKGYDDNRLRERPSSRD 40

[Close]

BLAST of Cucsa.393860 vs. TAIR10
Match: AT3G55460.1 (AT3G55460.1 SC35-like splicing factor 30)

HSP 1 Score: 94.7 bits (234), Expect = 8.4e-20
Identity = 85/240 (35.42%), Postives = 113/240 (47.08%), Query Frame = 1


Query: 17  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDK 76
           SLLV NI      ++L   F+++G V DV+IPRD  +G  RGFAFV +  A +A +A   
Sbjct: 48  SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRS 107

Query: 77  LDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDY- 136
           ++ R   GREI V  A          + R      + + R+RSR P        RDR + 
Sbjct: 108 MNRRSFAGREITVVVAS---------ESRKRPEEMRVKTRTRSREP-----SGSRDRSHG 167

Query: 137 RRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRSMS 196
           R RSRS SR R  R RP  S R RYRSRS S +P R     RG +D+     ++S RS S
Sbjct: 168 RSRSRSISRSRSPR-RPSDS-RSRYRSRSYSPAPRRRGGPPRGEEDE-----NYSRRSYS 227

Query: 197 PTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDK----PVDSRSPSPARSDADE 252
           P                 P R R+ D    +      +D+       SRSPS +RS + E
Sbjct: 228 PGYE--------GAAAAAPDRDRNGDNEIREKPGYEAEDRRRGGRAVSRSPSGSRSRSVE 258

[Close]

BLAST of Cucsa.393860 vs. NCBI nr
Match: gi|778670373|ref|XP_011649457.1| (PREDICTED: serine/arginine-rich splicing factor SC35 [Cucumis sativus])

HSP 1 Score: 510.4 bits (1313), Expect = 1.8e-141
Identity = 250/251 (99.60%), Postives = 251/251 (100.00%), Query Frame = 1


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180
           SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD
Sbjct: 121 SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDDRRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSR 240
           DD+RRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSR
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSR 240

Query: 241 SPSPARSDADE 252
           SPSPARSDADE
Sbjct: 241 SPSPARSDADE 251

[Close]

BLAST of Cucsa.393860 vs. NCBI nr
Match: gi|659089125|ref|XP_008445340.1| (PREDICTED: serine/arginine-rich splicing factor 2-like [Cucumis melo])

HSP 1 Score: 500.4 bits (1287), Expect = 1.9e-138
Identity = 245/251 (97.61%), Postives = 249/251 (99.20%), Query Frame = 1


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180
           SPRSRHRDD+RDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD
Sbjct: 121 SPRSRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDDRRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSR 240
           DD+RRSASHSDRSMSPTRHSPDTRRSISPR+TPPSR RSD+E SPKGDNGSPDDKPVDSR
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNERSPKGDNGSPDDKPVDSR 240

Query: 241 SPSPARSDADE 252
           SPSPARSDADE
Sbjct: 241 SPSPARSDADE 251

[Close]

BLAST of Cucsa.393860 vs. NCBI nr
Match: gi|1009136195|ref|XP_015885404.1| (PREDICTED: serine/arginine-rich splicing factor SC35-like [Ziziphus jujuba])

HSP 1 Score: 388.3 bits (996), Expect = 1.0e-104
Identity = 200/260 (76.92%), Postives = 220/260 (84.62%), Query Frame = 1


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDL+PLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLFPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKA++KLDGR++DGREIMVQFAKYGPNAE+I KGR++ESSSK +GRSRSR
Sbjct: 61  FVRYKYADEAQKAVEKLDGRVVDGREIMVQFAKYGPNAERIHKGRIVESSSKLKGRSRSR 120

Query: 121 SPRSRHRDDHRDRDY-----RRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDR 180
           SPR RHRD++RDRD      RRRSRSRSR+RYDRDR HRS+  RYRSRSRSASPD SKDR
Sbjct: 121 SPRPRHRDEYRDRDRDRDRDRRRSRSRSRDRYDRDRYHRSD-NRYRSRSRSASPDHSKDR 180

Query: 181 RRGRDDDDRRSASHSDRSMSPTRHSPDTRRSISPRKTPP----SRARSDDEHSPKGDNGS 240
            RGR DD+RRS S S  S SP R SP +RRS SPR+TPP       R+ D+ SP   + S
Sbjct: 181 GRGRYDDERRSRSQSYGSASPARRSPKSRRSPSPRRTPPRVENPEGRNFDDRSPAPKDVS 240

Query: 241 PDDKPVDSRSPSPARSDADE 252
           P  +PVDSRSPSP RSDADE
Sbjct: 241 PRGRPVDSRSPSPHRSDADE 259

[Close]

BLAST of Cucsa.393860 vs. NCBI nr
Match: gi|225459316|ref|XP_002285794.1| (PREDICTED: serine/arginine-rich splicing factor SC35 [Vitis vinifera])

HSP 1 Score: 377.5 bits (968), Expect = 1.8e-101
Identity = 194/257 (75.49%), Postives = 213/257 (82.88%), Query Frame = 1


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDL+PLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLFPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKA++KLDGR +DGREIMVQFAKYGPNAE+I KGR++E+SSK++GRSRSR
Sbjct: 61  FVRYKYADEAQKAVEKLDGRNVDGREIMVQFAKYGPNAERIHKGRIIETSSKSKGRSRSR 120

Query: 121 SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERE-RYRSRSRSASPDRSKDRRRGR 180
           SPR RHRD++RDRDYR+RSRSRSR R DRDR    ER+ R RSRSRSASPD  KDR RGR
Sbjct: 121 SPRPRHRDEYRDRDYRKRSRSRSRGRNDRDRYRGKERDSRRRSRSRSASPDHHKDRGRGR 180

Query: 181 DDDDRRSASHSDRSMSPTRHSPDTRRSISPRKTPPSR-----ARSDDEHSPKGDNGSPDD 240
            DD+RRS S S  S SP R SP  R S SPR+TPPSR      R  +E SP   + SP  
Sbjct: 181 YDDERRSRSRSYGSASPARRSPSPRGSPSPRRTPPSREESPVGRKRNERSPTPKSVSPRG 240

Query: 241 KPVDSRSPSPARSDADE 252
           +P DSRSPSP  SDADE
Sbjct: 241 RPADSRSPSPHNSDADE 257

[Close]

BLAST of Cucsa.393860 vs. NCBI nr
Match: gi|703135589|ref|XP_010105917.1| (Serine/arginine-rich splicing factor 2 [Morus notabilis])

HSP 1 Score: 367.1 bits (941), Expect = 2.5e-98
Identity = 189/255 (74.12%), Postives = 213/255 (83.53%), Query Frame = 1


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDL+PLFD+YGKVVDVFIPRDRRTG+SRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLFPLFDRYGKVVDVFIPRDRRTGESRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKA++KLDGR++DGREIMVQFAKYGPNAE+I KGR++ES+SK R +SRSR
Sbjct: 61  FVRYKYADEAQKAVEKLDGRVVDGREIMVQFAKYGPNAERIHKGRIIESASKFRSKSRSR 120

Query: 121 SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERE-RYRSRSRSASPDRSKDRRRGR 180
           SPR R+RD++RDRD RRRSRSRSR+RYDRD+ HRSE+E RYRSRSRS SPD  KDR RGR
Sbjct: 121 SPRPRYRDENRDRD-RRRSRSRSRDRYDRDKYHRSEKESRYRSRSRSVSPDYHKDRGRGR 180

Query: 181 DDDDRRSASHSDRSMSPTRHSPDTRRSISPRKTPP----SRARSDDEHSPKGDNGSPDDK 240
            DD+RRS S S  S SP R SP +RRS SPR+TP        R  +E SP   + SP  K
Sbjct: 181 YDDERRSRSRSYESASPVRRSPKSRRSPSPRRTPSRGENPEIRDLNERSPASKDASPRGK 240

Query: 241 PVDSRSPSPARSDAD 251
             DSRS SP RSDA+
Sbjct: 241 RADSRSASPHRSDAE 254

The following BLAST results are available for this feature:

BLAST of Cucsa.393860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SC35_ARATH	2.1e-76	61.99	Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana GN=SC35 PE=1 S...	[more]
SRSF2_CHICK	2.5e-37	46.12	Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2 PE=2 SV=1	[more]
SRSF2_PIG	7.1e-37	45.83	Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2 PE=2 SV=1	[more]
SRSF2_RAT	7.1e-37	46.12	Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus GN=Srsf2 PE=1 SV=3	[more]
SRSF2_MOUSE	7.1e-37	46.12	Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2 PE=1 SV=4	[more]

BLAST of Cucsa.393860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQG4_CUCSA	1.3e-141	99.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G345920 PE=4 SV=1	[more]
E0CRK0_VITVI	1.3e-101	75.49	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g05550 PE=4 SV=...	[more]
W9RSV8_9ROSA	1.7e-98	74.12	Serine/arginine-rich splicing factor 2 OS=Morus notabilis GN=L484_021576 PE=4 SV...	[more]
A0A067GMJ0_CITSI	1.1e-97	73.81	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022930mg PE=4 SV=1	[more]
A0A103YDT4_CYNCS	2.5e-97	71.09	Nucleotide-binding, alpha-beta plait OS=Cynara cardunculus var. scolymus GN=Ccrd...	[more]

BLAST of Cucsa.393860 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64200.1	1.2e-77	61.99	ortholog of human splicing factor SC35	[more]
AT3G13570.1	1.4e-22	36.65	SC35-like splicing factor 30A	[more]
AT1G55310.3	1.8e-22	35.82	SC35-like splicing factor 33	[more]
AT5G18810.1	3.8e-20	30.87	SC35-like splicing factor 28	[more]
AT3G55460.1	8.4e-20	35.42	SC35-like splicing factor 30	[more]

BLAST of Cucsa.393860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778670373\|ref\|XP_011649457.1\|	1.8e-141	99.60	PREDICTED: serine/arginine-rich splicing factor SC35 [Cucumis sativus]	[more]
gi\|659089125\|ref\|XP_008445340.1\|	1.9e-138	97.61	PREDICTED: serine/arginine-rich splicing factor 2-like [Cucumis melo]	[more]
gi\|1009136195\|ref\|XP_015885404.1\|	1.0e-104	76.92	PREDICTED: serine/arginine-rich splicing factor SC35-like [Ziziphus jujuba]	[more]
gi\|225459316\|ref\|XP_002285794.1\|	1.8e-101	75.49	PREDICTED: serine/arginine-rich splicing factor SC35 [Vitis vinifera]	[more]
gi\|703135589\|ref\|XP_010105917.1\|	2.5e-98	74.12	Serine/arginine-rich splicing factor 2 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.393860.1	Cucsa.393860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..87 score: 3.9
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..90 score: 5.3
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 16..94 score: 1
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 9..95 score: 1.6
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 8..104 score: 6.72
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..251 score: 6.2E
None	No IPR available	PANTHER	PTHR23147:SF10	SUBFAMILY NOT NAMED	coord: 1..251 score: 6.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.393860	Csa2G345920	Cucumber (Chinese Long) v2	cgycuB549
Cucsa.393860	MELO3C011357	Melon (DHL92) v3.5.1	cgymeB645
Cucsa.393860	CSPI02G16670	Wild cucumber (PI 183967)	cgycpiB578
Cucsa.393860	MELO3C011357.2	Melon (DHL92) v3.6.1	cgymedB640
Cucsa.393860	CsaV3_2G024240	Cucumber (Chinese Long) v3	cgycucB596

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None