Cucsa.392780 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.392780
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Descriptionhydroxyproline-rich glycoprotein family protein
Locationscaffold04070 : 56806 .. 57001 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCGATCCAAGGTGTTGAAAAGCCATGCAAAGGTGAATTTAAAGTATAAAACTTTGATATAAaGGGTTAAAaTTTGAGGTATTAAGTTACCTAAAAATGATACTCCTAATCGCCTCAAACTTCCCATCGCATTCAAATATCCAGAAAAGTATAAAAGTCTCACTGATCTGATGATATCTCCTATCAACACGG

mRNA sequence

ATGAATCGATCCAAGGTGTTGAAAAGCCATGCAAAGTTACCTAAAAATGATACTCCTAATCGCCTCAAACTTCCCATCGCATTCAAATATCCAGAAAAGTATAAAAGTCTCACTGATCTGATGATATCTCCTATCAACACGG

Coding sequence (CDS)

ATGAATCGATCCAAGGTGTTGAAAAGCCATGCAAAGTTACCTAAAAATGATACTCCTAATCGCCTCAAACTTCCCATCGCATTCAAATATCCAGAAAAGTATAAAAGTCTCACTGATCTGATGATATCTCCTATCAACACGG

Protein sequence

MNRSKVLKSHAKLPKNDTPNRLKLPIAFKYPEKYKSLTDLMISPINTX
Homology
[Close]
BLAST of Cucsa.392780 vs. TrEMBL
Match: A0A0A0L0M1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G101270 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 7.1e-09
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 1 

Query: 1   MNRSKVLKSHAK------------------LPKNDTPNRLKLPIAFKYPEKYKSLTDLMI 47
           M+RSKV KS AK                  LPKN TPNRLKLP+AFKYPE+YKS TD+MI
Sbjct: 96  MDRSKVPKSPAKVNLECKTPIQRVKMGGIELPKNGTPNRLKLPVAFKYPERYKSPTDMMI 155

[Close]
BLAST of Cucsa.392780 vs. TrEMBL
Match: B9SNP6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1025190 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.6e-06
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1 

Query: 4  SKVLKSHAKLPKNDTPNRLKLPIAFKYPEKYKSLTDLMISPI 46
          SK L S   L K+ TP+RLK+P AFKYPE+Y+S TDLM+SPI
Sbjct: 33 SKSLNSSGDLRKSSTPDRLKVPKAFKYPERYRSPTDLMVSPI 74

[Close]
BLAST of Cucsa.392780 vs. TAIR10
Match: AT3G02120.1 (AT3G02120.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 48.1 bits (113), Expect = 1.7e-06
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1 

Query: 13 LPKNDTPNRLKLPIAFKYPEKYKSLTDLMISPI 46
          + K  TP RL++PIAFKYPE+Y+S TD M+SP+
Sbjct: 54 MKKIGTPERLRVPIAFKYPERYRSPTDAMMSPV 86

[Close]
BLAST of Cucsa.392780 vs. NCBI nr
Match: gi|778691860|ref|XP_011653365.1| (PREDICTED: uncharacterized protein LOC105435203 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-08
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 1 

Query: 1   MNRSKVLKSHAK------------------LPKNDTPNRLKLPIAFKYPEKYKSLTDLMI 47
           M+RSKV KS AK                  LPKN TPNRLKLP+AFKYPE+YKS TD+MI
Sbjct: 96  MDRSKVPKSPAKVNLECKTPIQRVKMGGIELPKNGTPNRLKLPVAFKYPERYKSPTDMMI 155

[Close]
BLAST of Cucsa.392780 vs. NCBI nr
Match: gi|659125937|ref|XP_008462927.1| (PREDICTED: uncharacterized protein LOC103501189 [Cucumis melo])

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-08
Identity = 38/64 (59.38%), Postives = 41/64 (64.06%), Query Frame = 1 

Query: 1   MNRSKVLKSHAK------------------LPKNDTPNRLKLPIAFKYPEKYKSLTDLMI 47
           M+RSKV KS  K                  LPKN TPNRLKLPIAFKYPE+YKS TDLMI
Sbjct: 96  MDRSKVPKSPGKVNLECKTPTQRVKIGGIELPKNGTPNRLKLPIAFKYPERYKSPTDLMI 155

[Close]
BLAST of Cucsa.392780 vs. NCBI nr
Match: gi|255573378|ref|XP_002527615.1| (PREDICTED: uncharacterized protein LOC8289594 [Ricinus communis])

HSP 1 Score: 57.4 bits (137), Expect = 8.1e-06
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1 

Query: 4  SKVLKSHAKLPKNDTPNRLKLPIAFKYPEKYKSLTDLMISPI 46
          SK L S   L K+ TP+RLK+P AFKYPE+Y+S TDLM+SPI
Sbjct: 33 SKSLNSSGDLRKSSTPDRLKVPKAFKYPERYRSPTDLMVSPI 74

The following BLAST results are available for this feature:
BLAST of Cucsa.392780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0M1_CUCSA7.1e-0957.81Uncharacterized protein OS=Cucumis sativus GN=Csa_4G101270 PE=4 SV=1[more]
B9SNP6_RICCO5.6e-0664.29Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1025190 PE=4 SV=1[more]
BLAST of Cucsa.392780 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G02120.11.7e-0660.61 hydroxyproline-rich glycoprotein family protein[more]
BLAST of Cucsa.392780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778691860|ref|XP_011653365.1|1.0e-0857.81PREDICTED: uncharacterized protein LOC105435203 [Cucumis sativus][more]
gi|659125937|ref|XP_008462927.1|1.3e-0859.38PREDICTED: uncharacterized protein LOC103501189 [Cucumis melo][more]
gi|255573378|ref|XP_002527615.1|8.1e-0664.29PREDICTED: uncharacterized protein LOC8289594 [Ricinus communis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.392780.1Cucsa.392780.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.392780CsaV3_5G014380Cucumber (Chinese Long) v3cgycucB594
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.392780Wild cucumber (PI 183967)cgycpiB577
Cucsa.392780Cucumber (Chinese Long) v2cgycuB548