Cucsa.388770 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.388770
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Single-stranded DNA-binding protein
Location	scaffold03967 : 1178863 .. 1183790 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACACAAGTCCAAGATAAGAGCCATGGTAATGGCGTTAGAGCAAACCCTAATTCTTTCATCTTCATTGTCATCAAAGAATTCTATCTTCTCCATCCCTAGAAACCAATTACCAATCTCTTCTTTCTTCCCTTTTCACTCCTATCTAAACCCTCCTAAACACCTCCGTTTCCCTGCTCCTTTCCCAAAATGCTCCGCTATGGAAAACTACACCAATTACTCTGCTGTAACCTACCCCAAACCTTCCCAAATTCCATGGAAGAAGGAGCTTAGTAACTCCGTCACTCTCATTGGGACCGTTGGTCTGCCTGTCGAGCTCAAGCACCTGCCATCTGGCAAGGATGTGGCCTGGACGCGACTTGCTGTTTGGAAGTCTTCTACTGAAACATCTTGGTACTAGTCTATTGTTTCATTTCGAAATGGGTTTTttATTGTTGCATTTCTATtGAAGATTGGATGAtAATAAGTTGAAGAATAGTTTTTTAGTTGTGGTTAAtAATATGGACATTTCTTAGGACTATGGTTATAGACTATATTTCTGTCTACGTCGAGTGCCATTTCTAAATTGTTaTCCCGATTTCGATAGGATGTGGAAACCATATGAATTCTTAAATGAGCCTTTGCTTTATGTAAGTGACGCCTTTCCGTGTTTTAACAAGTTTGGAAGGAAGTTACTTGAATGCCTCTGTTTGGGCGTTGAGAGTGAGGATGTGTGGAATTTGACACATTTTAGATTGTAAGGTTAAGTTTCAGAACCACACCATTTTTATTTTTACCAGACGAATTGTATCAATTCATTAGCCATAAGAGAAGCAtCCAAAATTATCTGTCTATTCCCAACAAGACCAAGCTTCTTAGGCGCAATGGTGGTACGCAGGGCCACTTTCGGACCATTGGATAAGACACAAGTAATGaTTTTATAGGCATATTTTAGAGTGTTATTCTCGGAAATTTATTCTACTTCTTTTCATATAAATTTGCAGATCATATCAACGCTTACATTGGTGCATAGAATCTTACATTTTCTCTGGAAAGGGTGACCCCAATAAATGTCTGACAGGAGGATTATGTTACACTTAGTATGCAGAGAGTCAAAATTTTAAGCTGCATCGGTAGTGAATTGGTAAAATTCTTTAAGTTCTAGCATTAACCTTGCTGCACATGACGCACCATGAAGAATAAAGCTAAGTGAACATACCTTTTTTTATAAATTTGCCATTCATATTGAGACCTCCCAAAGCTAGAATCCGAAAAAAGAACTTAATCTTTTCgCCgACCCTTCTATCTTCATGCTATACGACCTTCAAAAAGGCTTGATCAATGACAGCAGCTGCCGCTACCAATTTACCAAAAATGCAACaTTAGAGTTTTTGGTGTAGTTTGTCTTAATAATCAAGCACAAATTCTTCTATTCTCTATCAAGAGTACTCCAAAATCTCAATAATGGAGAAACTACTCAATCTCCCCATTATTTTAATTTCCTTCTAATGTTGAGATTCCACCTTCCTTTGTAGTTGTTCCTAGAATCTTTGACTTGTAACCATCAGAATTTGCAAAGGGTTGAAGTTTAGAAAAcAGTGAATGGGTAGGAAGTATGGATGATGGGACCAGGGAACGTTtACAGATCTAACCAAAGAATCCTCACCAACTTTAAATGTCAAGAAATAGAAGTAAAACCATGAGCATATTTTCACTTATtGGCACATAATTTGTCTTATAGCTTTCTACATATTTGTTCATTGGCAAAGCTCCTCAGTGACAGAACCTCCCTTCAAGAGAGCTAAGTGCATGAGCTCGTGCATAGGTACAATTTTTTAATAAATGGCCTTGCAaTTTAGGCTCAGTGGGCTATTATGCTCCAACACACTTTTGGGAAGATACACAAGTCTTTGTTGCGACCtGGAATTTCATTCAAGCCACGTAGTCCAAAGGAAAGCAAACACAaAGTTCAGCGAAAGAATCTTCTTTTCCTTCTTAAATGGATGACCATTGAAAAGGTGTGATAGGATGTCTCGATTATGTTGAGGGAGGGTTGTATGCCAACCAAAATCAGCCAGGATGAAATTCCAAAAACTTTGGTCCGGTTTCCGTGAAAAGACAGATGAGAATGGGTCTCTCCACCATTCTTGTACATATGATAGAAGCTTGTGGAGATACCAATCCATGGGCACTGAGTTTGTAGTTTGTCTTAAGCGTTGAGGAAACTGTGGCTCAATTCCCAAATGAGAAACTTAACTTTCTTAGGATAACTACTACCCCAAATAGATTGGTAAATATGCTTGAATGTTGCATCATCTTTATAGGTCAGTGAGTTTTAAACTGCAGAACTTTAAAACTTTGGTTTCTTGAGAGATACAGCGTGGCATTTCAAACTTGTTGCGTTTGCgTGTAATGACAATTAGAaGTGATTCAGATTAGGATTTTGCTCTTTCAGGATAGGTTTAACATTCTGGGATGAATTGGCACATATTGCTTCTCAGCACGTCCAGAAAGGCAACCAGATATATGTATCTGGTCGGCTGGTAGCAGATTTAGTTGAAGCTGATGATGGGAAACAGCAAACATACTACAAGGTTTTGATGTCCTTGTTCACACCGTTCCATGGTTTTCTATTCATCAAGAAGTAGATTCCAACACTTTCATATCTTTTGCAGGTAGTGGTTCAGCAACTGAATTTTATAGAAAGAAGCAACTCAACAGCACCCCATTACGACCAAGACTCTAATTCCATAATGGCAGGCATGGGATAATTCCCTAATTTAACATTATTGATTGACGCTTTACTTTGCTTCAAAATCTTATTATTTGGTGTCCTATCACATTATTCACAGGGAGAAAGCCCGGCAGTGGTGCTGTTGATAACACAGGGTCCACACAAGAACTATGGCAAGCATTCTTTGCTAATCCCGTTGACTGGTGGGACAATAGGAAGAATAAGGTACATGATTAATtCTCTTGCAATTTCTGGGATTCAACTATCTCGTTTTTGGATTCAAATGTTCTTAACATGGACCAAGTTGTCTTTCTGTTTTTATTCAAATTGATGCATGGAAAAACCTTGGGAACTTACAACGAACTGCATGATAGAATAGCATACATTTTATGTATGTTATATTTCCATTGCAGAGAGCAGGCCTCATAAATGGTTACATTTTCTTAtCTATTCGAGTGATACACCCCCAAGGGGGTGAGAATACGGAAAGAAAAAGCAAAATCAAGAACTTTGAGACAAATATAAGCAAAGTAATAGAGGTCAGCTCACAGAACAATTAATCTGTTAAAAAACAGTGGATTTATCCAATAATTTATGCCTTCTTTGAACCAATAACTTTTAGAGCTTGCAAATTGTGGTCGAAGTGAAGACTCTACAAACCACTCCAAAAGCAGCTGCAGCAACcGAAAACGAGACCAAAAAAaCATTAAAGAAATTTCATCTAGAACTTGCTGAGAAAAACGTTGTATGGATAATCGCGGGATTTAATATTGTAATATCAATGAGACACTACCATTTAACATATCATGAGGAGAGTAAGGTTATTTAACAGGAAAGGTACCGAGAGCAACAACAGCCACAAGACTAATCCTCAAGGAAAGtAACTGAGGCTGTAAAGATTTGTGGAAGGCCCAAAACAAGAGCAATCAAATTGAAACAGAGCAAACTAATAAAAACTTATCAAACGCTGAAAAAGGCAGAAGCtGCATCAAAGGAGTCAGTAcTAGGCATAGAAAAAGAAAACCTCCAAACTCAAACAAACTCAGATGCGCaCAGCCACGAAGACAAGTTGAGATCTCTCGGAGCCCATGTACTTGAAAACTTGAATTTTGATTTTTATCTCATAAACCTTAAGACCACAGACTCTGAAAAAGGAGGAAAAATTATAATCATCTTCAATGTGTTCTCATGAATGAAGGAGAGGAGGGGCGTCATATCAGACATTATTTGGAGGCCTAATGTCTTCTTGAAAGGGGTTACGTAGAACCCTATCAATAGCTTGTTTAGATGAAATTTTATCATTTCAATCGTCAATTAGAAAATTGAAATCCAATTCCTCACTCACAAGACTCCCTTTTGCTTGACCCATTTGTTGAAAAAATCACACTTTGACAGACCGTTATTTCAACTAAGAGGCTGAAATTGTGGAGGAAAACTGGGGTGAGTCGAGTTTGAGCCTACCTAGTCTCAGGAAATCTCTTTCATTTAGCTAAAAGCCTAAAAGAGTACTTAAGCTTCAAaTTTTTAAAGGTATGTAGAAGGTAAACCAAGTTAAAGCAACGCAGAGAAGTCACCAACAGCCTTTTTTGGCTATCATAGATCTAAATATTATTATTTTTTCTATGCATGAAATGGAATGGCAGGCCTCAATGATTTAAGAGAAAATCAAGGAAATAGTAGCCTCCTTTTGCAGGCCATAGACATTCCAAAAGTTACCTTTcGTTAGTATTTGTAGGTTTCCTTCACTGTATAGTTCACTTGAATCCTTGTTGAGATATAAGATGCACTCTTGAATGTTAATACTTTATTGGCATTTTGGTTCTGGTTGCAGAAGAACCCAAAATATCCTGATTTTAAACACAAGGACACTGGGGAAGCCTTGTGGGTTGAGGGCAGGTATAATCCACCTTGGGTGAAGTCTCAGCTTGCATTATTAGACATGAGAATGGGTTCTCTTGATGATCAGGAAGCCAAAATGGCCAACTTCGTAACTAGTTTTGATTTTCCaTCTTACTAAACTGACTTTGGATTGCTTTAAaTTGTTTCCAAGAGGGTGTAAACCAAAtATATTAGTAAGATTCTTTTGTGATGTCTGGCTcGTATAGTTTGTAATTTGGTGCATTGTATATTGGTTGTTAGTAATTCAAATATTTCGTCAGTCTCTAGGATCAGTGCCTTTTATGGAAGAAAAAAaaTACATGGAGTTCATCCCACA

mRNA sequence

AAAACACAAGTCCAAGATAAGAGCCATGGTAATGGCGTTAGAGCAAACCCTAATTCTTTCATCTTCATTGTCATCAAAGAATTCTATCTTCTCCATCCCTAGAAACCAATTACCAATCTCTTCTTTCTTCCCTTTTCACTCCTATCTAAACCCTCCTAAACACCTCCGTTTCCCTGCTCCTTTCCCAAAATGCTCCGCTATGGAAAACTACACCAATTACTCTGCTGTAACCTACCCCAAACCTTCCCAAATTCCATGGAAGAAGGAGCTTAGTAACTCCGTCACTCTCATTGGGACCGTTGGTCTGCCTGTCGAGCTCAAGCACCTGCCATCTGGCAAGGATGTGGCCTGGACGCGACTTGCTGTTTGGAAGTCTTCTACTGAAACATCTTGGATAGGTTTAACATTCTGGGATGAATTGGCACATATTGCTTCTCAGCACGTCCAGAAAGGCAACCAGATATATGTATCTGGTCGGCTGGTAGCAGATTTAGTTGAAGCTGATGATGGGAAACAGCAAACATACTACAAGGTAGTGGTTCAGCAACTGAATTTTATAGAAAGAAGCAACTCAACAGCACCCCATTACGACCAAGACTCTAATTCCATAATGGCAGGGAGAAAGCCCGGCAGTGGTGCTGTTGATAACACAGGGTCCACACAAGAACTATGGCAAGCATTCTTTGCTAATCCCGTTGACTGGTGGGACAATAGGAAGAATAAGAAGAACCCAAAATATCCTGATTTTAAACACAAGGACACTGGGGAAGCCTTGTGGGTTGAGGGCAGGTATAATCCACCTTGGGTGAAGTCTCAGCTTGCATTATTAGACATGAGAATGGGTTCTCTTGATGATCAGGAAGCCAAAATGGCCAACTTCGTAACTAGTTTTGATTTTCCATCTTACTAAACTGACTTTGGATTGCTTTAAATTGTTTCCAAGAGGGTGTAAACCAAATATATTAGTAAGATTCTTTTGTGATGTCTGGCTCGTATAGTTTGTAATTTGGTGCATTGTATATTGGTTGTTAGTAATTCAAATATTTCGTCAGTCTCTAGGATCAGTGCCTTTTATGGAAGAAAAAAAATACATGGAGTTCATCCCACA

Coding sequence (CDS)

ATGGTAATGGCGTTAGAGCAAACCCTAATTCTTTCATCTTCATTGTCATCAAAGAATTCTATCTTCTCCATCCCTAGAAACCAATTACCAATCTCTTCTTTCTTCCCTTTTCACTCCTATCTAAACCCTCCTAAACACCTCCGTTTCCCTGCTCCTTTCCCAAAATGCTCCGCTATGGAAAACTACACCAATTACTCTGCTGTAACCTACCCCAAACCTTCCCAAATTCCATGGAAGAAGGAGCTTAGTAACTCCGTCACTCTCATTGGGACCGTTGGTCTGCCTGTCGAGCTCAAGCACCTGCCATCTGGCAAGGATGTGGCCTGGACGCGACTTGCTGTTTGGAAGTCTTCTACTGAAACATCTTGGATAGGTTTAACATTCTGGGATGAATTGGCACATATTGCTTCTCAGCACGTCCAGAAAGGCAACCAGATATATGTATCTGGTCGGCTGGTAGCAGATTTAGTTGAAGCTGATGATGGGAAACAGCAAACATACTACAAGGTAGTGGTTCAGCAACTGAATTTTATAGAAAGAAGCAACTCAACAGCACCCCATTACGACCAAGACTCTAATTCCATAATGGCAGGGAGAAAGCCCGGCAGTGGTGCTGTTGATAACACAGGGTCCACACAAGAACTATGGCAAGCATTCTTTGCTAATCCCGTTGACTGGTGGGACAATAGGAAGAATAAGAAGAACCCAAAATATCCTGATTTTAAACACAAGGACACTGGGGAAGCCTTGTGGGTTGAGGGCAGGTATAATCCACCTTGGGTGAAGTCTCAGCTTGCATTATTAGACATGAGAATGGGTTCTCTTGATGATCAGGAAGCCAAAATGGCCAACTTCGTAACTAGTTTTGATTTTCCaTCTTACTAA

Protein sequence

MVMALEQTLILSSSLSSKNSIFSIPRNQLPISSFFPFHSYLNPPKHLRFPAPFPKCSAMENYTNYSAVTYPKPSQIPWKKELSNSVTLIGTVGLPVELKHLPSGKDVAWTRLAVWKSSTETSWIGLTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSNSTAPHYDQDSNSIMAGRKPGSGAVDNTGSTQELWQAFFANPVDWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPPWVKSQLALLDMRMGSLDDQEAKMANFVTSFDFPSY*

Homology

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BLAST of Cucsa.388770 vs. Swiss-Prot
Match: OSB1_ARATH (Protein OSB1, mitochondrial OS=Arabidopsis thaliana GN=OSB1 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.7e-26
Identity = 79/240 (32.92%), Postives = 121/240 (50.42%), Query Frame = 1


Query: 53  FPKC---SAMENYTNYSAVTYPKPSQIPWKKELSNSVTLIGTVGLPVELKHLPSGKDVAW 112
           FPK    S  E+   + A  + KP     K  L NSV+L+G V   +++ +    +   +
Sbjct: 22  FPKSRFFSDGESAVYHHARLFKKPLSTKLKFNLVNSVSLMGFVDRSIQVMNTGPDRFGVF 81

Query: 113 TRLAVWK--SSTETSWIGLTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADD--GKQQ 172
           T L V    +   +  I L  WD +A     H++  + I VSGRL +    + D      
Sbjct: 82  TILRVKDPLNPNRSFRISLRMWDAMARTCIAHLKLNDHILVSGRLESYSKSSSDVYSGLN 141

Query: 173 TYYKVVVQQLNFIERSNSTAPHYDQDSNSIMAGRKPGSGAVDNTGSTQE----LWQAFFA 232
             Y+V V ++N++    +  P +  DS      + P +   D+   +++    LWQ FF+
Sbjct: 142 LDYQVKVAEVNYV----AAPPSHVLDSQ---ISKNPKTKTEDDIEESKKDEIYLWQVFFS 201

Query: 233 NPVDWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPPWVKSQLALLDMRMGSLDDQEAK 282
           NP DWWDNR+NKKNPK PDFKHKDTGEALW+     P W+  +L L D +    D+++ +
Sbjct: 202 NPYDWWDNRRNKKNPKQPDFKHKDTGEALWLCSDL-PDWITRRLELFDQKNRFYDEEKTR 253

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BLAST of Cucsa.388770 vs. Swiss-Prot
Match: OSB2_ARATH (Protein OSB2, chloroplastic OS=Arabidopsis thaliana GN=OSB2 PE=1 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 9.9e-22
Identity = 70/209 (33.49%), Postives = 110/209 (52.63%), Query Frame = 1


Query: 71  PKPSQIPWKKELSNSVTLIGTVGLPVELKHLPSGKDVAWTRLAVWKSSTETS-WIGLTFW 130
           P+P++I ++ E++N V LIG V  PV+ +    GK  A T ++   +S  +  WI + F 
Sbjct: 86  PRPNEIAYESEVANWVNLIGFVDQPVQFEASSDGKFWAGTVISQRSASDSSGFWIPIIFE 145

Query: 131 DELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIE-RSNSTAPHY 190
            +LA  A+++V K +QI+VSG+L  D    +    Q   +V+VQ LNFI+  S S +P  
Sbjct: 146 GDLAKTAARYVSKDDQIHVSGKLFIDSPPPNMTYAQANVQVLVQNLNFIQPMSPSPSPFM 205

Query: 191 DQDSNSIMAG---RKPGSGAVDNT-GSTQELWQAFFANPVDWWDNRKNKKN----PKYPD 250
              S+        ++P     D       + W     NP +WWD+R+NK N    P++PD
Sbjct: 206 VMSSSEKEESGIKKQPARAKQDIVIDEASDSWNHLIENPKEWWDHRENKVNGLVKPRHPD 265

Query: 251 FKHKDTGEALWVEGRYNPPWVKSQLALLD 270
           FK KD+  +LW+     P WV  +L  L+
Sbjct: 266 FKSKDSSFSLWLNKA--PNWVLPKLEGLE 292

HSP 2 Score: 65.9 bits (159), Expect = 8.7e-10
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 1


Query: 213 QELWQAFFANPVDWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPPWVKSQLALLDMRM 272
           +E W+    NP  WWDNR +K+N K PDFKHK+TGEALW+    +P WV  +L  +  + 
Sbjct: 309 EESWKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEALWL--NESPTWVLPKLPPVKKKQ 368

Query: 273 GSL 276
            S+
Sbjct: 369 ESI 369

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BLAST of Cucsa.388770 vs. Swiss-Prot
Match: OSB3_ARATH (Protein OSB3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=OSB3 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.4e-20
Identity = 69/203 (33.99%), Postives = 101/203 (49.75%), Query Frame = 1


Query: 73  PSQIPWKKELSNSVTLIGTVGLPVELKHLPSGKDVAWTRLAVWKSSTETS-WIGLTFWDE 132
           P +I +K E+SN + LIG V  PV+      GK  A T ++    S  ++ WI + F  +
Sbjct: 71  PKKIEYKPEISNWINLIGFVEQPVQFGPCSDGKFWAGTVISQRSGSKSSNFWIPIIFEGD 130

Query: 133 LAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSNSTA-----P 192
           LA IA QHV+K ++I+VSG+L  D    +    Q+  +V+VQ LNF++ + ST      P
Sbjct: 131 LAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQSNVQVMVQNLNFVQAATSTTKTISPP 190

Query: 193 HYDQDSNSIMAGRKPGSGAVDNTGSTQELWQAFFANPVDWWDNRKNKKN----PKYPDFK 252
             +  S      R      +D    T   W+    NP +W D+R NK N    P +PDFK
Sbjct: 191 EKEVTSIKKKPARSKKVKVIDE--ETSNSWKHLIENPKEWLDHRGNKANGLVKPGHPDFK 250

Query: 253 HKDTGEALWVEGRYNPPWVKSQL 266
            K  G +LW+     P W   +L
Sbjct: 251 MKVGGLSLWLSTA--PDWALLKL 269

HSP 2 Score: 71.2 bits (173), Expect = 2.1e-11
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 1


Query: 213 QELWQAFFANPVDWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPPWVKSQL 266
           +E+W+    NP  WWDNR +K+NPK PDFKHK+TGEALW+    +P W  S+L
Sbjct: 377 EEIWKNLVENPSKWWDNRLDKRNPKGPDFKHKETGEALWIGD--SPTWALSKL 427

HSP 3 Score: 65.1 bits (157), Expect = 1.5e-09
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 1


Query: 213 QELWQAFFANPVDWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPPWVKSQL 266
           +E W+    NP  W DNR +K N KYPDFKHK+TGEALW+    +P WV S+L
Sbjct: 291 EESWKDLVQNPDKWLDNRSDKTNVKYPDFKHKETGEALWMTN--SPIWVLSKL 341

[Close]

BLAST of Cucsa.388770 vs. Swiss-Prot
Match: OSB4_ARATH (Protein OSB4, chloroplastic OS=Arabidopsis thaliana GN=OSB4 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.7e-19
Identity = 64/225 (28.44%), Postives = 115/225 (51.11%), Query Frame = 1


Query: 61  NYTNYSAVTYPKPSQIPWKKELSNSVTLIGTVGLPVELKHLPSGKDVAWTRLAVWKSSTE 120
           N    S+  +P+P ++P++ +++NS+ LIG V  PV+      GK  A T ++   SS  
Sbjct: 50  NRAEKSSEEWPRPMEVPYQPKIANSIDLIGYVHQPVQFDSTLDGKFWAGTVISHEPSSDS 109

Query: 121 TS--------WIGLTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTY----- 180
            S        WI + F  +LAH A+ +++K ++++++G+++ D++++     Q +     
Sbjct: 110 KSESDSSSNFWIPVLFEGDLAHTANSYLKKNDRVHITGQILGDVIQSGANSDQAHVQLFK 169

Query: 181 -------YKVVVQQLNFIERSNS---TAPHYDQD------SNSIMAGRKPGSGAVDNTGS 240
                  ++V+V+ L++IE S +     P  DQ+      S S+  GR+ G+        
Sbjct: 170 SFHGSFSHQVMVRDLHYIEGSKAMPKVLPTLDQNEGVLKHSASVQRGREFGT-------- 229

Query: 241 TQELWQAFFANPVDWWDNRKNKK----NPKYPDFKHKDTGEALWV 253
              LW      P +W D R+ K+    NPK+PDFK KD  +ALW+
Sbjct: 230 --NLWFDLVDKPNEWCDYREMKQNGSVNPKHPDFKKKDGSQALWL 264

HSP 2 Score: 59.3 bits (142), Expect = 8.2e-08
Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 1


Query: 213 QELWQAFFANPVDWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPPWVKSQL 266
           +E W+    N   WWDNR +K+ PK PDFKHK+TG  LW+    +P WV  +L
Sbjct: 293 EESWKDLVDNMNKWWDNRVDKRTPKSPDFKHKETGVGLWLSD--SPSWVLEKL 343

[Close]

BLAST of Cucsa.388770 vs. Swiss-Prot
Match: SSB_VIBCH (Single-stranded DNA-binding protein OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=ssb PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.2e-08
Identity = 33/104 (31.73%), Postives = 56/104 (53.85%), Query Frame = 1


Query: 84  NSVTLIGTVGLPVELKHLPSGKDVA---------WTRLAVWKSSTETSWIGLTFWDELAH 143
           N V LIG +G   E++++PSG  VA         W   A  +   +T W  +T + +LA 
Sbjct: 7   NKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAE 66

Query: 144 IASQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFI 179
           +A ++++KG+Q+Y+ G+L     +   G+ +   +VVVQ  N I
Sbjct: 67  VAGEYLRKGSQVYIEGQLQTRKWQDQSGQDRYSTEVVVQGYNGI 110

[Close]

BLAST of Cucsa.388770 vs. TrEMBL
Match: A0A0A0K4W2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G378540 PE=4 SV=1)

HSP 1 Score: 611.7 bits (1576), Expect = 4.7e-172
Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 1


Query: 1   MVMALEQTLILSSSLSSKNSIFSIPRNQLPISSFFPFHSYLNPPKHLRFPAPFPKCSAME 60
           MVMALEQTLILSSSLSSKNSIFSIPRNQLPISSFFPFHSYLNPPKHLRFPAPFPKCSAME
Sbjct: 1   MVMALEQTLILSSSLSSKNSIFSIPRNQLPISSFFPFHSYLNPPKHLRFPAPFPKCSAME 60

Query: 61  NYTNYSAVTYPKPSQIPWKKELSNSVTLIGTVGLPVELKHLPSGKDVAWTRLAVWKSSTE 120
           NYTNYSAVTYPKPSQIPWKKELSNSVTLIGTVGLPVELKHLPSGKDVAWTRLAVWKSSTE
Sbjct: 61  NYTNYSAVTYPKPSQIPWKKELSNSVTLIGTVGLPVELKHLPSGKDVAWTRLAVWKSSTE 120

Query: 121 TSWIGLTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIER 180
           TSWIGLTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIER
Sbjct: 121 TSWIGLTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIER 180

Query: 181 SNSTAPHYDQDSNSIMAGRKPGSGAVDNTGSTQELWQAFFANPVDWWDNRKNKKNPKYPD 240
           SNSTAPHYDQDSNSIMAGRKPGSGAVDNTGSTQELWQAFFANPVDWWDNRKNKKNPKYPD
Sbjct: 181 SNSTAPHYDQDSNSIMAGRKPGSGAVDNTGSTQELWQAFFANPVDWWDNRKNKKNPKYPD 240

Query: 241 FKHKDTGEALWVEGRYNPPWVKSQLALLDMRMGSLDDQEAKMANFVTSFDFPSY 295
           FKHKDTGEALWVEGRYNPPWVKSQLALLDMRMGSLDDQEAKMANFVTSFDFPSY
Sbjct: 241 FKHKDTGEALWVEGRYNPPWVKSQLALLDMRMGSLDDQEAKMANFVTSFDFPSY 294

[Close]

BLAST of Cucsa.388770 vs. TrEMBL
Match: D7SQJ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0141g00260 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 8.0e-95
Identity = 178/260 (68.46%), Postives = 206/260 (79.23%), Query Frame = 1


Query: 36  PFHSYLNPPKHLRFPAPFPKCSAMENYTN---YSAVTYPKPSQIPWKKELSNSVTLIGTV 95
           PF S L  PK         +CS + NY N     AV+YP+PS++PWKKEL NSV+LIG V
Sbjct: 34  PFFSSLPQPKTQL------RCSIICNYNNDHHNQAVSYPRPSEVPWKKELCNSVSLIGIV 93

Query: 96  GLPVELKHLPSGKDVAWTRLAVWKSSTETSWIGLTFWDELAHIASQHVQKGNQIYVSGRL 155
           G PVE+KHL SGK +AWTRLAV KS+++T+WI LTFWDELAH+ASQHV+KG QIYVSGRL
Sbjct: 94  GAPVEIKHLSSGKVLAWTRLAVRKSASDTTWINLTFWDELAHVASQHVEKGQQIYVSGRL 153

Query: 156 VADLVEADDGKQQTYYKVVVQQLNFIERSNSTAPHYDQDSNSIMAGRKPGSGAVDNTGST 215
           V+D VE D+GKQQTYYKVVVQQLNF+ERS S+A     +SNS+ AGRK GS A ++TGS 
Sbjct: 154 VSDTVENDEGKQQTYYKVVVQQLNFVERSFSSA----DESNSLAAGRKLGSPATNSTGSI 213

Query: 216 QELWQAFFANPVDWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPPWVKSQLALLDMRM 275
           +ELWQAFFANPVDWWDNRK KKNPKYPDFKHKDTGEALWVEGRYNP WVKSQLA+LD RM
Sbjct: 214 EELWQAFFANPVDWWDNRKTKKNPKYPDFKHKDTGEALWVEGRYNPSWVKSQLAILDSRM 273

Query: 276 GSLDDQEAKM-ANFVTSFDF 292
            S  DQ+A+M  N +   DF
Sbjct: 274 ESFRDQDARMHVNLMAGDDF 283

[Close]

BLAST of Cucsa.388770 vs. TrEMBL
Match: V4TA61_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021384mg PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 1.4e-94
Identity = 180/295 (61.02%), Postives = 223/295 (75.59%), Query Frame = 1


Query: 3   MALEQTLILSSSLSSKNSIFSI------PRN---------QLPISSFFPFHSYLNPPKHL 62
           MALEQTL+     S++N +FS+      P N         Q P++    F S+  P K L
Sbjct: 1   MALEQTLV-----STRNLVFSVSVRRKSPNNIQIPALSPSQNPLTKQAWFISHRQPLK-L 60

Query: 63  RFPAPFPKCSAMENYTNYSA-VTYPKPSQIPWKKELSNSVTLIGTVGLPVELKHLPSGKD 122
           R      +CS       YS+  +YPKP++IPW KEL+N+V LIG VG P+E KHLPSGK 
Sbjct: 61  RL-----RCSVDYKDHQYSSQASYPKPAEIPWNKELTNTVHLIGVVGTPIETKHLPSGKV 120

Query: 123 VAWTRLAVWKSSTETSWIGLTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQT 182
           +AWTRLAV KS+T+TSWI LTFWDELAH+ASQHV+KG QIY+SGRLV+D+VE+DDG+QQT
Sbjct: 121 LAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVESDDGQQQT 180

Query: 183 YYKVVVQQLNFIERSNSTAPHYDQDSNSIMAGRKPGSGAVDNTGSTQELWQAFFANPVDW 242
           YYKVVVQQLNF+ERS+ +   YD +SN + AG+K  + + +N GST+ELWQAFFA+P +W
Sbjct: 181 YYKVVVQQLNFVERSSPSMSSYDSESNFMTAGKKYANSSGNNMGSTEELWQAFFASPNEW 240

Query: 243 WDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPPWVKSQLALLDMRMGSLDDQEAK 282
           WDNRKNKKNPKYPDFKHKDTGEALWVEGRYNP WVKSQLA+LD RMGSL D++++
Sbjct: 241 WDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPGWVKSQLAILDTRMGSLHDEDSR 284

[Close]

BLAST of Cucsa.388770 vs. TrEMBL
Match: M5VXM6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009313mg PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 5.7e-93
Identity = 179/305 (58.69%), Postives = 222/305 (72.79%), Query Frame = 1


Query: 3   MALEQTLILSSSLSSKNSIFSIPRNQLPISSFFPFHSYLNPPKHLRFPAPF--PKCS--- 62
           MALE+ L  ++S     +  + P+    + SFFP  +  +   HL F       KCS   
Sbjct: 1   MALERALPAATS----TTFLTNPK----VPSFFPTTTSNHNHSHLAFARRRFNIKCSMDY 60

Query: 63  AMENYTNYSA------VTYPKPSQIPWKKELSNSVTLIGTVGLPVELKHLPSGKDVAWTR 122
           + + Y N  +      + YP+P+++ WKKEL N+V LIG VGLP+E+KHLPSGK VAWTR
Sbjct: 61  SRDQYNNNGSSSIQVPIAYPRPAEVQWKKELCNTVHLIGVVGLPIEIKHLPSGKVVAWTR 120

Query: 123 LAVWKSSTETSWIGLTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVV 182
           LAV KSS++TSWI LTFWDE+AH+A QHV+KGNQIYV GRL+ D VE ++GKQQTYYKVV
Sbjct: 121 LAVKKSSSDTSWINLTFWDEMAHVAFQHVEKGNQIYVIGRLITDSVETNEGKQQTYYKVV 180

Query: 183 VQQLNFIERSNSTAPHYDQDSNSIMAGRKPGSGAVDN-TGSTQELWQAFFANPVDWWDNR 242
           VQQLNF+E+  S+    D DS+SI AG+  G+GA  N T +TQELWQAFFANPVDWWDNR
Sbjct: 181 VQQLNFVEKGFSSLVLNDHDSDSITAGKNTGNGAAKNSTETTQELWQAFFANPVDWWDNR 240

Query: 243 KNKKNPKYPDFKHKDTGEALWVEGRYNPPWVKSQLALLDMRMGSLDDQEAKM-ANFVTSF 295
           K K+NPKYPDFKHKDTGEALW+EGRYNPPWVKSQLA+LD RMG+L+DQ+ KM +N     
Sbjct: 241 KTKRNPKYPDFKHKDTGEALWIEGRYNPPWVKSQLAILDSRMGTLNDQDLKMHSNIFAGD 297

[Close]

BLAST of Cucsa.388770 vs. TrEMBL
Match: A0A067FQW6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022388mg PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 7.5e-93
Identity = 174/289 (60.21%), Postives = 216/289 (74.74%), Query Frame = 1


Query: 3   MALEQTLILSSSLSSKNSIFSIPRNQLPISSFFPFHSYLNP---------PKHLRFPAPF 62
           MALEQTL+ + +L    S+     N + I S  P  + L           P  LR     
Sbjct: 1   MALEQTLVSTRNLVFSVSVRRKSPNNIQIPSLSPSQNPLTKQAWFISHRQPLKLRL---- 60

Query: 63  PKCSA-MENYTNYSAVTYPKPSQIPWKKELSNSVTLIGTVGLPVELKHLPSGKDVAWTRL 122
            +CS   +++   S V+YPKP +IPW KEL+N+V LIG VG P+E KHLPSGK +AWTRL
Sbjct: 61  -RCSVDCKDHQYSSQVSYPKPPEIPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRL 120

Query: 123 AVWKSSTETSWIGLTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVV 182
           AV KS+T+TSWI LTFWDELAH+ASQHV+KG QIY+SGRLV+D+VE+ DG+QQTYYKVVV
Sbjct: 121 AVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVV 180

Query: 183 QQLNFIERSNSTAPHYDQDSNSIMAGRKPGSGAVDNTGSTQELWQAFFANPVDWWDNRKN 242
           QQLNF+ERS+ +   YD +SN + AG+K  + + +N  ST+ELWQAFFA+P +WWDNRKN
Sbjct: 181 QQLNFVERSSPSMSSYDSESNFMTAGKKYANSSGNNMCSTEELWQAFFASPNEWWDNRKN 240

Query: 243 KKNPKYPDFKHKDTGEALWVEGRYNPPWVKSQLALLDMRMGSLDDQEAK 282
           KKNPKYPDFKHKDTGEALWVEGRYNP WVKSQLA+LD RMGSL D++++
Sbjct: 241 KKNPKYPDFKHKDTGEALWVEGRYNPGWVKSQLAILDTRMGSLHDEDSR 284

[Close]

BLAST of Cucsa.388770 vs. TAIR10
Match: AT1G47720.1 (AT1G47720.1 Primosome PriB/single-strand DNA-binding)

HSP 1 Score: 119.0 bits (297), Expect = 4.9e-27
Identity = 79/240 (32.92%), Postives = 121/240 (50.42%), Query Frame = 1


Query: 53  FPKC---SAMENYTNYSAVTYPKPSQIPWKKELSNSVTLIGTVGLPVELKHLPSGKDVAW 112
           FPK    S  E+   + A  + KP     K  L NSV+L+G V   +++ +    +   +
Sbjct: 22  FPKSRFFSDGESAVYHHARLFKKPLSTKLKFNLVNSVSLMGFVDRSIQVMNTGPDRFGVF 81

Query: 113 TRLAVWK--SSTETSWIGLTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADD--GKQQ 172
           T L V    +   +  I L  WD +A     H++  + I VSGRL +    + D      
Sbjct: 82  TILRVKDPLNPNRSFRISLRMWDAMARTCIAHLKLNDHILVSGRLESYSKSSSDVYSGLN 141

Query: 173 TYYKVVVQQLNFIERSNSTAPHYDQDSNSIMAGRKPGSGAVDNTGSTQE----LWQAFFA 232
             Y+V V ++N++    +  P +  DS      + P +   D+   +++    LWQ FF+
Sbjct: 142 LDYQVKVAEVNYV----AAPPSHVLDSQ---ISKNPKTKTEDDIEESKKDEIYLWQVFFS 201

Query: 233 NPVDWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPPWVKSQLALLDMRMGSLDDQEAK 282
           NP DWWDNR+NKKNPK PDFKHKDTGEALW+     P W+  +L L D +    D+++ +
Sbjct: 202 NPYDWWDNRRNKKNPKQPDFKHKDTGEALWLCSDL-PDWITRRLELFDQKNRFYDEEKTR 253

[Close]

BLAST of Cucsa.388770 vs. TAIR10
Match: AT4G20010.1 (AT4G20010.1 plastid transcriptionally active 9)

HSP 1 Score: 105.5 bits (262), Expect = 5.6e-23
Identity = 70/209 (33.49%), Postives = 110/209 (52.63%), Query Frame = 1


Query: 71  PKPSQIPWKKELSNSVTLIGTVGLPVELKHLPSGKDVAWTRLAVWKSSTETS-WIGLTFW 130
           P+P++I ++ E++N V LIG V  PV+ +    GK  A T ++   +S  +  WI + F 
Sbjct: 86  PRPNEIAYESEVANWVNLIGFVDQPVQFEASSDGKFWAGTVISQRSASDSSGFWIPIIFE 145

Query: 131 DELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIE-RSNSTAPHY 190
            +LA  A+++V K +QI+VSG+L  D    +    Q   +V+VQ LNFI+  S S +P  
Sbjct: 146 GDLAKTAARYVSKDDQIHVSGKLFIDSPPPNMTYAQANVQVLVQNLNFIQPMSPSPSPFM 205

Query: 191 DQDSNSIMAG---RKPGSGAVDNT-GSTQELWQAFFANPVDWWDNRKNKKN----PKYPD 250
              S+        ++P     D       + W     NP +WWD+R+NK N    P++PD
Sbjct: 206 VMSSSEKEESGIKKQPARAKQDIVIDEASDSWNHLIENPKEWWDHRENKVNGLVKPRHPD 265

Query: 251 FKHKDTGEALWVEGRYNPPWVKSQLALLD 270
           FK KD+  +LW+     P WV  +L  L+
Sbjct: 266 FKSKDSSFSLWLNKA--PNWVLPKLEGLE 292

HSP 2 Score: 65.9 bits (159), Expect = 4.9e-11
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 1


Query: 213 QELWQAFFANPVDWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPPWVKSQLALLDMRM 272
           +E W+    NP  WWDNR +K+N K PDFKHK+TGEALW+    +P WV  +L  +  + 
Sbjct: 309 EESWKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEALWL--NESPTWVLPKLPPVKKKQ 368

Query: 273 GSL 276
            S+
Sbjct: 369 ESI 369

[Close]

BLAST of Cucsa.388770 vs. TAIR10
Match: AT5G44785.2 (AT5G44785.2 organellar single-stranded DNA binding protein 3)

HSP 1 Score: 99.8 bits (247), Expect = 3.1e-21
Identity = 69/203 (33.99%), Postives = 101/203 (49.75%), Query Frame = 1


Query: 73  PSQIPWKKELSNSVTLIGTVGLPVELKHLPSGKDVAWTRLAVWKSSTETS-WIGLTFWDE 132
           P +I +K E+SN + LIG V  PV+      GK  A T ++    S  ++ WI + F  +
Sbjct: 71  PKKIEYKPEISNWINLIGFVEQPVQFGPCSDGKFWAGTVISQRSGSKSSNFWIPIIFEGD 130

Query: 133 LAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSNSTA-----P 192
           LA IA QHV+K ++I+VSG+L  D    +    Q+  +V+VQ LNF++ + ST      P
Sbjct: 131 LAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQSNVQVMVQNLNFVQAATSTTKTISPP 190

Query: 193 HYDQDSNSIMAGRKPGSGAVDNTGSTQELWQAFFANPVDWWDNRKNKKN----PKYPDFK 252
             +  S      R      +D    T   W+    NP +W D+R NK N    P +PDFK
Sbjct: 191 EKEVTSIKKKPARSKKVKVIDE--ETSNSWKHLIENPKEWLDHRGNKANGLVKPGHPDFK 250

Query: 253 HKDTGEALWVEGRYNPPWVKSQL 266
            K  G +LW+     P W   +L
Sbjct: 251 MKVGGLSLWLSTA--PDWALLKL 269

HSP 2 Score: 71.2 bits (173), Expect = 1.2e-12
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 1


Query: 213 QELWQAFFANPVDWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPPWVKSQL 266
           +E+W+    NP  WWDNR +K+NPK PDFKHK+TGEALW+    +P W  S+L
Sbjct: 379 EEIWKNLVENPSKWWDNRLDKRNPKGPDFKHKETGEALWIGD--SPTWALSKL 429

HSP 3 Score: 65.1 bits (157), Expect = 8.4e-11
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 1


Query: 213 QELWQAFFANPVDWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPPWVKSQL 266
           +E W+    NP  W DNR +K N KYPDFKHK+TGEALW+    +P WV S+L
Sbjct: 293 EESWKDLVQNPDKWLDNRSDKTNVKYPDFKHKETGEALWMTN--SPIWVLSKL 343

[Close]

BLAST of Cucsa.388770 vs. TAIR10
Match: AT1G31010.1 (AT1G31010.1 organellar single-stranded DNA binding protein 4)

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-20
Identity = 64/225 (28.44%), Postives = 115/225 (51.11%), Query Frame = 1


Query: 61  NYTNYSAVTYPKPSQIPWKKELSNSVTLIGTVGLPVELKHLPSGKDVAWTRLAVWKSSTE 120
           N    S+  +P+P ++P++ +++NS+ LIG V  PV+      GK  A T ++   SS  
Sbjct: 50  NRAEKSSEEWPRPMEVPYQPKIANSIDLIGYVHQPVQFDSTLDGKFWAGTVISHEPSSDS 109

Query: 121 TS--------WIGLTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTY----- 180
            S        WI + F  +LAH A+ +++K ++++++G+++ D++++     Q +     
Sbjct: 110 KSESDSSSNFWIPVLFEGDLAHTANSYLKKNDRVHITGQILGDVIQSGANSDQAHVQLFK 169

Query: 181 -------YKVVVQQLNFIERSNS---TAPHYDQD------SNSIMAGRKPGSGAVDNTGS 240
                  ++V+V+ L++IE S +     P  DQ+      S S+  GR+ G+        
Sbjct: 170 SFHGSFSHQVMVRDLHYIEGSKAMPKVLPTLDQNEGVLKHSASVQRGREFGT-------- 229

Query: 241 TQELWQAFFANPVDWWDNRKNKK----NPKYPDFKHKDTGEALWV 253
              LW      P +W D R+ K+    NPK+PDFK KD  +ALW+
Sbjct: 230 --NLWFDLVDKPNEWCDYREMKQNGSVNPKHPDFKKKDGSQALWL 264

HSP 2 Score: 59.3 bits (142), Expect = 4.6e-09
Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 1


Query: 213 QELWQAFFANPVDWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPPWVKSQL 266
           +E W+    N   WWDNR +K+ PK PDFKHK+TG  LW+    +P WV  +L
Sbjct: 293 EESWKDLVDNMNKWWDNRVDKRTPKSPDFKHKETGVGLWLSD--SPSWVLEKL 343

[Close]

BLAST of Cucsa.388770 vs. NCBI nr
Match: gi|449458446|ref|XP_004146958.1| (PREDICTED: protein OSB2, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 611.7 bits (1576), Expect = 6.8e-172
Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 1


Query: 1   MVMALEQTLILSSSLSSKNSIFSIPRNQLPISSFFPFHSYLNPPKHLRFPAPFPKCSAME 60
           MVMALEQTLILSSSLSSKNSIFSIPRNQLPISSFFPFHSYLNPPKHLRFPAPFPKCSAME
Sbjct: 1   MVMALEQTLILSSSLSSKNSIFSIPRNQLPISSFFPFHSYLNPPKHLRFPAPFPKCSAME 60

Query: 61  NYTNYSAVTYPKPSQIPWKKELSNSVTLIGTVGLPVELKHLPSGKDVAWTRLAVWKSSTE 120
           NYTNYSAVTYPKPSQIPWKKELSNSVTLIGTVGLPVELKHLPSGKDVAWTRLAVWKSSTE
Sbjct: 61  NYTNYSAVTYPKPSQIPWKKELSNSVTLIGTVGLPVELKHLPSGKDVAWTRLAVWKSSTE 120

Query: 121 TSWIGLTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIER 180
           TSWIGLTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIER
Sbjct: 121 TSWIGLTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIER 180

Query: 181 SNSTAPHYDQDSNSIMAGRKPGSGAVDNTGSTQELWQAFFANPVDWWDNRKNKKNPKYPD 240
           SNSTAPHYDQDSNSIMAGRKPGSGAVDNTGSTQELWQAFFANPVDWWDNRKNKKNPKYPD
Sbjct: 181 SNSTAPHYDQDSNSIMAGRKPGSGAVDNTGSTQELWQAFFANPVDWWDNRKNKKNPKYPD 240

Query: 241 FKHKDTGEALWVEGRYNPPWVKSQLALLDMRMGSLDDQEAKMANFVTSFDFPSY 295
           FKHKDTGEALWVEGRYNPPWVKSQLALLDMRMGSLDDQEAKMANFVTSFDFPSY
Sbjct: 241 FKHKDTGEALWVEGRYNPPWVKSQLALLDMRMGSLDDQEAKMANFVTSFDFPSY 294

[Close]

BLAST of Cucsa.388770 vs. NCBI nr
Match: gi|659100792|ref|XP_008451268.1| (PREDICTED: protein OSB2, chloroplastic-like [Cucumis melo])

HSP 1 Score: 577.8 bits (1488), Expect = 1.1e-161
Identity = 277/294 (94.22%), Postives = 281/294 (95.58%), Query Frame = 1


Query: 1   MVMALEQTLILSSSLSSKNSIFSIPRNQLPISSFFPFHSYLNPPKHLRFPAPFPKCSAME 60
           M +ALEQTL LSSS SSKNSIFSIPRNQL ISSFFPFHSYLNPPKHLRF   FPKCSAME
Sbjct: 3   MALALEQTLTLSSSFSSKNSIFSIPRNQLRISSFFPFHSYLNPPKHLRFATRFPKCSAME 62

Query: 61  NYTNYSAVTYPKPSQIPWKKELSNSVTLIGTVGLPVELKHLPSGKDVAWTRLAVWKSSTE 120
           NYTNYSAVTYPKPS+IPWKKELSNSVTLIGTVGLPVELKHLPSGKDVAWTRLAVWKSSTE
Sbjct: 63  NYTNYSAVTYPKPSEIPWKKELSNSVTLIGTVGLPVELKHLPSGKDVAWTRLAVWKSSTE 122

Query: 121 TSWIGLTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIER 180
           TSWI LTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIER
Sbjct: 123 TSWISLTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIER 182

Query: 181 SNSTAPHYDQDSNSIMAGRKPGSGAVDNTGSTQELWQAFFANPVDWWDNRKNKKNPKYPD 240
           SNSTAPHYDQDSNSIMAGRKP SGAVDNT STQELWQAFFANPVDWWDNRKNKKNPKYPD
Sbjct: 183 SNSTAPHYDQDSNSIMAGRKPSSGAVDNTASTQELWQAFFANPVDWWDNRKNKKNPKYPD 242

Query: 241 FKHKDTGEALWVEGRYNPPWVKSQLALLDMRMGSLDDQEAKMANFVTSFDFPSY 295
           FKHKDTGEALWVEGRYNPPWVKSQLALLDMRM SLDDQE KM NFV++FDFPSY
Sbjct: 243 FKHKDTGEALWVEGRYNPPWVKSQLALLDMRMSSLDDQEVKMTNFVSNFDFPSY 296

[Close]

BLAST of Cucsa.388770 vs. NCBI nr
Match: gi|1009147549|ref|XP_015891471.1| (PREDICTED: protein OSB1, mitochondrial-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 355.9 bits (912), Expect = 6.7e-95
Identity = 177/298 (59.40%), Postives = 226/298 (75.84%), Query Frame = 1


Query: 3   MALEQTLILSSSLSSKNSIFSIPRNQLPISSFFPFHSYLNPPKHLRFPAPFPKCSAMENY 62
           MALE+  +  ++ S+K+S+  +P+N L  +S  P  S  +    + F     KCS   N 
Sbjct: 1   MALERAAV--AACSTKSSLLFVPQNPLT-NSPIPSVSSTSKTNRISFAQRQLKCSVEYNR 60

Query: 63  TNYS-------AVTYPKPSQIPWKKELSNSVTLIGTVGLPVELKHLPS-GKDVAWTRLAV 122
            +Y+       AV YPKP++IPWKKEL N+V LIG VG+PVE++H+PS GK +AWTRLAV
Sbjct: 61  DHYNDNNQGAVAVAYPKPAEIPWKKELCNTVHLIGVVGVPVEIRHIPSSGKVLAWTRLAV 120

Query: 123 WKSSTETSWIGLTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQ 182
            KS T TSWI LTFWDELAH+A +HVQKG QIYVSGRLV+D VE D+GKQQTYYKVVVQQ
Sbjct: 121 KKSPTNTSWISLTFWDELAHVAFEHVQKGQQIYVSGRLVSDTVENDEGKQQTYYKVVVQQ 180

Query: 183 LNFIERSNSTAPHYDQDSNSIMAGRKPGSGAVDNTGSTQELWQAFFANPVDWWDNRKNKK 242
           LNF+E++ S+   YD+DS+++ AGRK G+ A + + +T+ELWQAFFANP++WWDNR+ K+
Sbjct: 181 LNFVEKNFSSVASYDRDSDTLTAGRKLGNNAGNGSDTTEELWQAFFANPLEWWDNRRTKR 240

Query: 243 NPKYPDFKHKDTGEALWVEGRYNPPWVKSQLALLDMRMGSLDDQEAKM-ANFVTSFDF 292
           NPKYPDFKHKDTGEALW+EGRYNPPWVK+QLA+LD RMGS +DQ+ +M AN V    F
Sbjct: 241 NPKYPDFKHKDTGEALWIEGRYNPPWVKAQLAILDARMGSFNDQDNRMHANLVPGDSF 295

[Close]

BLAST of Cucsa.388770 vs. NCBI nr
Match: gi|731394705|ref|XP_010651930.1| (PREDICTED: protein OSB2, chloroplastic [Vitis vinifera])

HSP 1 Score: 355.1 bits (910), Expect = 1.1e-94
Identity = 178/260 (68.46%), Postives = 206/260 (79.23%), Query Frame = 1


Query: 36  PFHSYLNPPKHLRFPAPFPKCSAMENYTN---YSAVTYPKPSQIPWKKELSNSVTLIGTV 95
           PF S L  PK         +CS + NY N     AV+YP+PS++PWKKEL NSV+LIG V
Sbjct: 34  PFFSSLPQPKTQL------RCSIICNYNNDHHNQAVSYPRPSEVPWKKELCNSVSLIGIV 93

Query: 96  GLPVELKHLPSGKDVAWTRLAVWKSSTETSWIGLTFWDELAHIASQHVQKGNQIYVSGRL 155
           G PVE+KHL SGK +AWTRLAV KS+++T+WI LTFWDELAH+ASQHV+KG QIYVSGRL
Sbjct: 94  GAPVEIKHLSSGKVLAWTRLAVRKSASDTTWINLTFWDELAHVASQHVEKGQQIYVSGRL 153

Query: 156 VADLVEADDGKQQTYYKVVVQQLNFIERSNSTAPHYDQDSNSIMAGRKPGSGAVDNTGST 215
           V+D VE D+GKQQTYYKVVVQQLNF+ERS S+A     +SNS+ AGRK GS A ++TGS 
Sbjct: 154 VSDTVENDEGKQQTYYKVVVQQLNFVERSFSSA----DESNSLAAGRKLGSPATNSTGSI 213

Query: 216 QELWQAFFANPVDWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPPWVKSQLALLDMRM 275
           +ELWQAFFANPVDWWDNRK KKNPKYPDFKHKDTGEALWVEGRYNP WVKSQLA+LD RM
Sbjct: 214 EELWQAFFANPVDWWDNRKTKKNPKYPDFKHKDTGEALWVEGRYNPSWVKSQLAILDSRM 273

Query: 276 GSLDDQEAKM-ANFVTSFDF 292
            S  DQ+A+M  N +   DF
Sbjct: 274 ESFRDQDARMHVNLMAGDDF 283

[Close]

BLAST of Cucsa.388770 vs. NCBI nr
Match: gi|567902870|ref|XP_006443923.1| (hypothetical protein CICLE_v10021384mg [Citrus clementina])

HSP 1 Score: 354.4 bits (908), Expect = 2.0e-94
Identity = 180/295 (61.02%), Postives = 223/295 (75.59%), Query Frame = 1


Query: 3   MALEQTLILSSSLSSKNSIFSI------PRN---------QLPISSFFPFHSYLNPPKHL 62
           MALEQTL+     S++N +FS+      P N         Q P++    F S+  P K L
Sbjct: 1   MALEQTLV-----STRNLVFSVSVRRKSPNNIQIPALSPSQNPLTKQAWFISHRQPLK-L 60

Query: 63  RFPAPFPKCSAMENYTNYSA-VTYPKPSQIPWKKELSNSVTLIGTVGLPVELKHLPSGKD 122
           R      +CS       YS+  +YPKP++IPW KEL+N+V LIG VG P+E KHLPSGK 
Sbjct: 61  RL-----RCSVDYKDHQYSSQASYPKPAEIPWNKELTNTVHLIGVVGTPIETKHLPSGKV 120

Query: 123 VAWTRLAVWKSSTETSWIGLTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQT 182
           +AWTRLAV KS+T+TSWI LTFWDELAH+ASQHV+KG QIY+SGRLV+D+VE+DDG+QQT
Sbjct: 121 LAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVESDDGQQQT 180

Query: 183 YYKVVVQQLNFIERSNSTAPHYDQDSNSIMAGRKPGSGAVDNTGSTQELWQAFFANPVDW 242
           YYKVVVQQLNF+ERS+ +   YD +SN + AG+K  + + +N GST+ELWQAFFA+P +W
Sbjct: 181 YYKVVVQQLNFVERSSPSMSSYDSESNFMTAGKKYANSSGNNMGSTEELWQAFFASPNEW 240

Query: 243 WDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPPWVKSQLALLDMRMGSLDDQEAK 282
           WDNRKNKKNPKYPDFKHKDTGEALWVEGRYNP WVKSQLA+LD RMGSL D++++
Sbjct: 241 WDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPGWVKSQLAILDTRMGSLHDEDSR 284

The following BLAST results are available for this feature:

BLAST of Cucsa.388770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
OSB1_ARATH	8.7e-26	32.92	Protein OSB1, mitochondrial OS=Arabidopsis thaliana GN=OSB1 PE=1 SV=1	[more]
OSB2_ARATH	9.9e-22	33.49	Protein OSB2, chloroplastic OS=Arabidopsis thaliana GN=OSB2 PE=1 SV=2	[more]
OSB3_ARATH	5.4e-20	33.99	Protein OSB3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=OSB3 PE=2 S...	[more]
OSB4_ARATH	2.7e-19	28.44	Protein OSB4, chloroplastic OS=Arabidopsis thaliana GN=OSB4 PE=2 SV=1	[more]
SSB_VIBCH	6.2e-08	31.73	Single-stranded DNA-binding protein OS=Vibrio cholerae serotype O1 (strain ATCC ...	[more]

BLAST of Cucsa.388770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4W2_CUCSA	4.7e-172	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G378540 PE=4 SV=1	[more]
D7SQJ9_VITVI	8.0e-95	68.46	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0141g00260 PE=4 SV=...	[more]
V4TA61_9ROSI	1.4e-94	61.02	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021384mg PE=4 SV=1	[more]
M5VXM6_PRUPE	5.7e-93	58.69	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009313mg PE=4 SV=1	[more]
A0A067FQW6_CITSI	7.5e-93	60.21	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022388mg PE=4 SV=1	[more]

BLAST of Cucsa.388770 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G47720.1	4.9e-27	32.92	Primosome PriB/single-strand DNA-binding	[more]
AT4G20010.1	5.6e-23	33.49	plastid transcriptionally active 9	[more]
AT5G44785.2	3.1e-21	33.99	organellar single-stranded DNA binding protein 3	[more]
AT1G31010.1	1.5e-20	28.44	organellar single-stranded DNA binding protein 4	[more]

BLAST of Cucsa.388770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458446\|ref\|XP_004146958.1\|	6.8e-172	100.00	PREDICTED: protein OSB2, chloroplastic-like [Cucumis sativus]	[more]
gi\|659100792\|ref\|XP_008451268.1\|	1.1e-161	94.22	PREDICTED: protein OSB2, chloroplastic-like [Cucumis melo]	[more]
gi\|1009147549\|ref\|XP_015891471.1\|	6.7e-95	59.40	PREDICTED: protein OSB1, mitochondrial-like isoform X1 [Ziziphus jujuba]	[more]
gi\|731394705\|ref\|XP_010651930.1\|	1.1e-94	68.46	PREDICTED: protein OSB2, chloroplastic [Vitis vinifera]	[more]
gi\|567902870\|ref\|XP_006443923.1\|	2.0e-94	61.02	hypothetical protein CICLE_v10021384mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000424	Primosome_PriB/ssb
IPR011344	ssDNA-bd
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003697	single-stranded DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006260	DNA replication

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003697	single-stranded DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.388770.1	Cucsa.388770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000424	Primosome PriB/single-strand DNA-binding	PFAM	PF00436	SSB	coord: 84..177 score: 1.6
IPR000424	Primosome PriB/single-strand DNA-binding	PROFILE	PS50935	SSB	coord: 82..179 score: 2
IPR011344	Single-stranded DNA-binding protein	PANTHER	PTHR10302	SINGLE-STRANDED DNA-BINDING PROTEIN	coord: 67..280 score: 2.2
IPR011344	Single-stranded DNA-binding protein	TIGRFAMs	TIGR00621	TIGR00621	coord: 84..194 score: 4.9
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 84..184 score: 1.3
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 84..264 score: 3.77
None	No IPR available	PANTHER	PTHR10302:SF0	SINGLE-STRANDED DNA-BINDING PROTEIN, MITOCHONDRIAL	coord: 67..280 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.388770	Cla014807	Watermelon (97103) v1	cgywmB702
Cucsa.388770	Csa7G378540	Cucumber (Chinese Long) v2	cgycuB545
Cucsa.388770	MELO3C015761	Melon (DHL92) v3.5.1	cgymeB640
Cucsa.388770	ClCG09G007510	Watermelon (Charleston Gray)	cgywcgB667
Cucsa.388770	CSPI07G15870	Wild cucumber (PI 183967)	cgycpiB574
Cucsa.388770	CmaCh17G012140	Cucurbita maxima (Rimu)	cgycmaB1078
Cucsa.388770	CmoCh17G011920	Cucurbita moschata (Rifu)	cgycmoB1077
Cucsa.388770	Lsi02G022440	Bottle gourd (USVL1VR-Ls)	cgylsiB631
Cucsa.388770	Cp4.1LG12g11300	Cucurbita pepo (Zucchini)	cgycpeB1028
Cucsa.388770	MELO3C015761.2	Melon (DHL92) v3.6.1	cgymedB634
Cucsa.388770	CsaV3_7G027620	Cucumber (Chinese Long) v3	cgycucB590
Cucsa.388770	Cla97C09G170140	Watermelon (97103) v2	cgywmbB670
Cucsa.388770	Bhi09G000920	Wax gourd	cgywgoB778
Cucsa.388770	Carg07285	Silver-seed gourd	carcgyB0136

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.388770	Cucurbita maxima (Rimu)	cgycmaB1079
Cucsa.388770	Cucurbita maxima (Rimu)	cgycmaB1080
Cucsa.388770	Cucurbita moschata (Rifu)	cgycmoB1078
Cucsa.388770	Cucurbita moschata (Rifu)	cgycmoB1079
Cucsa.388770	Melon (DHL92) v3.5.1	cgymeB636
Cucsa.388770	Cucurbita pepo (Zucchini)	cgycpeB1031
Cucsa.388770	Cucurbita pepo (Zucchini)	cgycpeB1032
Cucsa.388770	Melon (DHL92) v3.6.1	cgymedB631
Cucsa.388770	Silver-seed gourd	carcgyB1103