Cucsa.388680 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.388680
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Photosystem II reaction center W
Location	scaffold03967 : 1098684 .. 1099958 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAATATTAATCCTTTACAAACCCTCCCTTTGATCTCCACTGATCTCCAAATTCCCAATTTCTTGTTTTTTtCTCCCTTCAAAATTTGAAGACCAAATAAATCTAATGGCCGCCGTCACCTCCGCCGCCGCTGCCACTGTCCGCACTTCTCTGGTGCAGAACCGCCTTCTGCCATCAGCTTCACCCGCCCcTTTTCTTCTTGGTGAGTTCTTTCGTTTCTACTACTCTCAAATCGGCCTTTTGTTTTCCTTGTTTTGAAGATCATTGGGTTGATGTAAATCTTGGCTTTGGTTTTTACTTTCATGATGTTTTCATTTTTTCCAAAGGTATGGAAGATCTTCAACATTCTTGGTAGTCAAACATTCTTTCAACCATTTAGTTTTtAAACTTTAAAAATTTAAATGCTTACGGATTTTAGACATGGACTCAACAATAAAATGAGTTAATAACTAATAGTATTTCTTAGATGGTTTTTAAAATAACTAAAATCACTTTTTTTtCATTTTCAATTTAGTTTGAAGCATGATTTTGATTATCTAAAATCAATTTTCGATCAATTATATGTTTAGTAGTGATTTTTAGTATAGGAAATCTGACTTTACTTAATTAAAAACATATTTTAGTGTGATTGATTGGTATAACTTTTTtATGCTTGGATTCTCTTGAGAACAATTTCACTCAATCGTGAATTTTACAACTAACCAAAGTACTTTGCTGCAAACGTCATCTAAGAGTATATTTCAACATAGTTTGTATGGACATCTTTGATATAGGGTTGCCTGCCTTGGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAGGGAAATGGAGAAGTAGAGAACAAATCAAGCAACTTGGGAATGGGGGCATCGTTGATAGCTGCGGCGTGTGCTGCAACGATGTCAAGCCCGGCGATGGCTTTGGTGGATGAGAGACTGAGCACTGAAGGGACTGGGCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTGTTGGGAGTTTTTGCTCTCATTTGGGCATTCTACATTGTTTACACTTCTACTCTCGAAGAGGATGAAGAATCTGGCTTATCACTTTAAGCCAACATTTCTCCATCTTACTTACTATCATTAATTATCGCTACTTTTGTTATTGTTGTGGATATTTTGTCTTTGGCTTGAATTCTGTAGAAGCTTTTGAATTCATATCATACAAGCCTTTCGTTGGGTATCAATGTAGAAAGCCGTGAATGTGATTCATAACTATGTGTCATCGTTTCATTTC

mRNA sequence

AATAATATTAATCCTTTACAAACCCTCCCTTTGATCTCCACTGATCTCCAAATTCCCAATTTCTTGTTTTTTTCTCCCTTCAAAATTTGAAGACCAAATAAATCTAATGGCCGCCGTCACCTCCGCCGCCGCTGCCACTGTCCGCACTTCTCTGGTGCAGAACCGCCTTCTGCCATCAGCTTCACCCGCCCCTTTTCTTCTTGGGTTGCCTGCCTTGGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAGGGAAATGGAGAAGTAGAGAACAAATCAAGCAACTTGGGAATGGGGGCATCGTTGATAGCTGCGGCGTGTGCTGCAACGATGTCAAGCCCGGCGATGGCTTTGGTGGATGAGAGACTGAGCACTGAAGGGACTGGGCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTGTTGGGAGTTTTTGCTCTCATTTGGGCATTCTACATTGTTTACACTTCTACTCTCGAAGAGGATGAAGAATCTGGCTTATCACTTTAAGCCAACATTTCTCCATCTTACTTACTATCATTAATTATCGCTACTTTTGTTATTGTTGTGGATATTTTGTCTTTGGCTTGAATTCTGTAGAAGCTTTTGAATTCATATCATACAAGCCTTTCGTTGGGTATCAATGTAGAAAGCCGTGAATGTGATTCATAACTATGTGTCATCGTTTCATTTC

Coding sequence (CDS)

ATGGCCGCCGTCACCTCCGCCGCCGCTGCCACTGTCCGCACTTCTCTGGTGCAGAACCGCCTTCTGCCATCAGCTTCACCCGCCCcTTTTCTTCTTGGGTTGCCTGCCTTGGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAGGGAAATGGAGAAGTAGAGAACAAATCAAGCAACTTGGGAATGGGGGCATCGTTGATAGCTGCGGCGTGTGCTGCAACGATGTCAAGCCCGGCGATGGCTTTGGTGGATGAGAGACTGAGCACTGAAGGGACTGGGCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTGTTGGGAGTTTTTGCTCTCATTTGGGCATTCTACATTGTTTACACTTCTACTCTCGAAGAGGATGAAGAATCTGGCTTATCACTTTAA

Protein sequence

MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL*

Homology

[Close]

BLAST of Cucsa.388680 vs. Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.5e-38
Identity = 87/140 (62.14%), Postives = 108/140 (77.14%), Query Frame = 1


Query: 1   MAAVTSAAAATV--RTSLVQN-RLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVEN 60
           MA +T++++A++  R SLV N R+  S+SP   +LGLP++ K+  V CS+E K +     
Sbjct: 1   MATITASSSASLVARASLVHNSRVGVSSSP---ILGLPSMTKRSKVTCSIENKPSTTETT 60

Query: 61  KSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIW 120
            ++N  MGASL+AAA AAT+S+PAMALVDER+STEGTGLPFGLSNNLLGWIL GVF LIW
Sbjct: 61  TTTNKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIW 120

Query: 121 AFYIVYTSTLEEDEESGLSL 138
           A Y VY S LEEDEESGLSL
Sbjct: 121 ALYFVYASGLEEDEESGLSL 137

[Close]

BLAST of Cucsa.388680 vs. Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2)

HSP 1 Score: 147.9 bits (372), Expect = 8.2e-35
Identity = 86/139 (61.87%), Postives = 101/139 (72.66%), Query Frame = 1


Query: 1   MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLGLPALGKK-GGVRCSMEGKGNGEVENKS 60
           MA+ T A+A+TV  +     L P+ + +  +LGLP +GKK GGVRCSME K     +   
Sbjct: 1   MASFT-ASASTVSAARPALLLKPTVAISAPVLGLPPMGKKKGGVRCSMETK-----QGNV 60

Query: 61  SNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWA 120
           S +G G S  A AA  A MS+PAMALVDER+STEGTGLPFGLSNNLLGWIL GVF LIW 
Sbjct: 61  SVMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWT 120

Query: 121 FYIVYTSTLEEDEESGLSL 138
           F+ VYTS+LEEDEESGLSL
Sbjct: 121 FFFVYTSSLEEDEESGLSL 133

[Close]

BLAST of Cucsa.388680 vs. Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.8e-24
Identity = 73/136 (53.68%), Postives = 88/136 (64.71%), Query Frame = 1


Query: 1   MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLGLPALGKKGG--VRCSMEGKGNGEVENK 60
           MA V++AAA    TS+V   +L  A P    LGLP +  +    VRC+   +        
Sbjct: 1   MATVSAAAA----TSVVARAVL--AGP----LGLPQMRARRSERVRCNYSKEA---ATPA 60

Query: 61  SSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWA 120
           ++  G GASL+A A  A   +PAMALVDER+STEGTGL  GLSNNLLGWILLGVF LIW+
Sbjct: 61  AAVKGAGASLLAMAATA---APAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWS 120

Query: 121 FYIVYTSTLEEDEESG 135
            Y +YTS LEEDEESG
Sbjct: 121 LYTIYTSDLEEDEESG 120

[Close]

BLAST of Cucsa.388680 vs. Swiss-Prot
Match: PSBW_CHLRE (Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhardtii GN=psbW PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-10
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 1


Query: 60  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAF 119
           S +    ++++   A   + PA ALVDER++ +GTG PFG+++ +LGW+LLGVF  +WA 
Sbjct: 36  SEVAKKVAMLSTLPATLAAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAI 95

Query: 120 YIVYTSTLE--EDEESGLSL 138
           + +    L   ED + GL L
Sbjct: 96  WFIGQKDLGDFEDADDGLKL 115

[Close]

BLAST of Cucsa.388680 vs. TrEMBL
Match: A0A0A0K4V6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G378440 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.3e-68
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1


Query: 1   MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSS 60
           MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSS
Sbjct: 1   MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSS 60

Query: 61  NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFY 120
           NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFY
Sbjct: 61  NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFY 120

Query: 121 IVYTSTLEEDEESGLSL 138
           IVYTSTLEEDEESGLSL
Sbjct: 121 IVYTSTLEEDEESGLSL 137

[Close]

BLAST of Cucsa.388680 vs. TrEMBL
Match: A0A151SIW9_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_000994 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.3e-42
Identity = 97/139 (69.78%), Postives = 107/139 (76.98%), Query Frame = 1


Query: 1   MAAVTSAAAAT--VRTSLVQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENK 60
           MA + +  A T   R  LV  R  P+   +  +LGLPA+GK G VRCSMEGK + E    
Sbjct: 1   MATIIAGTATTSITRAGLVLKR--PAGISSSTVLGLPAMGKAGRVRCSMEGKPSAE---S 60

Query: 61  SSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWA 120
           +SN+GMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWIL GVF LIWA
Sbjct: 61  NSNIGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWA 120

Query: 121 FYIVYTSTLEEDEESGLSL 138
            Y VY S+LEEDEESGLSL
Sbjct: 121 LYFVYASSLEEDEESGLSL 134

[Close]

BLAST of Cucsa.388680 vs. TrEMBL
Match: C6SWM3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G032200 PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.4e-40
Identity = 97/138 (70.29%), Postives = 104/138 (75.36%), Query Frame = 1


Query: 3   AVTSAAAAT---VRTSLVQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 62
           A  SAA  T    R  LVQ R L  +SP   +LGLPA+GK G V CSME K +   E+ S
Sbjct: 2   ATISAAITTPSITRACLVQKRSLGFSSP---VLGLPAMGKVGRVSCSMEEKPSSVKESSS 61

Query: 63  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAF 122
           S LGMGASL+AAA AA MS PAMALVDERLSTEGTGLPFGLSNNLLGWIL GVF LIWA 
Sbjct: 62  SMLGMGASLMAAASAAAMSGPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWAL 121

Query: 123 YIVYTSTLEEDEESGLSL 138
           Y VYTS+LEEDEESGLSL
Sbjct: 122 YFVYTSSLEEDEESGLSL 136

[Close]

BLAST of Cucsa.388680 vs. TrEMBL
Match: A0A0B2P8A4_GLYSO (Photosystem II reaction center W protein, chloroplastic OS=Glycine soja GN=glysoja_011071 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.4e-40
Identity = 97/138 (70.29%), Postives = 104/138 (75.36%), Query Frame = 1


Query: 3   AVTSAAAAT---VRTSLVQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 62
           A  SAA  T    R  LVQ R L  +SP   +LGLPA+GK G V CSME K +   E+ S
Sbjct: 2   ATISAAITTPSITRACLVQKRSLGFSSP---VLGLPAMGKVGRVSCSMEEKPSSVKESSS 61

Query: 63  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAF 122
           S LGMGASL+AAA AA MS PAMALVDERLSTEGTGLPFGLSNNLLGWIL GVF LIWA 
Sbjct: 62  SMLGMGASLMAAASAAAMSGPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWAL 121

Query: 123 YIVYTSTLEEDEESGLSL 138
           Y VYTS+LEEDEESGLSL
Sbjct: 122 YFVYTSSLEEDEESGLSL 136

[Close]

BLAST of Cucsa.388680 vs. TrEMBL
Match: V7BFP6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G177300g PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.5e-40
Identity = 97/138 (70.29%), Postives = 105/138 (76.09%), Query Frame = 1


Query: 3   AVTSAAAAT---VRTSLVQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 62
           A  SAA  T    R  LVQ R L  +SP   +LGLP +GK G VRCSME K    V+  S
Sbjct: 2   ATISAATTTPSITRACLVQKRPLGVSSP---VLGLPTMGKVGRVRCSMEEKPC--VKESS 61

Query: 63  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAF 122
           S++GMGASL+AA CAA MSSPAMALVDERLSTEGTGLPFGLSNNLLGWIL GVF LIWA 
Sbjct: 62  SSMGMGASLMAATCAAVMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWAL 121

Query: 123 YIVYTSTLEEDEESGLSL 138
           + VYTSTLEEDEESGLSL
Sbjct: 122 FFVYTSTLEEDEESGLSL 134

[Close]

BLAST of Cucsa.388680 vs. TAIR10
Match: AT2G30570.1 (AT2G30570.1 photosystem II reaction center W)

HSP 1 Score: 147.9 bits (372), Expect = 4.6e-36
Identity = 86/139 (61.87%), Postives = 101/139 (72.66%), Query Frame = 1


Query: 1   MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLGLPALGKK-GGVRCSMEGKGNGEVENKS 60
           MA+ T A+A+TV  +     L P+ + +  +LGLP +GKK GGVRCSME K     +   
Sbjct: 1   MASFT-ASASTVSAARPALLLKPTVAISAPVLGLPPMGKKKGGVRCSMETK-----QGNV 60

Query: 61  SNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWA 120
           S +G G S  A AA  A MS+PAMALVDER+STEGTGLPFGLSNNLLGWIL GVF LIW 
Sbjct: 61  SVMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWT 120

Query: 121 FYIVYTSTLEEDEESGLSL 138
           F+ VYTS+LEEDEESGLSL
Sbjct: 121 FFFVYTSSLEEDEESGLSL 133

[Close]

BLAST of Cucsa.388680 vs. NCBI nr
Match: gi|449458436|ref|XP_004146953.1| (PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 1.9e-68
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1


Query: 1   MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSS 60
           MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSS
Sbjct: 1   MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSS 60

Query: 61  NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFY 120
           NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFY
Sbjct: 61  NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFY 120

Query: 121 IVYTSTLEEDEESGLSL 138
           IVYTSTLEEDEESGLSL
Sbjct: 121 IVYTSTLEEDEESGLSL 137

[Close]

BLAST of Cucsa.388680 vs. NCBI nr
Match: gi|659100814|ref|XP_008451280.1| (PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis melo])

HSP 1 Score: 256.9 bits (655), Expect = 2.0e-65
Identity = 134/138 (97.10%), Postives = 134/138 (97.10%), Query Frame = 1


Query: 1   MAAVTSAAAATVRTSLVQNR-LLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 60
           MAAVTSAAAA VRTSLVQNR  LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS
Sbjct: 1   MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 60

Query: 61  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAF 120
           SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVF LIWAF
Sbjct: 61  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 120

Query: 121 YIVYTSTLEEDEESGLSL 138
           YIVYTSTLEEDEESGLSL
Sbjct: 121 YIVYTSTLEEDEESGLSL 138

[Close]

BLAST of Cucsa.388680 vs. NCBI nr
Match: gi|1012343602|gb|KYP54794.1| (hypothetical protein KK1_000994 [Cajanus cajan])

HSP 1 Score: 178.3 bits (451), Expect = 9.0e-42
Identity = 97/139 (69.78%), Postives = 107/139 (76.98%), Query Frame = 1


Query: 1   MAAVTSAAAAT--VRTSLVQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENK 60
           MA + +  A T   R  LV  R  P+   +  +LGLPA+GK G VRCSMEGK + E    
Sbjct: 1   MATIIAGTATTSITRAGLVLKR--PAGISSSTVLGLPAMGKAGRVRCSMEGKPSAE---S 60

Query: 61  SSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWA 120
           +SN+GMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWIL GVF LIWA
Sbjct: 61  NSNIGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWA 120

Query: 121 FYIVYTSTLEEDEESGLSL 138
            Y VY S+LEEDEESGLSL
Sbjct: 121 LYFVYASSLEEDEESGLSL 134

[Close]

BLAST of Cucsa.388680 vs. NCBI nr
Match: gi|951019344|ref|XP_014512102.1| (PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Vigna radiata var. radiata])

HSP 1 Score: 177.9 bits (450), Expect = 1.2e-41
Identity = 97/137 (70.80%), Postives = 109/137 (79.56%), Query Frame = 1


Query: 1   MAAVTSAAAATVRTSLVQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSS 60
           MA +++A A    T LVQ R L  +SP   +LGLP +GK G VRCSME K + + E  SS
Sbjct: 1   MATISAATATPSITCLVQKRPLGVSSP---VLGLPTMGKVGRVRCSMEEKPSVK-EASSS 60

Query: 61  NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFY 120
           ++GMGASL+AA CAA MS PAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWA +
Sbjct: 61  SMGMGASLMAATCAAVMSGPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWALF 120

Query: 121 IVYTSTLEEDEESGLSL 138
            VYTSTLEEDEESGLSL
Sbjct: 121 FVYTSTLEEDEESGLSL 133

[Close]

BLAST of Cucsa.388680 vs. NCBI nr
Match: gi|351721030|ref|NP_001236684.1| (uncharacterized protein LOC100305788 [Glycine max])

HSP 1 Score: 172.6 bits (436), Expect = 4.9e-40
Identity = 97/138 (70.29%), Postives = 104/138 (75.36%), Query Frame = 1


Query: 3   AVTSAAAAT---VRTSLVQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 62
           A  SAA  T    R  LVQ R L  +SP   +LGLPA+GK G V CSME K +   E+ S
Sbjct: 2   ATISAAITTPSITRACLVQKRSLGFSSP---VLGLPAMGKVGRVSCSMEEKPSSVKESSS 61

Query: 63  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAF 122
           S LGMGASL+AAA AA MS PAMALVDERLSTEGTGLPFGLSNNLLGWIL GVF LIWA 
Sbjct: 62  SMLGMGASLMAAASAAAMSGPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWAL 121

Query: 123 YIVYTSTLEEDEESGLSL 138
           Y VYTS+LEEDEESGLSL
Sbjct: 122 YFVYTSSLEEDEESGLSL 136

The following BLAST results are available for this feature:

BLAST of Cucsa.388680 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSBW_SPIOL	3.5e-38	62.14	Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=...	[more]
PSBW_ARATH	8.2e-35	61.87	Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana ...	[more]
PSBW_ORYSJ	3.8e-24	53.68	Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. j...	[more]
PSBW_CHLRE	1.8e-10	40.00	Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhar...	[more]

BLAST of Cucsa.388680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4V6_CUCSA	1.3e-68	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G378440 PE=4 SV=1	[more]
A0A151SIW9_CAJCA	6.3e-42	69.78	Uncharacterized protein OS=Cajanus cajan GN=KK1_000994 PE=4 SV=1	[more]
C6SWM3_SOYBN	3.4e-40	70.29	Uncharacterized protein OS=Glycine max GN=GLYMA_10G032200 PE=2 SV=1	[more]
A0A0B2P8A4_GLYSO	3.4e-40	70.29	Photosystem II reaction center W protein, chloroplastic OS=Glycine soja GN=glyso...	[more]
V7BFP6_PHAVU	4.5e-40	70.29	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G177300g PE=4 SV=1	[more]

BLAST of Cucsa.388680 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30570.1	4.6e-36	61.87	photosystem II reaction center W	[more]

BLAST of Cucsa.388680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458436\|ref\|XP_004146953.1\|	1.9e-68	100.00	PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis...	[more]
gi\|659100814\|ref\|XP_008451280.1\|	2.0e-65	97.10	PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis...	[more]
gi\|1012343602\|gb\|KYP54794.1\|	9.0e-42	69.78	hypothetical protein KK1_000994 [Cajanus cajan]	[more]
gi\|951019344\|ref\|XP_014512102.1\|	1.2e-41	70.80	PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Vigna r...	[more]
gi\|351721030\|ref\|NP_001236684.1\|	4.9e-40	70.29	uncharacterized protein LOC100305788 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009806	PSII_PsbW_class2

Vocabulary: **Cellular Component**
Term	Definition
GO:0009507	chloroplast
GO:0009523	photosystem II

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.388680.1	Cucsa.388680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009806	Photosystem II PsbW, class 2	PFAM	PF07123	PsbW	coord: 1..137 score: 4.0
None	No IPR available	PANTHER	PTHR34552	FAMILY NOT NAMED	coord: 1..137 score: 8.5
None	No IPR available	PANTHER	PTHR34552:SF1	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC	coord: 1..137 score: 8.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.388680	Cla014815	Watermelon (97103) v1	cgywmB702
Cucsa.388680	Csa7G378440	Cucumber (Chinese Long) v2	cgycuB545
Cucsa.388680	MELO3C015772	Melon (DHL92) v3.5.1	cgymeB640
Cucsa.388680	ClCG09G007590	Watermelon (Charleston Gray)	cgywcgB667
Cucsa.388680	CSPI07G15760	Wild cucumber (PI 183967)	cgycpiB574
Cucsa.388680	CmaCh08G003100	Cucurbita maxima (Rimu)	cgycmaB1080
Cucsa.388680	CmoCh08G003070	Cucurbita moschata (Rifu)	cgycmoB1079
Cucsa.388680	CmoCh17G011960	Cucurbita moschata (Rifu)	cgycmoB1077
Cucsa.388680	Cp4.1LG12g11280	Cucurbita pepo (Zucchini)	cgycpeB1028
Cucsa.388680	Cp4.1LG17g06190	Cucurbita pepo (Zucchini)	cgycpeB1032
Cucsa.388680	MELO3C015772.2	Melon (DHL92) v3.6.1	cgymedB634
Cucsa.388680	CsaV3_7G027520	Cucumber (Chinese Long) v3	cgycucB590
Cucsa.388680	Cla97C09G170230	Watermelon (97103) v2	cgywmbB670
Cucsa.388680	Bhi09G000932	Wax gourd	cgywgoB778
Cucsa.388680	Carg07289	Silver-seed gourd	carcgyB0136
Cucsa.388680	Carg25778	Silver-seed gourd	carcgyB1103

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.388680	Cucurbita pepo (Zucchini)	cgycpeB1031
Cucsa.388680	Bottle gourd (USVL1VR-Ls)	cgylsiB631
Cucsa.388680	Melon (DHL92) v3.6.1	cgymedB631
Cucsa.388680	Cucurbita maxima (Rimu)	cgycmaB1078
Cucsa.388680	Cucurbita maxima (Rimu)	cgycmaB1079
Cucsa.388680	Cucurbita moschata (Rifu)	cgycmoB1078
Cucsa.388680	Melon (DHL92) v3.5.1	cgymeB636