Cucsa.388400 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.388400
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	U-box domain-containing protein 3
Location	scaffold03967 : 818359 .. 819414 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAACAGCCTCTGTGCAATGTCTGATTAACAGTATTTCCAGATTCATTCATCTAGTTTCATGCCACACTACAAAGCCTTTGCCTCTTCCCAAGAAATGCAGAAATCTCGTTGTTGTCTTAAAACTTCTGAAAGTCGTCCTTGATGATGTCATTAACCTCAAACTCTCTTCAGATGAGTTACTTTATCGTGAATGTGAGTCACTGGATGCAGCTGTATATGAAGCTCGAGAATTCATCGAAAAATGGTGTCTGAAGACAGCAAAATTTACAGTGAGTTACCTTTTGAGAACTAGCCATATTTCAGTTCTTTCTCAGATTTTATATTAGATTTCTTTTTCCTTTTTCTAAATAACTAAGTTGTTTGTACTTCGGTACAAGTCCTTTTTCATTTTATCAATGAAAATCCTTGTTTCCATTTCAAAAATAAATTAATAATAATATTAACTAAGCTGTTTGGAGTAGGAAACACTTGGCTTGAACTTTTTCTCTCTTATTTTGAAATAAAAGTTCTCATGATTTTGATACATCTTTTCTCATAATTTTCTGCTTATTTGATAAGAATGATATTGACATTTAATGGACTGTCCAGAAATGTCTTGAAGGCCTTCAATCATGGAAGCTATGAAGGATTGGTATCGACCCAAACTCTGACACCTTCTAAAACTGATCAAAGCATTTCATTTGACGTCAAATCGTTGCTGAACACAACAATGCGAAGGAGGAACTACATCACATCAACCAGATTATGGATCTAGTTATCCTTATACAAGATTGGATGGTTAGAAAGGACTACTTCCGTGGGATAGATGGAGTCCCGATTCCTTCGTAATTTCACTGCCCATTGCCATTAGAACTGATGGCTTGATCCAGTAATTGTGGCATATTTGGATTGATAGCGGGTTAAACATTTGGCCGAACACTCATCAGATGCGCACACATACTAATCTCGTTCCCAACCACACCATTAAAGCCATGGTATTGAATTGGTGCGATGAAAACAAATTGAACTTTAATTTGAATGGAAGTGATAACTTCCATTATTTTATACACTAG

mRNA sequence

ATGGGAACAGCCTCTGTGCAATGTCTGATTAACAGTATTTCCAGATTCATTCATCTAGTTTCATGCCACACTACAAAGCCTTTGCCTCTTCCCAAGAAATGCAGAAATCTCGTTGTTGTCTTAAAACTTCTGAAAGTCGTCCTTGATGATGTCATTAACCTCAAACTCTCTTCAGATGAGTTACTTTATCGTGAATGTGAGTCACTGGATGCAGCTGTATATGAAGCTCGAGAATTCATCGAAAAATGGTGTCTGAAGACAGCAAAATTTACAGAGGAACTACATCACATCAACCAGATTATGGATCTAGTTATCCTTATACAAGATTGGATGGTTAGAAAGGACTACTTCCGTGGGATAGATGGAGTCCCGATTCCTTCCGGGTTAAACATTTGGCCGAACACTCATCAGATGCGCACACATACTAATCTCGTTCCCAACCACACCATTAAAGCCATGGTATTGAATTGGTGCGATGAAAACAAATTGAACTTTAATTTGAATGGAAGTGATAACTTCCATTATTTTATACACTAG

Coding sequence (CDS)

ATGGGAACAGCCTCTGTGCAATGTCTGATTAACAGTATTTCCAGATTCATTCATCTAGTTTCATGCCACACTACAAAGCCTTTGCCTCTTCCCAAGAAATGCAGAAATCTCGTTGTTGTCTTAAAACTTCTGAAAGTCGTCCTTGATGATGTCATTAACCTCAAACTCTCTTCAGATGAGTTACTTTATCGTGAATGTGAGTCACTGGATGCAGCTGTATATGAAGCTCGAGAATTCATCGAAAAATGGTGTCTGAAGACAGCAAAATTTACAGAGGAACTACATCACATCAACCAGATTATGGATCTAGTTATCCTTATACAAGATTGGATGGTTAGAAAGGACTACTTCCGTGGGATAGATGGAGTCCCGATTCCTTCCGGGTTAAACATTTGGCCGAACACTCATCAGATGCGCACACATACTAATCTCGTTCCCAACCACACCATTAAAGCCATGGTATTGAATTGGTGCGATGAAAACAAATTGAACTTTAATTTGAATGGAAGTGATAACTTCCATTATTTTATACACTAG

Protein sequence

MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDELLYRECESLDAAVYEAREFIEKWCLKTAKFTEELHHINQIMDLVILIQDWMVRKDYFRGIDGVPIPSGLNIWPNTHQMRTHTNLVPNHTIKAMVLNWCDENKLNFNLNGSDNFHYFIH*

Homology

[Close]

BLAST of Cucsa.388400 vs. Swiss-Prot
Match: PUB3_ARATH (U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 3.1e-18
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 1


Query: 1  MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
          M    V+CL+NSISR++HLV+C T +  P+     N+V++LKLLK +LD+V++ K+ SD+
Sbjct: 1  MDPVPVRCLLNSISRYLHLVACQTIRFNPIQTCIGNMVLLLKLLKPLLDEVVDCKIPSDD 60

Query: 61 LLYRECESLDAAVYEAREFIEKWCLKTAK 90
           LY+ CE LD+ V +AREF+E W  K +K
Sbjct: 61 CLYKGCEDLDSVVNQAREFLEDWSPKLSK 89

HSP 2 Score: 49.7 bits (117), Expect = 3.9e-05
Identity = 18/49 (36.73%), Postives = 31/49 (63.27%), Query Frame = 1


Query: 125 IPSGLNIWPNTHQMRTHTNLVPNHTIKAMVLNWCDENKLNFNLNGSDNF 174
           + +GL + P T Q+ TH  L+PN+T+KAM+ +W + N++N   N    +
Sbjct: 272 LDNGLAVCPRTRQVLTHQELIPNYTVKAMIASWLEANRINLATNSCHQY 320

[Close]

BLAST of Cucsa.388400 vs. TrEMBL
Match: A0A0A0K726_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374670 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.6e-37
Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 1


Query: 1  MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
          MGTASVQCL NSISRFIHLVSCHTTKPLPLPKKC+NLVVVLKLLKVVLDDVI+LKLSSDE
Sbjct: 1  MGTASVQCLTNSISRFIHLVSCHTTKPLPLPKKCKNLVVVLKLLKVVLDDVISLKLSSDE 60

Query: 61 LLYRECESLDAAVYEAREFIEKWCLKTAKFTEEL 95
          LLY ECESLDAAV EAREF+E WC KT+K    L
Sbjct: 61 LLYSECESLDAAVNEAREFVENWCPKTSKICSAL 94

[Close]

BLAST of Cucsa.388400 vs. TrEMBL
Match: A0A0A0K726_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374670 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 6.5e-23
Identity = 67/133 (50.38%), Postives = 76/133 (57.14%), Query Frame = 1


Query: 92  EELHHINQIMDLVILIQDWMVRK------------DYFRG-------IDGVP-------- 151
           EELHHINQIMDL+I I+DWMVRK             YFR        +D V         
Sbjct: 203 EELHHINQIMDLIIRIRDWMVRKDYFHGINGVSVPSYFRCPLSLELMLDPVIVASGQTYD 262

Query: 152 -------IPSGLNIWPNTHQMRTHTNLVPNHTIKAMVLNWCDENKLNF------------ 179
                  I SGLNI PNTHQM THTNL+ NHT+KAM+L+WCDENKLNF            
Sbjct: 263 RSSIQKWIDSGLNICPNTHQMLTHTNLISNHTVKAMILSWCDENKLNFSSLSSLVQLSQQ 322

HSP 2 Score: 132.1 bits (331), Expect = 6.7e-28
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 1


Query: 1   MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
           M T SV+CLINSISRFIHLVSC T KP+P+ K CRN+V +LKLLK VLDDV+N K+ SDE
Sbjct: 1   MDTKSVRCLINSISRFIHLVSCQTLKPMPIQKDCRNMVGLLKLLKPVLDDVVNCKIPSDE 60

Query: 61  LLYRECESLDAAVYEAREFIEKWCLKTAKFTEELHHINQIMDL 104
           +L++ECE LD AV EAREF+E WC K +K    L     +M +
Sbjct: 61  ILFKECEELDMAVNEAREFVENWCPKMSKIFSVLQSEQLVMKI 103

[Close]

BLAST of Cucsa.388400 vs. TrEMBL
Match: F6HZL0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g03520 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.7e-04
Identity = 22/46 (47.83%), Postives = 31/46 (67.39%), Query Frame = 1


Query: 125 IPSGLNIWPNTHQMRTHTNLVPNHTIKAMVLNWCDENKLNFNLNGS 171
           +  GL I P T Q   H NL+PN+T+KA++ NWC+EN  N  L+G+
Sbjct: 270 LDQGLMICPKTRQTLAHANLIPNYTVKALIENWCEEN--NITLSGT 313

HSP 2 Score: 51.2 bits (121), Expect = 1.5e-03
Identity = 47/152 (30.92%), Postives = 70/152 (46.05%), Query Frame = 1


Query: 53  NLKLSSDELLYRECESLDAAVYEAREFIEKWCLKTAKFTEELHHINQIMDLVILIQDWMV 112
           +L L+S + L +E  +++      RE +     KTA    EL  INQI++LV  I+D MV
Sbjct: 173 SLSLTSKQELLKESVAVE------RERMNAQVNKTAY---ELDQINQIVELVSHIRDCMV 232

Query: 113 RKDYFRGIDGVPIP--------------------------SGLNIWPNTHQM---RTHTN 171
           R   F  I+GV IP                          S +  W +   M   +T   
Sbjct: 233 RLGGFEAINGVRIPSYFRCPLSLELMMDPVIVASGQTYERSSIQKWLDQGLMICPKTRQT 292

HSP 3 Score: 120.6 bits (301), Expect = 2.0e-24
Identity = 60/109 (55.05%), Postives = 79/109 (72.48%), Query Frame = 1


Query: 1   MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
           + T+SV+CL+NSISRFIHLVSC   KP+PL K C N+V VLK LK VLDD+++ K+  DE
Sbjct: 6   INTSSVKCLVNSISRFIHLVSCQAVKPMPLQKNCNNMVCVLKHLKPVLDDIVDFKIPFDE 65

Query: 61  LLYRECESLDAAVYEAREFIEKWCLKTAKFTEELHHINQIMDLVILIQD 110
            L+RECE LD  V EAREFIEKW  K ++    +H + Q  +L+I +Q+
Sbjct: 66  NLHRECEELDMRVNEAREFIEKWGPKMSR----IHSVLQSGELLIKLQN 110

[Close]

BLAST of Cucsa.388400 vs. TrEMBL
Match: K7KFF3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G163900 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.2e-06
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 1


Query: 128 GLNIWPNTHQMRTHTNLVPNHTIKAMVLNWCDEN--KLNFNLNGSDNFH 175
           GL + PNT Q+  HTNL+PN+T+KAM+ NWC+EN  KL  N   S++ H
Sbjct: 277 GLTVCPNTRQILVHTNLIPNYTVKAMIANWCEENNVKLPSNSKQSNSSH 325

HSP 2 Score: 120.6 bits (301), Expect = 2.0e-24
Identity = 60/109 (55.05%), Postives = 79/109 (72.48%), Query Frame = 1


Query: 1   MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
           + T+SV+CL+NSISRFIHLVSC   KP+PL K C N+V VLK LK VLDD+++ K+  DE
Sbjct: 6   INTSSVKCLVNSISRFIHLVSCQAVKPMPLQKNCNNMVCVLKHLKPVLDDIVDFKIPFDE 65

Query: 61  LLYRECESLDAAVYEAREFIEKWCLKTAKFTEELHHINQIMDLVILIQD 110
            L+RECE LD  V EAREFIEKW  K ++    +H + Q  +L+I +Q+
Sbjct: 66  NLHRECEELDMRVNEAREFIEKWGPKMSR----IHSVLQSGELLIKLQN 110

[Close]

BLAST of Cucsa.388400 vs. TrEMBL
Match: I1JP44_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G163900 PE=4 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 4.2e-06
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 1


Query: 128 GLNIWPNTHQMRTHTNLVPNHTIKAMVLNWCDEN--KLNFNLNGSDNFH 175
           GL + PNT Q+  HTNL+PN+T+KAM+ NWC+EN  KL  N   S++ H
Sbjct: 277 GLTVCPNTRQILVHTNLIPNYTVKAMIANWCEENNVKLPSNSKQSNSSH 325

HSP 2 Score: 120.6 bits (301), Expect = 2.0e-24
Identity = 60/109 (55.05%), Postives = 79/109 (72.48%), Query Frame = 1


Query: 1   MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
           + T+SV+CL+NSISRFIHLVSC   KP+PL K C N+V VLK LK VLDD+++ K+  DE
Sbjct: 6   INTSSVKCLVNSISRFIHLVSCQAVKPMPLQKNCNNMVCVLKHLKPVLDDIVDFKIPFDE 65

Query: 61  LLYRECESLDAAVYEAREFIEKWCLKTAKFTEELHHINQIMDLVILIQD 110
            L+RECE LD  V EAREFIEKW  K ++    +H + Q  +L+I +Q+
Sbjct: 66  NLHRECEELDMRVNEAREFIEKWGPKMSR----IHSVLQSGELLIKLQN 110

[Close]

BLAST of Cucsa.388400 vs. TAIR10
Match: AT3G54790.1 (AT3G54790.1 ARM repeat superfamily protein)

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-19
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 1


Query: 1  MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
          M    V+CL+NSISR++HLV+C T +  P+     N+V++LKLLK +LD+V++ K+ SD+
Sbjct: 1  MDPVPVRCLLNSISRYLHLVACQTIRFNPIQTCIGNMVLLLKLLKPLLDEVVDCKIPSDD 60

Query: 61 LLYRECESLDAAVYEAREFIEKWCLKTAK 90
           LY+ CE LD+ V +AREF+E W  K +K
Sbjct: 61 CLYKGCEDLDSVVNQAREFLEDWSPKLSK 89

HSP 2 Score: 49.7 bits (117), Expect = 2.2e-06
Identity = 18/49 (36.73%), Postives = 31/49 (63.27%), Query Frame = 1


Query: 125 IPSGLNIWPNTHQMRTHTNLVPNHTIKAMVLNWCDENKLNFNLNGSDNF 174
           + +GL + P T Q+ TH  L+PN+T+KAM+ +W + N++N   N    +
Sbjct: 272 LDNGLAVCPRTRQVLTHQELIPNYTVKAMIASWLEANRINLATNSCHQY 320

[Close]

BLAST of Cucsa.388400 vs. TAIR10
Match: AT2G23140.1 (AT2G23140.1 RING/U-box superfamily protein with ARM repeat domain)

HSP 1 Score: 50.8 bits (120), Expect = 9.9e-07
Identity = 19/37 (51.35%), Postives = 26/37 (70.27%), Query Frame = 1


Query: 125 IPSGLNIWPNTHQMRTHTNLVPNHTIKAMVLNWCDEN 162
           I  GL + P T Q  THT L+PN+T+KA++ NWC+ N
Sbjct: 267 IDLGLKVCPKTRQTLTHTTLIPNYTVKALIANWCETN 303

[Close]

BLAST of Cucsa.388400 vs. NCBI nr
Match: gi|778727369|ref|XP_011659248.1| (PREDICTED: uncharacterized protein LOC101202866 isoform X1 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 6.2e-43
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 1


Query: 1   MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
           MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE
Sbjct: 109 MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 168

Query: 61  LLYRECESLDAAVYEAREFIEKWCLKTAKFTE 93
           LLY ECESLDAAVYEAREFIEKWCLKTAKFT+
Sbjct: 169 LLYSECESLDAAVYEAREFIEKWCLKTAKFTK 200

[Close]

BLAST of Cucsa.388400 vs. NCBI nr
Match: gi|778727372|ref|XP_011659249.1| (PREDICTED: uncharacterized protein LOC101202866 isoform X2 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 6.2e-43
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 1


Query: 1   MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
           MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE
Sbjct: 105 MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 164

Query: 61  LLYRECESLDAAVYEAREFIEKWCLKTAKFTE 93
           LLY ECESLDAAVYEAREFIEKWCLKTAKFT+
Sbjct: 165 LLYSECESLDAAVYEAREFIEKWCLKTAKFTK 196

[Close]

BLAST of Cucsa.388400 vs. NCBI nr
Match: gi|778727334|ref|XP_011659243.1| (PREDICTED: U-box domain-containing protein 3 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 2.3e-37
Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 1


Query: 1  MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
          MGTASVQCL NSISRFIHLVSCHTTKPLPLPKKC+NLVVVLKLLKVVLDDVI+LKLSSDE
Sbjct: 1  MGTASVQCLTNSISRFIHLVSCHTTKPLPLPKKCKNLVVVLKLLKVVLDDVISLKLSSDE 60

Query: 61 LLYRECESLDAAVYEAREFIEKWCLKTAKFTEEL 95
          LLY ECESLDAAV EAREF+E WC KT+K    L
Sbjct: 61 LLYSECESLDAAVNEAREFVENWCPKTSKICSAL 94

[Close]

BLAST of Cucsa.388400 vs. NCBI nr
Match: gi|778727334|ref|XP_011659243.1| (PREDICTED: U-box domain-containing protein 3 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 9.3e-23
Identity = 67/133 (50.38%), Postives = 76/133 (57.14%), Query Frame = 1


Query: 92  EELHHINQIMDLVILIQDWMVRK------------DYFRG-------IDGVP-------- 151
           EELHHINQIMDL+I I+DWMVRK             YFR        +D V         
Sbjct: 203 EELHHINQIMDLIIRIRDWMVRKDYFHGINGVSVPSYFRCPLSLELMLDPVIVASGQTYD 262

Query: 152 -------IPSGLNIWPNTHQMRTHTNLVPNHTIKAMVLNWCDENKLNF------------ 179
                  I SGLNI PNTHQM THTNL+ NHT+KAM+L+WCDENKLNF            
Sbjct: 263 RSSIQKWIDSGLNICPNTHQMLTHTNLISNHTVKAMILSWCDENKLNFSSLSSLVQLSQQ 322

HSP 2 Score: 162.5 bits (410), Expect = 6.6e-37
Identity = 81/94 (86.17%), Postives = 83/94 (88.30%), Query Frame = 1


Query: 1  MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
          MGTASVQCL NSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVI+LKLSSDE
Sbjct: 1  MGTASVQCLTNSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVISLKLSSDE 60

Query: 61 LLYRECESLDAAVYEAREFIEKWCLKTAKFTEEL 95
          L Y ECESLD AV EAREFIE WC KT+K    L
Sbjct: 61 LFYSECESLDTAVNEAREFIENWCPKTSKICSAL 94

[Close]

BLAST of Cucsa.388400 vs. NCBI nr
Match: gi|659100738|ref|XP_008451242.1| (PREDICTED: U-box domain-containing protein 3 [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 2.7e-22
Identity = 66/133 (49.62%), Postives = 76/133 (57.14%), Query Frame = 1


Query: 92  EELHHINQIMDLVILIQDWMVRK------------DYFRG-------IDGVP-------- 151
           +ELHHINQIMDL+I I+DWMVRK             YFR        +D V         
Sbjct: 203 KELHHINQIMDLIIRIRDWMVRKDYFHGINGVSVPSYFRCPLSLELMLDPVIVASGQTYD 262

Query: 152 -------IPSGLNIWPNTHQMRTHTNLVPNHTIKAMVLNWCDENKLNF------------ 179
                  I SGLNI PNTHQM THTNL+ NHT+KAM+L+WCDENKLNF            
Sbjct: 263 RSSIQKWIDSGLNICPNTHQMLTHTNLISNHTVKAMILSWCDENKLNFSSLSSLVQLSQQ 322

HSP 2 Score: 132.1 bits (331), Expect = 9.6e-28
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 1


Query: 1   MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
           M T SV+CLINSISRFIHLVSC T KP+P+ K CRN+V +LKLLK VLDDV+N K+ SDE
Sbjct: 15  MDTKSVRCLINSISRFIHLVSCQTLKPMPIQKDCRNMVGLLKLLKPVLDDVVNCKIPSDE 74

Query: 61  LLYRECESLDAAVYEAREFIEKWCLKTAKFTEELHHINQIMDL 104
           +L++ECE LD AV EAREF+E WC K +K    L     +M +
Sbjct: 75  ILFKECEELDMAVNEAREFVENWCPKMSKIFSVLQSEQLVMKI 117

The following BLAST results are available for this feature:

BLAST of Cucsa.388400 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PUB3_ARATH	3.1e-18	48.31	U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2	[more]

BLAST of Cucsa.388400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K726_CUCSA	1.6e-37	86.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374670 PE=4 SV=1	[more]
A0A0A0K726_CUCSA	6.5e-23	50.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374670 PE=4 SV=1	[more]
F6HZL0_VITVI	6.7e-04	47.83	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g03520 PE=4 SV=...	[more]
K7KFF3_SOYBN	4.2e-06	53.06	Uncharacterized protein OS=Glycine max GN=GLYMA_03G163900 PE=4 SV=1	[more]
I1JP44_SOYBN	4.2e-06	53.06	Uncharacterized protein OS=Glycine max GN=GLYMA_03G163900 PE=4 SV=2	[more]

BLAST of Cucsa.388400 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54790.1	1.7e-19	48.31	ARM repeat superfamily protein	[more]
AT2G23140.1	9.9e-07	51.35	RING/U-box superfamily protein with ARM repeat domain	[more]

BLAST of Cucsa.388400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778727369\|ref\|XP_011659248.1\|	6.2e-43	97.83	PREDICTED: uncharacterized protein LOC101202866 isoform X1 [Cucumis sativus]	[more]
gi\|778727372\|ref\|XP_011659249.1\|	6.2e-43	97.83	PREDICTED: uncharacterized protein LOC101202866 isoform X2 [Cucumis sativus]	[more]
gi\|778727334\|ref\|XP_011659243.1\|	2.3e-37	86.17	PREDICTED: U-box domain-containing protein 3 [Cucumis sativus]	[more]
gi\|778727334\|ref\|XP_011659243.1\|	9.3e-23	50.38	PREDICTED: U-box domain-containing protein 3 [Cucumis sativus]	[more]
gi\|659100738\|ref\|XP_008451242.1\|	2.7e-22	49.62	PREDICTED: U-box domain-containing protein 3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.388400.1	Cucsa.388400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 107..162 score: 5.
None	No IPR available	PANTHER	PTHR23315	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	coord: 1..108 score: 4.4
None	No IPR available	PANTHER	PTHR23315:SF119	U-BOX DOMAIN-CONTAINING PROTEIN 3	coord: 1..108 score: 4.4
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 132..163 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.388400	Cucumber (Chinese Long) v3	cgycucB590
Cucsa.388400	Watermelon (97103) v2	cgywmbB670
Cucsa.388400	Wax gourd	cgywgoB778
Cucsa.388400	Cucurbita maxima (Rimu)	cgycmaB1077
Cucsa.388400	Cucurbita maxima (Rimu)	cgycmaB1079
Cucsa.388400	Cucurbita moschata (Rifu)	cgycmoB1076
Cucsa.388400	Cucurbita moschata (Rifu)	cgycmoB1078
Cucsa.388400	Melon (DHL92) v3.5.1	cgymeB636
Cucsa.388400	Wild cucumber (PI 183967)	cgycpiB574
Cucsa.388400	Cucumber (Chinese Long) v2	cgycuB545
Cucsa.388400	Melon (DHL92) v3.5.1	cgymeB639
Cucsa.388400	Watermelon (Charleston Gray)	cgywcgB667
Cucsa.388400	Watermelon (97103) v1	cgywmB702
Cucsa.388400	Cucurbita pepo (Zucchini)	cgycpeB1027
Cucsa.388400	Cucurbita pepo (Zucchini)	cgycpeB1032
Cucsa.388400	Bottle gourd (USVL1VR-Ls)	cgylsiB631
Cucsa.388400	Melon (DHL92) v3.6.1	cgymedB631
Cucsa.388400	Melon (DHL92) v3.6.1	cgymedB633
Cucsa.388400	Silver-seed gourd	carcgyB0013
Cucsa.388400	Silver-seed gourd	carcgyB0104