Cucsa.388270 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.388270
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionPhotosystem II reaction center protein I
Locationscaffold03967 : 711930 .. 712459 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTATGCCAGGAATACCTCTATTCTTTTGTTTGGCAAGCTGCTGTAAGCTTTCGATGATATTTTTAATACTGTCCGAGACAAATTCATGATTAACTAGGAAAAAAAAAAAGATTCTAACTAGTTATAAGATCAAATAAGTTGTACATTCAGTCTTAAGCTTTAAGTTGAATCCAATATAGAAATTCTTCTATAGCTTTGATAAATCTGGATCACTCACATTTTATTATTCTTACTTTTTTCCTTTGAACGACCATGTTAGAGTCCCTCACAATATAAAATTGTGGGTATGAAATCCAATTTTGAGTAATCAAGGACTCAACTCTTTAAATTTTTTTTCTATTTTTAGAAATAACTTCACTCCATTTCTTGGTGTCAAAACACATTAAAATAGAATAGATGATCTTGGAGATTGTGTAATGCTTACTCTCAAACTATTTGTTTATACCGTAGTTATATTCTTTGTTTCTCTCTTCATTTTCGGATTCCTATCTAATGACCACGGACGTAATCCGGAGCGTAAAGAATAA

mRNA sequence

ATGTTATGCCAGGAATACCTCTATTCTTTTGTTTGGCAAGCTGCTAATAGATGATCTTGGAGATTGTGTAATGCTTACTCTCAAACTATTTGTTTATACCGTAGTTATATTCTTTGTTTCTCTCTTCATTTTCGGATTCCTATCTAATGACCACGGACGTAATCCGGAGCGTAAAGAATAA

Coding sequence (CDS)

ATGTTATGCCAGGAATACCTCTATTCTTTTGTTTGGCAAGCTGCTAATAGATGATCTTGGAGATTGTGTAATGCTTACTCTCAAACTATTTGTTTATACCGTAGTTATATTCTTTGTTTCTCTCTTCATTTTCGGATTCCTATCTAATGACCACGGACGTAATCCGGAGCGTAAAGAATAA

Protein sequence

CYARNTSILLFGKLLIDDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDHGRNPERKE*
Homology
[Close]
BLAST of Cucsa.388270 vs. Swiss-Prot
Match: PSBI_CRYJA (Photosystem II reaction center protein I OS=Cryptomeria japonica GN=psbI PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-11
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 24 MLTLKLFVYTVVIFFVSLFIFGFLSNDHGRNPERKE 60
          MLTLKLFVYTVVIFFVSLFIFGFLSND GRNP RKE
Sbjct: 1  MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRKE 36

[Close]
BLAST of Cucsa.388270 vs. Swiss-Prot
Match: PSBI_CHAVU (Photosystem II reaction center protein I OS=Chara vulgaris GN=psbI PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.1e-11
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 24 MLTLKLFVYTVVIFFVSLFIFGFLSNDHGRNPERKE 60
          MLTLKLFVYTVVIFF+SLFIFGFLSND GRNP RKE
Sbjct: 1  MLTLKLFVYTVVIFFISLFIFGFLSNDPGRNPGRKE 36

[Close]
BLAST of Cucsa.388270 vs. Swiss-Prot
Match: PSBI_HUPLU (Photosystem II reaction center protein I OS=Huperzia lucidula GN=psbI PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.1e-11
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 24 MLTLKLFVYTVVIFFVSLFIFGFLSNDHGRNPERKE 60
          MLTLKLFVYTVVIFFVSLF+FGFLSND GRNP RKE
Sbjct: 1  MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36

[Close]
BLAST of Cucsa.388270 vs. Swiss-Prot
Match: PSBI_ANGEV (Photosystem II reaction center protein I OS=Angiopteris evecta GN=psbI PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.1e-11
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 24 MLTLKLFVYTVVIFFVSLFIFGFLSNDHGRNPERKE 60
          MLTLKLFVYTVVIFFVSLF+FGFLSND GRNP RKE
Sbjct: 1  MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36

[Close]
BLAST of Cucsa.388270 vs. Swiss-Prot
Match: PSBI_PHYPA (Photosystem II reaction center protein I OS=Physcomitrella patens subsp. patens GN=psbI PE=3 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 2.1e-11
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 24 MLTLKLFVYTVVIFFVSLFIFGFLSNDHGRNPERKE 60
          MLTLKLFVYTVVIFFVSLF+FGFLSND GRNP RKE
Sbjct: 1  MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36

[Close]
BLAST of Cucsa.388270 vs. TrEMBL
Match: A0A0U3T8R1_9ROSI (Photosystem II reaction center protein I OS=Tetrastigma hemsleyanum GN=psbI PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.4e-14
Identity = 45/58 (77.59%), Postives = 47/58 (81.03%), Query Frame = 1 

Query: 2  YARNTSILLFGKLLIDDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDHGRNPERKE 60
          Y    SIL F K   +DLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSND GRNP R+E
Sbjct: 3  YKNGESILFFPK---NDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 57

[Close]
BLAST of Cucsa.388270 vs. TrEMBL
Match: W0USG0_SALMI (Photosystem II reaction center protein I OS=Salvia miltiorrhiza GN=psbI PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.7e-13
Identity = 41/50 (82.00%), Postives = 43/50 (86.00%), Query Frame = 1 

Query: 10 LFGKLLIDDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDHGRNPERKE 60
          LF   L + LGDCVMLTLKLFVYTVVIFFVSLFIFGFLSND GRNP R+E
Sbjct: 4  LFSFFLKNHLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 53

[Close]
BLAST of Cucsa.388270 vs. TrEMBL
Match: A0A0U1SRD3_MAGPY (Photosystem II reaction center protein I OS=Magnolia pyramidata GN=psbI PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.5e-13
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 1 

Query: 17 DDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDHGRNPERKE 60
          +DLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSND GRNP R+E
Sbjct: 9  NDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 51

[Close]
BLAST of Cucsa.388270 vs. TrEMBL
Match: L7NNP1_MAGGA (Photosystem II reaction center protein I OS=Magnolia grandiflora GN=psbI PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.5e-13
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 1 

Query: 17 DDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDHGRNPERKE 60
          +DLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSND GRNP R+E
Sbjct: 9  NDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 51

[Close]
BLAST of Cucsa.388270 vs. TrEMBL
Match: A0A0U1SIQ5_9MAGN (Photosystem II reaction center protein I OS=Magnolia liliifera GN=psbI PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.5e-13
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 1 

Query: 17 DDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDHGRNPERKE 60
          +DLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSND GRNP R+E
Sbjct: 9  NDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 51

[Close]
BLAST of Cucsa.388270 vs. TAIR10
Match: ATCG00080.1 (ATCG00080.1 photosystem II reaction center protein I)

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-12
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 24 MLTLKLFVYTVVIFFVSLFIFGFLSNDHGRNPERKE 60
          MLTLKLFVYTVVIFFVSLFIFGFLSND GRNP R+E
Sbjct: 1  MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]
BLAST of Cucsa.388270 vs. NCBI nr
Match: gi|1002161108|ref|YP_009231232.1| (photosystem II protein I (chloroplast) [Tetrastigma hemsleyanum])

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-14
Identity = 45/58 (77.59%), Postives = 47/58 (81.03%), Query Frame = 1 

Query: 2  YARNTSILLFGKLLIDDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDHGRNPERKE 60
          Y    SIL F K   +DLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSND GRNP R+E
Sbjct: 3  YKNGESILFFPK---NDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 57

[Close]
BLAST of Cucsa.388270 vs. NCBI nr
Match: gi|573461935|emb|CCQ71604.1| (photosystem II protein I (chloroplast) [Salvia miltiorrhiza])

HSP 1 Score: 82.0 bits (201), Expect = 3.8e-13
Identity = 41/50 (82.00%), Postives = 43/50 (86.00%), Query Frame = 1 

Query: 10 LFGKLLIDDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDHGRNPERKE 60
          LF   L + LGDCVMLTLKLFVYTVVIFFVSLFIFGFLSND GRNP R+E
Sbjct: 4  LFSFFLKNHLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 53

[Close]
BLAST of Cucsa.388270 vs. NCBI nr
Match: gi|910750169|gb|AKU47116.1| (photosystem II protein I (chloroplast) [Ananas comosus])

HSP 1 Score: 81.6 bits (200), Expect = 5.0e-13
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 1 

Query: 17 DDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDHGRNPERKE 60
          +DLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSND GRNP R+E
Sbjct: 10 NDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 52

[Close]
BLAST of Cucsa.388270 vs. NCBI nr
Match: gi|114107030|ref|YP_740186.1| (photosystem II protein I [Liriodendron tulipifera])

HSP 1 Score: 81.6 bits (200), Expect = 5.0e-13
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 1 

Query: 17 DDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDHGRNPERKE 60
          +DLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSND GRNP R+E
Sbjct: 9  NDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 51

[Close]
BLAST of Cucsa.388270 vs. NCBI nr
Match: gi|342316189|ref|YP_004769698.1| (photosystem II protein I [Magnolia kwangsiensis])

HSP 1 Score: 81.6 bits (200), Expect = 5.0e-13
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 1 

Query: 17 DDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDHGRNPERKE 60
          +DLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSND GRNP R+E
Sbjct: 9  NDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 51

The following BLAST results are available for this feature:
BLAST of Cucsa.388270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSBI_CRYJA1.6e-1194.44Photosystem II reaction center protein I OS=Cryptomeria japonica GN=psbI PE=3 SV... [more]
PSBI_CHAVU2.1e-1191.67Photosystem II reaction center protein I OS=Chara vulgaris GN=psbI PE=3 SV=1[more]
PSBI_HUPLU2.1e-1191.67Photosystem II reaction center protein I OS=Huperzia lucidula GN=psbI PE=3 SV=1[more]
PSBI_ANGEV2.1e-1191.67Photosystem II reaction center protein I OS=Angiopteris evecta GN=psbI PE=3 SV=1[more]
PSBI_PHYPA2.1e-1191.67Photosystem II reaction center protein I OS=Physcomitrella patens subsp. patens ... [more]
BLAST of Cucsa.388270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0U3T8R1_9ROSI1.4e-1477.59Photosystem II reaction center protein I OS=Tetrastigma hemsleyanum GN=psbI PE=3... [more]
W0USG0_SALMI2.7e-1382.00Photosystem II reaction center protein I OS=Salvia miltiorrhiza GN=psbI PE=3 SV=... [more]
A0A0U1SRD3_MAGPY3.5e-1390.70Photosystem II reaction center protein I OS=Magnolia pyramidata GN=psbI PE=3 SV=... [more]
L7NNP1_MAGGA3.5e-1390.70Photosystem II reaction center protein I OS=Magnolia grandiflora GN=psbI PE=3 SV... [more]
A0A0U1SIQ5_9MAGN3.5e-1390.70Photosystem II reaction center protein I OS=Magnolia liliifera GN=psbI PE=3 SV=1[more]
BLAST of Cucsa.388270 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00080.12.6e-1291.67ATCG00080.1 photosystem II reaction center protein I[more]
BLAST of Cucsa.388270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1002161108|ref|YP_009231232.1|2.0e-1477.59photosystem II protein I (chloroplast) [Tetrastigma hemsleyanum][more]
gi|573461935|emb|CCQ71604.1|3.8e-1382.00photosystem II protein I (chloroplast) [Salvia miltiorrhiza][more]
gi|910750169|gb|AKU47116.1|5.0e-1390.70photosystem II protein I (chloroplast) [Ananas comosus][more]
gi|114107030|ref|YP_740186.1|5.0e-1390.70photosystem II protein I [Liriodendron tulipifera][more]
gi|342316189|ref|YP_004769698.1|5.0e-1390.70photosystem II protein I [Magnolia kwangsiensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003686PSII_PsbI
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0009539photosystem II reaction center
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009539 photosystem II reaction center
cellular_component GO:0016020 membrane
cellular_component GO:0009523 photosystem II
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.388270.1Cucsa.388270.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003686Photosystem II PsbIHAMAPMF_01316PSII_PsbIcoord: 24..59
score: 16
IPR003686Photosystem II PsbIPFAMPF02532PsbIcoord: 24..59
score: 8.4
NoneNo IPR availablePANTHERPTHR35772FAMILY NOT NAMEDcoord: 24..59
score: 2.1
NoneNo IPR availablePANTHERPTHR35772:SF1PHOTOSYSTEM II REACTION CENTER PROTEIN Icoord: 24..59
score: 2.1
NoneNo IPR availableunknownSSF161041Photosystem II reaction center protein I, PsbIcoord: 24..58
score: 2.75

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.388270Cucurbita maxima (Rimu)cgycmaB1077
Cucsa.388270Cucurbita maxima (Rimu)cgycmaB1079
Cucsa.388270Cucurbita moschata (Rifu)cgycmoB1076
Cucsa.388270Cucurbita moschata (Rifu)cgycmoB1078
Cucsa.388270Wild cucumber (PI 183967)cgycpiB574
Cucsa.388270Cucumber (Chinese Long) v2cgycuB545
Cucsa.388270Melon (DHL92) v3.5.1cgymeB639
Cucsa.388270Watermelon (Charleston Gray)cgywcgB667
Cucsa.388270Watermelon (97103) v1cgywmB702
Cucsa.388270Cucurbita pepo (Zucchini)cgycpeB1027
Cucsa.388270Cucurbita pepo (Zucchini)cgycpeB1032
Cucsa.388270Bottle gourd (USVL1VR-Ls)cgylsiB631
Cucsa.388270Melon (DHL92) v3.6.1cgymedB631
Cucsa.388270Melon (DHL92) v3.6.1cgymedB633
Cucsa.388270Silver-seed gourdcarcgyB0013
Cucsa.388270Silver-seed gourdcarcgyB0104
Cucsa.388270Cucumber (Chinese Long) v3cgycucB590
Cucsa.388270Watermelon (97103) v2cgywmbB670
Cucsa.388270Wax gourdcgywgoB778