Cucsa.387770 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.387770
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionEPIDERMAL PATTERNING FACTOR-like protein 9
Locationscaffold03967 : 124049 .. 125531 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTTTCCTTCAAAAACCTTCTCTTCTCTTTTTCTTTTCTCTTATCCTCTCTTTTCCAATGGCAAAAGCTGCAAAACCACTTTCAGTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAACCCTATTTATTACCTCTCTTTTCTCAACAATGGCAGTGCAAGGTCCCTCTCCCTCTTATCTCTTTCTCTTTTTCTCCTCATTCATCTTCTCACCTTTTTCACTCACATGACCTTTTTCTTCTCTTTTTTTGGTTCCAGGATTCTCCACTCGAGATCGGCCAGTACCCCAATTCTCTTCTCTACAACCAACAATACTCCCACTCGAGGTTAGTCGCATTAGCCAAATAATCTCGTTTTTTTCTACCCTATATATTTCACATGAACAATACTGTTTTTCGAATTCTACCTTTAGTTTAATAATGTTATTGTTAATTTCTTTTTACTTCTACTAGTTTTGTTTTTGTGTTGGTATTGATTTAATTTTGTGTGTCATTTTCATTCAAATTTGAAATTTAAACTATAGTTTTTGGTGTAACTATCTTTTGTTTGGATTTAACCTTTTTTTTTAATTTATAAAAACAACTTATAGTGATTTTAATTCATGTTTTTAAATTACCCATTGATATAGGGGCTTTTTTATGTTTCTTTTTCTAATTAATAAAAATTTATATGAACGGTTGTTTCAATCTATATTTATAAAATAAGAGTTAACCAAAATATAATGAAATAAGCATAAAAAAAAATTCAAAATTTTGAATTCACTTTTATAGTGTAATTTATTTTACCTTTTTTCTATATATATATATAAAAAGAAAAGTAAAATAATATATTTTATTTTCATATATATAGAAACTTGAAAAACTTGTCTTTATAAAAGCTTTATTATATTAAGTTTCAACTTTCATTTCACAAACTACTTTAATCTCTATATACACATGCTCCAATTTTTAGATAGGAGAAAGAGACAAATATATATATATATATATGTTTTAACATTTTTAGTTAACATATATTATTATTTTTGGTCACTCTCATACAATCATCATAATTGAAAGAAAATGGAGGTATGAATGATATATAAGAGAAAGCAAATTGAAATGAAGGAGGAGTAGTAGTAATTAAAGAGCTAATTTAGAAGTGTTATATTTATGGAGTTTAGGGTAGAAAAGAAAGGTTGAGGAAATGGAGAAGGGTGATGATTGGTTCAACAGCACCAACATGTACTTACAATGAATGTAGAGGATGCAAATACAAATGTAGAGCTGAGCAAGTTCCTGTTGAAGGCAATGACCCAATTAATAGTGCTTATCACTATAGATGTGTTTGTCATAGGTAATTTCTTCATTACTTTTATATTTCAATCCTCTTCCAAATTTTGCTCTCTGCTTTTTCTCTTAATGTCTAATCTTTTTTCTTTTCTCAAATTCATTCTTTTTCTTTAAACTCTTCTTCTTATTATTGTTATTGTTATTGTAATTGTAA

mRNA sequence

TGTTTCCTTCAAAAACcttctcttctctttttcttttctcttatcctctcttttcCAATGGCAAAAGCTGCAAAACCACTTTCAGTActtcttcttcttcttcttcttcttcttcttctAACCCTATTTATTACCTCTCTTTTCTCAACAATGGCAGTGCAAGGATTCTCCACTCGAGATCGGCCAGTACCCCAATTCTCTTCTCTACAACCAACAATACTCCCACTCGAGGGTAGAAAAGAAAGGTTGAGGAAATGGAGAAGGGTGATGATTGGTTCAACAGCACCAACATGTACTTACAATGAATGTAGAGGATGCAAATACAAATGTAGAGCTGAGCAAGTTCCTGTTGAAGGCAATGACCCAATTAATAGTGCTTATCACTATAGATGTGTTTGTCATAGGTAATTTCTTCATTACTTTTATATTTCAATCCTCTTCCAAATTTTGCTCTCTGCTTTTTCTCTTAATGTCTAATCTTTTTTCTTTTCTCAAATTCATTCTTTTTCTTTAAACTCTTCTTCTTATTATTGTTATTGTTATTGTAATTGTAA

Coding sequence (CDS)

ATGGCAAAAGCTGCAAAACCACTTTCAGTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAACCCTATTTATTACCTCTCTTTTCTCAACAATGGCAGTGCAAGGATTCTCCACTCGAGATCGGCCAGTACCCCAATTCTCTTCTCTACAACCAACAATACTCCCACTCGAGGGTAGAAAAGAAAGGTTGAGGAAATGGAGAAGGGTGATGATTGGTTCAACAGCACCAACATGTACTTACAATGAATGTAGAGGATGCAAATACAAATGTAGAGCTGAGCAAGTTCCTGTTGAAGGCAATGACCCAATTAATAGTGCTTATCACTATAGATGTGTTTGTCATAGGTAA

Protein sequence

MAKAAKPLSVLLLLLLLLLLLTLFITSLFSTMAVQGFSTRDRPVPQFSSLQPTILPLEGRKERLRKWRRVMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR*
Homology
[Close]
BLAST of Cucsa.387770 vs. Swiss-Prot
Match: EPFL9_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Arabidopsis thaliana GN=EPFL9 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.9e-26
Identity = 61/111 (54.95%), Postives = 70/111 (63.06%), Query Frame = 1 

Query: 6   KPLSVLLLLLLLLLLLTLFITSLFSTMAVQGFSTRDRPVPQFSSLQPTILPLEGRKERLR 65
           KP  + +  LL  LLL  ++            ++R R +    SL P +  L  R     
Sbjct: 9   KPRCITIFFLLFALLLGNYVVQ----------ASRPRSIENTVSLLPQVHLLNSR----- 68

Query: 66  KWRRVMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 117
             RR MIGSTAPTCTYNECRGC+YKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 69  --RRHMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYRCVCHR 102

[Close]
BLAST of Cucsa.387770 vs. TrEMBL
Match: A0A0A0KA17_CUCSA (EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Cucumis sativus GN=Csa_7G368090 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.5e-44
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 

Query: 32  MAVQGFSTRDRPVPQFSSLQPTILPLEGRKERLRKWRRVMIGSTAPTCTYNECRGCKYKC 91
           MAVQGFSTRDRPVPQFSSLQPTILPLEGRKERLRKWRRVMIGSTAPTCTYNECRGCKYKC
Sbjct: 1   MAVQGFSTRDRPVPQFSSLQPTILPLEGRKERLRKWRRVMIGSTAPTCTYNECRGCKYKC 60

Query: 92  RAEQVPVEGNDPINSAYHYRCVCHR 117
           RAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  RAEQVPVEGNDPINSAYHYRCVCHR 85

[Close]
BLAST of Cucsa.387770 vs. TrEMBL
Match: A0A0B2PPB1_GLYSO (EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Glycine soja GN=glysoja_026670 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-24
Identity = 63/104 (60.58%), Postives = 72/104 (69.23%), Query Frame = 1 

Query: 15  LLLLLLLTLFITSLFSTMAVQGFSTRDRPVPQFSSLQPTILPLEGRKE--RLRKWRRVMI 74
           ++ LLL TL + S F+       S    P PQ    +P+   LE   E  ++R  RR+MI
Sbjct: 79  VVFLLLFTLILASKFTQGIRTEESVSQSPQPQ---REPS---LEDGNEAWKMRNSRRLMI 138

Query: 75  GSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 117
           GSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINS YHYRCVCHR
Sbjct: 139 GSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSPYHYRCVCHR 176

[Close]
BLAST of Cucsa.387770 vs. TrEMBL
Match: A0A0D2SE80_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G158800 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-24
Identity = 61/105 (58.10%), Postives = 68/105 (64.76%), Query Frame = 1 

Query: 15  LLLLLLLTLFITSLFSTMAVQGFSTRDRPVPQFSSLQ---PTILPLEGRKERLRKWRRVM 74
           L L  L  LF T   +  A+QG  T    +P    +    P  L      +  R  RR+M
Sbjct: 4   LNLSCLHMLFFTFFLAAHAIQGSRTTQVILPFLQGVSFSPPWDLQSSNEAKMKRNSRRLM 63

Query: 75  IGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 117
           IGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHY+CVCHR
Sbjct: 64  IGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVCHR 108

[Close]
BLAST of Cucsa.387770 vs. TrEMBL
Match: I1KYZ9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G345100 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-24
Identity = 63/104 (60.58%), Postives = 72/104 (69.23%), Query Frame = 1 

Query: 15  LLLLLLLTLFITSLFSTMAVQGFSTRDRPVPQFSSLQPTILPLEGRKE--RLRKWRRVMI 74
           ++ LLL TL + S F+       S    P PQ    +P+   LE   E  ++R  RR+MI
Sbjct: 79  VVFLLLFTLILASKFTQGIRTEESVSQSPQPQ---REPS---LEDGNEAWKMRNSRRLMI 138

Query: 75  GSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 117
           GSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINS YHYRCVCHR
Sbjct: 139 GSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSPYHYRCVCHR 176

[Close]
BLAST of Cucsa.387770 vs. TrEMBL
Match: C6TFP2_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-24
Identity = 63/104 (60.58%), Postives = 72/104 (69.23%), Query Frame = 1 

Query: 15  LLLLLLLTLFITSLFSTMAVQGFSTRDRPVPQFSSLQPTILPLEGRKE--RLRKWRRVMI 74
           ++ LLL TL + S F+       S    P PQ    +P+   LE   E  ++R  RR+MI
Sbjct: 79  VVFLLLFTLILASKFTQGIRTEESVSQSPQPQ---REPS---LEDGNEAWKMRNSRRLMI 138

Query: 75  GSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 117
           GSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINS YHYRCVCHR
Sbjct: 139 GSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSPYHYRCVCHR 176

[Close]
BLAST of Cucsa.387770 vs. TAIR10
Match: AT4G12970.1 (AT4G12970.1 stomagen)

HSP 1 Score: 118.2 bits (295), Expect = 3.3e-27
Identity = 61/111 (54.95%), Postives = 70/111 (63.06%), Query Frame = 1 

Query: 6   KPLSVLLLLLLLLLLLTLFITSLFSTMAVQGFSTRDRPVPQFSSLQPTILPLEGRKERLR 65
           KP  + +  LL  LLL  ++            ++R R +    SL P +  L  R     
Sbjct: 9   KPRCITIFFLLFALLLGNYVVQ----------ASRPRSIENTVSLLPQVHLLNSR----- 68

Query: 66  KWRRVMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 117
             RR MIGSTAPTCTYNECRGC+YKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 69  --RRHMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYRCVCHR 102

[Close]
BLAST of Cucsa.387770 vs. NCBI nr
Match: gi|659116452|ref|XP_008458078.1| (PREDICTED: uncharacterized protein LOC103497615 [Cucumis melo])

HSP 1 Score: 191.8 bits (486), Expect = 6.7e-46
Identity = 101/118 (85.59%), Postives = 104/118 (88.14%), Query Frame = 1 

Query: 1   MAKAAKPLSVLLLLLLLLLLLTLFITSLFSTMAVQGFSTRDRPVPQ-FSSLQPTILPLEG 60
           MAKAAKP SVLLLLLLLL   TLFITSLFSTMAVQG STRD P+PQ F S+Q T LP EG
Sbjct: 1   MAKAAKPFSVLLLLLLLL---TLFITSLFSTMAVQGSSTRD-PLPQLFFSVQATQLPFEG 60

Query: 61  RKERLRKW-RRVMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 117
           RKER R W RR+MIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  RKERRRNWGRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 114

[Close]
BLAST of Cucsa.387770 vs. NCBI nr
Match: gi|700189423|gb|KGN44656.1| (EPIDERMAL PATTERNING FACTOR-like protein 9 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 2.1e-44
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 

Query: 32  MAVQGFSTRDRPVPQFSSLQPTILPLEGRKERLRKWRRVMIGSTAPTCTYNECRGCKYKC 91
           MAVQGFSTRDRPVPQFSSLQPTILPLEGRKERLRKWRRVMIGSTAPTCTYNECRGCKYKC
Sbjct: 1   MAVQGFSTRDRPVPQFSSLQPTILPLEGRKERLRKWRRVMIGSTAPTCTYNECRGCKYKC 60

Query: 92  RAEQVPVEGNDPINSAYHYRCVCHR 117
           RAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  RAEQVPVEGNDPINSAYHYRCVCHR 85

[Close]
BLAST of Cucsa.387770 vs. NCBI nr
Match: gi|694411838|ref|XP_009334266.1| (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Pyrus x bretschneideri])

HSP 1 Score: 128.3 bits (321), Expect = 9.1e-27
Identity = 69/121 (57.02%), Postives = 80/121 (66.12%), Query Frame = 1 

Query: 1   MAKAAKPLSVLLLLLLLLLLLTLFITSLFSTMAVQGFSTRDRPVPQ------FSSLQPTI 60
           MAK+ +P+          LLL  FI  +F+   VQG  T+   +P       FS+ Q   
Sbjct: 1   MAKSTRPI----------LLLPFFIILVFAAYVVQGSRTQVAELPHSQRVNDFSTSQGEQ 60

Query: 61  LPLEGRKERLRKWRRVMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVC 116
           L  +  KER+   RR+MIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVC
Sbjct: 61  LK-QRSKERMNYVRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVC 110

[Close]
BLAST of Cucsa.387770 vs. NCBI nr
Match: gi|657981117|ref|XP_008382569.1| (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Malus domestica])

HSP 1 Score: 126.7 bits (317), Expect = 2.6e-26
Identity = 69/121 (57.02%), Postives = 79/121 (65.29%), Query Frame = 1 

Query: 1   MAKAAKPLSVLLLLLLLLLLLTLFITSLFSTMAVQGFSTRDRPVPQ------FSSLQPTI 60
           MAK+ +P           LLL  FI  +F+   VQG  T+   +P       FS+ Q   
Sbjct: 1   MAKSTRPK----------LLLPFFIILVFAAYVVQGSRTQVAELPHGQRVNDFSTSQGEQ 60

Query: 61  LPLEGRKERLRKWRRVMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVC 116
           L  +  KER+   RR+MIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVC
Sbjct: 61  LK-QRSKERMNYVRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVC 110

[Close]
BLAST of Cucsa.387770 vs. NCBI nr
Match: gi|694393498|ref|XP_009372185.1| (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Pyrus x bretschneideri])

HSP 1 Score: 125.9 bits (315), Expect = 4.5e-26
Identity = 68/121 (56.20%), Postives = 79/121 (65.29%), Query Frame = 1 

Query: 1   MAKAAKPLSVLLLLLLLLLLLTLFITSLFSTMAVQGFSTRDRPVPQ------FSSLQPTI 60
           MAK+ +P+          LLL  FI  + +   VQG  T+   +P       FS+ Q   
Sbjct: 1   MAKSTRPI----------LLLPFFIILVLAAYVVQGSRTQVAELPHSQRVNDFSTSQGEQ 60

Query: 61  LPLEGRKERLRKWRRVMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVC 116
           L  +  KER+   RR+MIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVC
Sbjct: 61  LK-QRSKERMNYVRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVC 110

The following BLAST results are available for this feature:
BLAST of Cucsa.387770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
EPFL9_ARATH5.9e-2654.95EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Arabidopsis thaliana GN=EPFL9 PE=1... [more]
BLAST of Cucsa.387770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KA17_CUCSA1.5e-44100.00EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Cucumis sativus GN=Csa_7G368090 PE... [more]
A0A0B2PPB1_GLYSO1.7e-2460.58EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Glycine soja GN=glysoja_026670 PE=... [more]
A0A0D2SE80_GOSRA1.7e-2458.10Uncharacterized protein OS=Gossypium raimondii GN=B456_007G158800 PE=4 SV=1[more]
I1KYZ9_SOYBN1.7e-2460.58Uncharacterized protein OS=Glycine max GN=GLYMA_08G345100 PE=4 SV=1[more]
C6TFP2_SOYBN1.7e-2460.58Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
BLAST of Cucsa.387770 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G12970.13.3e-2754.95 stomagen[more]
BLAST of Cucsa.387770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659116452|ref|XP_008458078.1|6.7e-4685.59PREDICTED: uncharacterized protein LOC103497615 [Cucumis melo][more]
gi|700189423|gb|KGN44656.1|2.1e-44100.00EPIDERMAL PATTERNING FACTOR-like protein 9 [Cucumis sativus][more]
gi|694411838|ref|XP_009334266.1|9.1e-2757.02PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Pyrus x bretschneideri][more]
gi|657981117|ref|XP_008382569.1|2.6e-2657.02PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Malus domestica][more]
gi|694393498|ref|XP_009372185.1|4.5e-2656.20PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
Vocabulary: Biological Process
TermDefinition
GO:2000123positive regulation of stomatal complex development
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:2000123 positive regulation of stomatal complex development
biological_process GO:0010375 stomatal complex patterning
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.387770.1Cucsa.387770.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37239FAMILY NOT NAMEDcoord: 7..116
score: 7.5
NoneNo IPR availablePANTHERPTHR37239:SF1EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 9coord: 7..116
score: 7.5