Cucsa.383210 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATCTATGTTCGGGATAACGGAAAAaGAGCGGAAGTGTCTATAACTAATTCTTTTTGCAGCCTCATGGAGGTGGACGAAGGCGATAAATGGGTGTTATCTATAGTAAATGGCTCTCCGGCACCACTACAAGTGGATGATACCACCTTGGTGCGTAGGAGTTGGCTAATTGATGGTCATCCTATGGGAGCAAAAGCTCCTATAAAAATTTAATGATCAGTTGGTGTTCATGGAATGTGTGGGGTCTTAGCCCTGTAAGTGTAGAGCGGTGATGAATTTTTTAGTAGTGTCTATGGTGGGTTTTTGTTGTATCCTGGAAACTAAAGTCCGGGAAGAGAATTTTAATTCTATCTCTGGAAGGTTTGGTGATTCGTGGGGTTTCATGAGTAATTACAGTAATAGTGGTATAGGTCGTATGTGGTTATGTGGAAAAGTGACAGATTCATGTTCACCCTAGTGAGATTGCTGACCAGTTATATTTGGGTTGGTAACAGATTTGATATCAGGGGTTAGCATAGGGGTTCTTTGTGTGTATGCCTCTAATAATAATATTGAGAGACGTTTGTTGTGGCAGCGTATAACTGAGATTTCTGCTGGTTGGATGGGGCAGGGTACGGTCATTAGAGACTTTAATACCATTAGAATTCATTATGAAGCCTTTGGTGGAGCTCCAAATATTGGAGTTATGGAGGAATTTGACTTGGCTATTCGCAAGTCTGACCTTGTTGAACCTTCAGTTCAGGGTAATTGGTTTACCTGAACTAGTAAGGTTCATGGTTCTGGTTTGATGAGAAGACTTGATCGTATTCTGGTTAATGATGAGGGGCACAATGCTTGGCCTAACATGAGAGTTGACATCCTTCCTTGGGGTATTTCTGATCACTCTCCTATCCTTGTTTACCCCAGCTATCAGCAGAGATAACATGTGGTTTCTTTCCATTTCTTTAACCATTGGGTTGAGGAAGATTCTTTTTTTAATGTTGTCTCTTCGGTTTGGGCCAAAGATACTGGGGTATCGTCGATTGAGAATTTTGTGAAAAATTTAAGAAATCTCAAGTCCGTTCTCTATATCCATTTTGGTAAGCACATTTGAAACATTAGTGAGGATGTTCGTCTTGCTAAAGTTACCATGGACATAGCTTAGAGAGAGGTGGAGATTATTCCTCTGTCTGAGGAGCTGAGTAATCAAGCGAGCTTAGCCACAGTAAATTTTTGGAGAACGGCTAGAGTGGAGGAAGCTGTAATGCGCCAAAAGTTCAGAATACGGTGGCTGAAATTAGGTGACCAGAATACTGCCGTCTTTCATATGACTGTTAGGTCTCGCCTTCACAGTAATACTTTGCGATCTGTGGTTCATCCGGATGGTACTCGGTTGACTAACCATGAAGAGGTGACTCAAGAGAGCTCTCTACTTGTGTTGAGAATATAGTTCATTTAGATGGTCTGAGAGTGTTGTCAGGTCTTACATGCACCAATTGGAAGGGAGGAGGTGAGAAGAGTTCTTTTTtCCATGGACAGTGGAAAGGCTCCAGGACCTGATGGGTATTCAGTGGGTTTCTTCAAAGGAGCTTGGACTGTGGTTGAGGAGGATTTCTGTGATGTCGTCTTACACTTCTTTGAGACTAGTTATTTCCCTCAAGGGGTGAATACAACTATCATTACTCTTATCCCTAAAAGGAACGGTGTTGACCGTATGGAAGATTTCAGGCCTATATCTTGTTCTAACGTTATCTGCAAGTGTATCTAAAAAATATTGGTCGATAGGCTTCCTTCATTTATCAGTGGCAATCAATCGACTTTCATCCCAGTGAGGAGTATTGTTGATAATATTCTTCTTTGTTAGGAGCTTGTTGGGGGATACTATAAAAACACCGAAAAACCTCGGTGTACTATGAAGGTTGATCTCCAAAAAGCATATGATTCTATCAATTGAGATTTCCTCTTTGGTTTGTTGATAGCTAATGGTACTCCTTTGAGATTTGTGAGTTTGATTAGAGCTTGTGTCACTTCTCTGATGTTTTCTATTATGATTAATGGTTCATTGGAAGGTTTTTTTtATAGGAGGAAAGGACTAAGACATGATGATCCATTATCTCTGTCCTATTTGTGATGGCCATGGAGGTTATATCTCGCATGTTGAACCGTCCACCTTAGAATTTTTAGTTCCACCAATTTTGTGAGAAGGTTAGTTTAACTCATCTTACTTTTGCGGATGATCTTATGATTTTTTGTGCTGCTGATGAATTTTCTATGAGCTTCATAAAAGAGACTATTCAGAGGTTTGGTGAGTTATCAGGAATTTTTGCTAATCGTGGAAAAAACTCTATTTTtCTTGTGGGGGTTAATAGTGCGGAAGCTTCTCATCTAGCTGCTAGTATGGGTTTTACCATTAGTCATCTCTCTATTCATTATCTTGGGCTTCCTTTACTCTCACGAAGGTTACGGAGTTTTGATTGTGATCCTCTTATTCAGCGGATAACCAGTCATATTCGGTCTTGGTCTGCTAGAGTGTTATCTTTTGCAGATAGACTTCAGCTTGTTCGCTCTATTCTTCGTAGTCTACTGGTATATTGGGCTAGTGTGTTCGTGCTACCTGCGAAAGTCCACATAAATGTTGATAAGATTCTGCATTCTTATCTTTGGAGATGCAAGGCGGAGGGTAGAGGTGGTGCTAAGGTTGCTTGGGATAAGGTTTGTCTTCCTTTTGATGAGGGCGGTCTTTGCTATTCGCGACGG atgatctatgttcgggataacggaaaaagagcggaagtgtctataactaattctttttgcagcctcatggaggtggacgaaggcgataaatgggtgttatctatagtaaatggctctccggcaccactacaagtggatgataccaccttggtgcatttgatatcaggggttagcataggggttctttgtgtgtatgcctctaataataatattgagagacgtttgttgtggcagcgtataactgagatttctgctggttggatggggcagggtacggtcattagagactttaataccattagaattcattatgaagcctttggtggagctccaaatattggagttatggaggaatttgacttggctattcgcaagtctgaccttgttgaaccttcagttcaggaggtggagattattcctctgtctgaggagctgagtaatcaagcgagcttagccacagtaaatttttggagaacggctagagtggaggaagctgtaatgcgccaaaagttcagaatacggtggctgaaattaggtgaccagaatactgccgtctttcatatgactgttaggtctcgccttcacagtaatactttgcgatctgtggttcatccggatggtactcggttgactaaccatgaagaggtcttacatgcaccaattggaagggaggaggtgagaagagttcttttttccatggacagtggaaaggctccaggacctgatgggtattcagtgggtttcttcaaaggagcttggactgtggttgaggaggatttctgtgatgtcgtcttacacttctttgagactagttatttccctcaaggggtgaatacaactatcattactcttatccctaaaaggaacggtgttgaccgtatggaagatttcaggcctatatcttgttctaacttccaccaattttgtgagaaggttagtttaactcatcttacttttgcggatgatcttatgattttttgtgctgctgatgaattttctatgagcttcataaaagagactattcagaggtttggtgagttatcaggaatttttgctaatcgtggaaaaaactctatttttcttgtgggggttaatagtgcggaagcttctcatctagctgctagtatgggttttaccattagtcatctctctattcattatcttgggcttcctttactctcacgaaggttacggagttttgattgtgatcctcttattcagcggataaccagtcatattcggtcttggtctgctagagtgttatcttttgcagatagacttcagcttgttcgctctattcttcgtagtctactggtatattgggctagtgtgttcgtgctacctgcgaaagtccacataaatgttgataagattctgcattcttatctttggagatgcaaggcggagggtagaggtggtgctaaggttgcttgggataaggtttgtcttccttttgatgagggcggtctttgctattcgcgacgg ATGATCTATGTTCGGGATAACGGAAAAaGAGCGGAAGTGTCTATAACTAATTCTTTTTGCAGCCTCATGGAGGTGGACGAAGGCGATAAATGGGTGTTATCTATAGTAAATGGCTCTCCGGCACCACTACAAGTGGATGATACCACCTTGGTGCATTTGATATCAGGGGTTAGCATAGGGGTTCTTTGTGTGTATGCCTCTAATAATAATATTGAGAGACGTTTGTTGTGGCAGCGTATAACTGAGATTTCTGCTGGTTGGATGGGGCAGGGTACGGTCATTAGAGACTTTAATACCATTAGAATTCATTATGAAGCCTTTGGTGGAGCTCCAAATATTGGAGTTATGGAGGAATTTGACTTGGCTATTCGCAAGTCTGACCTTGTTGAACCTTCAGTTCAGGAGGTGGAGATTATTCCTCTGTCTGAGGAGCTGAGTAATCAAGCGAGCTTAGCCACAGTAAATTTTTGGAGAACGGCTAGAGTGGAGGAAGCTGTAATGCGCCAAAAGTTCAGAATACGGTGGCTGAAATTAGGTGACCAGAATACTGCCGTCTTTCATATGACTGTTAGGTCTCGCCTTCACAGTAATACTTTGCGATCTGTGGTTCATCCGGATGGTACTCGGTTGACTAACCATGAAGAGGTCTTACATGCACCAATTGGAAGGGAGGAGGTGAGAAGAGTTCTTTTTtCCATGGACAGTGGAAAGGCTCCAGGACCTGATGGGTATTCAGTGGGTTTCTTCAAAGGAGCTTGGACTGTGGTTGAGGAGGATTTCTGTGATGTCGTCTTACACTTCTTTGAGACTAGTTATTTCCCTCAAGGGGTGAATACAACTATCATTACTCTTATCCCTAAAAGGAACGGTGTTGACCGTATGGAAGATTTCAGGCCTATATCTTGTTCTAACTTCCACCAATTTTGTGAGAAGGTTAGTTTAACTCATCTTACTTTTGCGGATGATCTTATGATTTTTTGTGCTGCTGATGAATTTTCTATGAGCTTCATAAAAGAGACTATTCAGAGGTTTGGTGAGTTATCAGGAATTTTTGCTAATCGTGGAAAAAACTCTATTTTtCTTGTGGGGGTTAATAGTGCGGAAGCTTCTCATCTAGCTGCTAGTATGGGTTTTACCATTAGTCATCTCTCTATTCATTATCTTGGGCTTCCTTTACTCTCACGAAGGTTACGGAGTTTTGATTGTGATCCTCTTATTCAGCGGATAACCAGTCATATTCGGTCTTGGTCTGCTAGAGTGTTATCTTTTGCAGATAGACTTCAGCTTGTTCGCTCTATTCTTCGTAGTCTACTGGTATATTGGGCTAGTGTGTTCGTGCTACCTGCGAAAGTCCACATAAATGTTGATAAGATTCTGCATTCTTATCTTTGGAGATGCAAGGCGGAGGGTAGAGGTGGTGCTAAGGTTGCTTGGGATAAGGTTTGTCTTCCTTTTGATGAGGGCGGTCTTTGCTATTCGCGACGG MIYVRDNGKRAEVSITNSFCSLMEVDEGDKWVLSIVNGSPAPLQVDDTTLVHLISGVSIGVLCVYASNNNIERRLLWQRITEISAGWMGQGTVIRDFNTIRIHYEAFGGAPNIGVMEEFDLAIRKSDLVEPSVQEVEIIPLSEELSNQASLATVNFWRTARVEEAVMRQKFRIRWLKLGDQNTAVFHMTVRSRLHSNTLRSVVHPDGTRLTNHEEVLHAPIGREEVRRVLFSMDSGKAPGPDGYSVGFFKGAWTVVEEDFCDVVLHFFETSYFPQGVNTTIITLIPKRNGVDRMEDFRPISCSNFHQFCEKVSLTHLTFADDLMIFCAADEFSMSFIKETIQRFGELSGIFANRGKNSIFLVGVNSAEASHLAASMGFTISHLSIHYLGLPLLSRRLRSFDCDPLIQRITSHIRSWSARVLSFADRLQLVRSILRSLLVYWASVFVLPAKVHINVDKILHSYLWRCKAEGRGGAKVAWDKVCLPFDEGGLCYSRR
BLAST of Cucsa.383210 vs. TrEMBL
Match: Q9SL12_ARATH (Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=At2g05550 PE=4 SV=1) HSP 1 Score: 175.3 bits (443), Expect = 1.9e-40 Identity = 98/276 (35.51%), Postives = 154/276 (55.80%), Query Frame = 1
BLAST of Cucsa.383210 vs. TrEMBL
Match: F4NCG1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1) HSP 1 Score: 156.8 bits (395), Expect = 7.0e-35 Identity = 77/196 (39.29%), Postives = 117/196 (59.69%), Query Frame = 1
BLAST of Cucsa.383210 vs. TrEMBL
Match: F4NCG1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 1.4e-06 Identity = 28/89 (31.46%), Postives = 50/89 (56.18%), Query Frame = 1
HSP 2 Score: 40.4 bits (93), Expect = 7.3e+00 Identity = 18/57 (31.58%), Postives = 35/57 (61.40%), Query Frame = 1
HSP 3 Score: 154.8 bits (390), Expect = 2.7e-34 Identity = 74/186 (39.78%), Postives = 110/186 (59.14%), Query Frame = 1
BLAST of Cucsa.383210 vs. TrEMBL
Match: A0A0V0IYZ4_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 2.7e-10 Identity = 42/106 (39.62%), Postives = 61/106 (57.55%), Query Frame = 1
HSP 2 Score: 151.4 bits (381), Expect = 2.9e-33 Identity = 85/249 (34.14%), Postives = 136/249 (54.62%), Query Frame = 1
BLAST of Cucsa.383210 vs. TrEMBL
Match: Q9C6L3_ARATH (Putative uncharacterized protein F2J7.11 OS=Arabidopsis thaliana GN=F2J7.11 PE=4 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 5.0e-33 Identity = 75/187 (40.11%), Postives = 114/187 (60.96%), Query Frame = 1
BLAST of Cucsa.383210 vs. TAIR10
Match: AT3G24255.1 (AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein) HSP 1 Score: 107.1 bits (266), Expect = 3.2e-23 Identity = 54/130 (41.54%), Postives = 75/130 (57.69%), Query Frame = 1
BLAST of Cucsa.383210 vs. TAIR10
Match: AT1G43760.1 (AT1G43760.1 DNAse I-like superfamily protein) HSP 1 Score: 73.9 bits (180), Expect = 3.0e-13 Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 1
HSP 2 Score: 40.0 bits (92), Expect = 4.8e-03 Identity = 22/62 (35.48%), Postives = 33/62 (53.23%), Query Frame = 1
BLAST of Cucsa.383210 vs. NCBI nr
Match: gi|659126450|ref|XP_008463188.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]) HSP 1 Score: 294.3 bits (752), Expect = 4.0e-76 Identity = 171/293 (58.36%), Postives = 198/293 (67.58%), Query Frame = 1
BLAST of Cucsa.383210 vs. NCBI nr
Match: gi|659121154|ref|XP_008460525.1| (PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucumis melo]) HSP 1 Score: 269.2 bits (687), Expect = 1.4e-68 Identity = 136/187 (72.73%), Postives = 152/187 (81.28%), Query Frame = 1
BLAST of Cucsa.383210 vs. NCBI nr
Match: gi|923808393|ref|XP_013690018.1| (PREDICTED: uncharacterized protein LOC106393925 [Brassica napus]) HSP 1 Score: 215.3 bits (547), Expect = 2.4e-52 Identity = 106/299 (35.45%), Postives = 168/299 (56.19%), Query Frame = 1
BLAST of Cucsa.383210 vs. NCBI nr
Match: gi|727558453|ref|XP_010451418.1| (PREDICTED: uncharacterized protein LOC104733546 [Camelina sativa]) HSP 1 Score: 208.0 bits (528), Expect = 3.8e-50 Identity = 107/280 (38.21%), Postives = 160/280 (57.14%), Query Frame = 1
BLAST of Cucsa.383210 vs. NCBI nr
Match: gi|702284285|ref|XP_010046135.1| (PREDICTED: uncharacterized protein LOC104434998 [Eucalyptus grandis]) HSP 1 Score: 207.6 bits (527), Expect = 5.0e-50 Identity = 108/296 (36.49%), Postives = 164/296 (55.41%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |