Cucsa.383210 (gene) Cucumber (Gy14) v1

NameCucsa.383210
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionNon-ltr retrotransposon reverse transcriptase-like protein
Locationscaffold03882 : 201979 .. 204714 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCTATGTTCGGGATAACGGAAAAaGAGCGGAAGTGTCTATAACTAATTCTTTTTGCAGCCTCATGGAGGTGGACGAAGGCGATAAATGGGTGTTATCTATAGTAAATGGCTCTCCGGCACCACTACAAGTGGATGATACCACCTTGGTGCGTAGGAGTTGGCTAATTGATGGTCATCCTATGGGAGCAAAAGCTCCTATAAAAATTTAATGATCAGTTGGTGTTCATGGAATGTGTGGGGTCTTAGCCCTGTAAGTGTAGAGCGGTGATGAATTTTTTAGTAGTGTCTATGGTGGGTTTTTGTTGTATCCTGGAAACTAAAGTCCGGGAAGAGAATTTTAATTCTATCTCTGGAAGGTTTGGTGATTCGTGGGGTTTCATGAGTAATTACAGTAATAGTGGTATAGGTCGTATGTGGTTATGTGGAAAAGTGACAGATTCATGTTCACCCTAGTGAGATTGCTGACCAGTTATATTTGGGTTGGTAACAGATTTGATATCAGGGGTTAGCATAGGGGTTCTTTGTGTGTATGCCTCTAATAATAATATTGAGAGACGTTTGTTGTGGCAGCGTATAACTGAGATTTCTGCTGGTTGGATGGGGCAGGGTACGGTCATTAGAGACTTTAATACCATTAGAATTCATTATGAAGCCTTTGGTGGAGCTCCAAATATTGGAGTTATGGAGGAATTTGACTTGGCTATTCGCAAGTCTGACCTTGTTGAACCTTCAGTTCAGGGTAATTGGTTTACCTGAACTAGTAAGGTTCATGGTTCTGGTTTGATGAGAAGACTTGATCGTATTCTGGTTAATGATGAGGGGCACAATGCTTGGCCTAACATGAGAGTTGACATCCTTCCTTGGGGTATTTCTGATCACTCTCCTATCCTTGTTTACCCCAGCTATCAGCAGAGATAACATGTGGTTTCTTTCCATTTCTTTAACCATTGGGTTGAGGAAGATTCTTTTTTTAATGTTGTCTCTTCGGTTTGGGCCAAAGATACTGGGGTATCGTCGATTGAGAATTTTGTGAAAAATTTAAGAAATCTCAAGTCCGTTCTCTATATCCATTTTGGTAAGCACATTTGAAACATTAGTGAGGATGTTCGTCTTGCTAAAGTTACCATGGACATAGCTTAGAGAGAGGTGGAGATTATTCCTCTGTCTGAGGAGCTGAGTAATCAAGCGAGCTTAGCCACAGTAAATTTTTGGAGAACGGCTAGAGTGGAGGAAGCTGTAATGCGCCAAAAGTTCAGAATACGGTGGCTGAAATTAGGTGACCAGAATACTGCCGTCTTTCATATGACTGTTAGGTCTCGCCTTCACAGTAATACTTTGCGATCTGTGGTTCATCCGGATGGTACTCGGTTGACTAACCATGAAGAGGTGACTCAAGAGAGCTCTCTACTTGTGTTGAGAATATAGTTCATTTAGATGGTCTGAGAGTGTTGTCAGGTCTTACATGCACCAATTGGAAGGGAGGAGGTGAGAAGAGTTCTTTTTtCCATGGACAGTGGAAAGGCTCCAGGACCTGATGGGTATTCAGTGGGTTTCTTCAAAGGAGCTTGGACTGTGGTTGAGGAGGATTTCTGTGATGTCGTCTTACACTTCTTTGAGACTAGTTATTTCCCTCAAGGGGTGAATACAACTATCATTACTCTTATCCCTAAAAGGAACGGTGTTGACCGTATGGAAGATTTCAGGCCTATATCTTGTTCTAACGTTATCTGCAAGTGTATCTAAAAAATATTGGTCGATAGGCTTCCTTCATTTATCAGTGGCAATCAATCGACTTTCATCCCAGTGAGGAGTATTGTTGATAATATTCTTCTTTGTTAGGAGCTTGTTGGGGGATACTATAAAAACACCGAAAAACCTCGGTGTACTATGAAGGTTGATCTCCAAAAAGCATATGATTCTATCAATTGAGATTTCCTCTTTGGTTTGTTGATAGCTAATGGTACTCCTTTGAGATTTGTGAGTTTGATTAGAGCTTGTGTCACTTCTCTGATGTTTTCTATTATGATTAATGGTTCATTGGAAGGTTTTTTTtATAGGAGGAAAGGACTAAGACATGATGATCCATTATCTCTGTCCTATTTGTGATGGCCATGGAGGTTATATCTCGCATGTTGAACCGTCCACCTTAGAATTTTTAGTTCCACCAATTTTGTGAGAAGGTTAGTTTAACTCATCTTACTTTTGCGGATGATCTTATGATTTTTTGTGCTGCTGATGAATTTTCTATGAGCTTCATAAAAGAGACTATTCAGAGGTTTGGTGAGTTATCAGGAATTTTTGCTAATCGTGGAAAAAACTCTATTTTtCTTGTGGGGGTTAATAGTGCGGAAGCTTCTCATCTAGCTGCTAGTATGGGTTTTACCATTAGTCATCTCTCTATTCATTATCTTGGGCTTCCTTTACTCTCACGAAGGTTACGGAGTTTTGATTGTGATCCTCTTATTCAGCGGATAACCAGTCATATTCGGTCTTGGTCTGCTAGAGTGTTATCTTTTGCAGATAGACTTCAGCTTGTTCGCTCTATTCTTCGTAGTCTACTGGTATATTGGGCTAGTGTGTTCGTGCTACCTGCGAAAGTCCACATAAATGTTGATAAGATTCTGCATTCTTATCTTTGGAGATGCAAGGCGGAGGGTAGAGGTGGTGCTAAGGTTGCTTGGGATAAGGTTTGTCTTCCTTTTGATGAGGGCGGTCTTTGCTATTCGCGACGG

mRNA sequence

atgatctatgttcgggataacggaaaaagagcggaagtgtctataactaattctttttgcagcctcatggaggtggacgaaggcgataaatgggtgttatctatagtaaatggctctccggcaccactacaagtggatgataccaccttggtgcatttgatatcaggggttagcataggggttctttgtgtgtatgcctctaataataatattgagagacgtttgttgtggcagcgtataactgagatttctgctggttggatggggcagggtacggtcattagagactttaataccattagaattcattatgaagcctttggtggagctccaaatattggagttatggaggaatttgacttggctattcgcaagtctgaccttgttgaaccttcagttcaggaggtggagattattcctctgtctgaggagctgagtaatcaagcgagcttagccacagtaaatttttggagaacggctagagtggaggaagctgtaatgcgccaaaagttcagaatacggtggctgaaattaggtgaccagaatactgccgtctttcatatgactgttaggtctcgccttcacagtaatactttgcgatctgtggttcatccggatggtactcggttgactaaccatgaagaggtcttacatgcaccaattggaagggaggaggtgagaagagttcttttttccatggacagtggaaaggctccaggacctgatgggtattcagtgggtttcttcaaaggagcttggactgtggttgaggaggatttctgtgatgtcgtcttacacttctttgagactagttatttccctcaaggggtgaatacaactatcattactcttatccctaaaaggaacggtgttgaccgtatggaagatttcaggcctatatcttgttctaacttccaccaattttgtgagaaggttagtttaactcatcttacttttgcggatgatcttatgattttttgtgctgctgatgaattttctatgagcttcataaaagagactattcagaggtttggtgagttatcaggaatttttgctaatcgtggaaaaaactctatttttcttgtgggggttaatagtgcggaagcttctcatctagctgctagtatgggttttaccattagtcatctctctattcattatcttgggcttcctttactctcacgaaggttacggagttttgattgtgatcctcttattcagcggataaccagtcatattcggtcttggtctgctagagtgttatcttttgcagatagacttcagcttgttcgctctattcttcgtagtctactggtatattgggctagtgtgttcgtgctacctgcgaaagtccacataaatgttgataagattctgcattcttatctttggagatgcaaggcggagggtagaggtggtgctaaggttgcttgggataaggtttgtcttccttttgatgagggcggtctttgctattcgcgacgg

Coding sequence (CDS)

ATGATCTATGTTCGGGATAACGGAAAAaGAGCGGAAGTGTCTATAACTAATTCTTTTTGCAGCCTCATGGAGGTGGACGAAGGCGATAAATGGGTGTTATCTATAGTAAATGGCTCTCCGGCACCACTACAAGTGGATGATACCACCTTGGTGCATTTGATATCAGGGGTTAGCATAGGGGTTCTTTGTGTGTATGCCTCTAATAATAATATTGAGAGACGTTTGTTGTGGCAGCGTATAACTGAGATTTCTGCTGGTTGGATGGGGCAGGGTACGGTCATTAGAGACTTTAATACCATTAGAATTCATTATGAAGCCTTTGGTGGAGCTCCAAATATTGGAGTTATGGAGGAATTTGACTTGGCTATTCGCAAGTCTGACCTTGTTGAACCTTCAGTTCAGGAGGTGGAGATTATTCCTCTGTCTGAGGAGCTGAGTAATCAAGCGAGCTTAGCCACAGTAAATTTTTGGAGAACGGCTAGAGTGGAGGAAGCTGTAATGCGCCAAAAGTTCAGAATACGGTGGCTGAAATTAGGTGACCAGAATACTGCCGTCTTTCATATGACTGTTAGGTCTCGCCTTCACAGTAATACTTTGCGATCTGTGGTTCATCCGGATGGTACTCGGTTGACTAACCATGAAGAGGTCTTACATGCACCAATTGGAAGGGAGGAGGTGAGAAGAGTTCTTTTTtCCATGGACAGTGGAAAGGCTCCAGGACCTGATGGGTATTCAGTGGGTTTCTTCAAAGGAGCTTGGACTGTGGTTGAGGAGGATTTCTGTGATGTCGTCTTACACTTCTTTGAGACTAGTTATTTCCCTCAAGGGGTGAATACAACTATCATTACTCTTATCCCTAAAAGGAACGGTGTTGACCGTATGGAAGATTTCAGGCCTATATCTTGTTCTAACTTCCACCAATTTTGTGAGAAGGTTAGTTTAACTCATCTTACTTTTGCGGATGATCTTATGATTTTTTGTGCTGCTGATGAATTTTCTATGAGCTTCATAAAAGAGACTATTCAGAGGTTTGGTGAGTTATCAGGAATTTTTGCTAATCGTGGAAAAAACTCTATTTTtCTTGTGGGGGTTAATAGTGCGGAAGCTTCTCATCTAGCTGCTAGTATGGGTTTTACCATTAGTCATCTCTCTATTCATTATCTTGGGCTTCCTTTACTCTCACGAAGGTTACGGAGTTTTGATTGTGATCCTCTTATTCAGCGGATAACCAGTCATATTCGGTCTTGGTCTGCTAGAGTGTTATCTTTTGCAGATAGACTTCAGCTTGTTCGCTCTATTCTTCGTAGTCTACTGGTATATTGGGCTAGTGTGTTCGTGCTACCTGCGAAAGTCCACATAAATGTTGATAAGATTCTGCATTCTTATCTTTGGAGATGCAAGGCGGAGGGTAGAGGTGGTGCTAAGGTTGCTTGGGATAAGGTTTGTCTTCCTTTTGATGAGGGCGGTCTTTGCTATTCGCGACGG

Protein sequence

MIYVRDNGKRAEVSITNSFCSLMEVDEGDKWVLSIVNGSPAPLQVDDTTLVHLISGVSIGVLCVYASNNNIERRLLWQRITEISAGWMGQGTVIRDFNTIRIHYEAFGGAPNIGVMEEFDLAIRKSDLVEPSVQEVEIIPLSEELSNQASLATVNFWRTARVEEAVMRQKFRIRWLKLGDQNTAVFHMTVRSRLHSNTLRSVVHPDGTRLTNHEEVLHAPIGREEVRRVLFSMDSGKAPGPDGYSVGFFKGAWTVVEEDFCDVVLHFFETSYFPQGVNTTIITLIPKRNGVDRMEDFRPISCSNFHQFCEKVSLTHLTFADDLMIFCAADEFSMSFIKETIQRFGELSGIFANRGKNSIFLVGVNSAEASHLAASMGFTISHLSIHYLGLPLLSRRLRSFDCDPLIQRITSHIRSWSARVLSFADRLQLVRSILRSLLVYWASVFVLPAKVHINVDKILHSYLWRCKAEGRGGAKVAWDKVCLPFDEGGLCYSRR
BLAST of Cucsa.383210 vs. TrEMBL
Match: Q9SL12_ARATH (Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=At2g05550 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.9e-40
Identity = 98/276 (35.51%), Postives = 154/276 (55.80%), Query Frame = 1

Query: 216 VLHAPIGREEVRRVLFSMDSGKAPGPDGYSVGFFKGAWTVVEEDFCDVVLHFFETSYFPQ 275
           +L   + +EE++RV+FSM   K+ GPDGY   F+K  W ++ E+F   +  FFE  + P+
Sbjct: 563 MLTTEVTKEEIKRVVFSMPKDKSLGPDGYRTEFYKATWDIIGEEFVLAIKSFFEKGFLPK 622

Query: 276 GVNTTIITLIPKRNGVDRMEDFRPISCSN-FHQFCEKVSLTHLTFADDLMIFCAADEFSM 335
           GVN+TI+ LIPK+     M+D+RPISC N  ++   K+    L     L  F A ++   
Sbjct: 623 GVNSTILALIPKKLEEIEMKDYRPISCCNVIYKVISKIIANRLKRL--LPNFIAGNQ--S 682

Query: 336 SFIKETIQRFGELSGIFANRGKNSIFLVGVNSAEASHLAASMGFTISHLSIHYLGLPLLS 395
           +F+++ +     L        K++I++ G   +    +     F +  L + YLGLPLL+
Sbjct: 683 AFVQDRLLLENLL---LTTELKSTIYMAGNLGSHQREIQEKFHFEVGQLPVRYLGLPLLT 742

Query: 396 RRLRSFDCDPLIQRITSHIRSWSARVLSFADRLQLVRSILRSLLVYWASVFVLPAKVHIN 455
           +RL + D  PL++++   I SW+ R LS A RL L+ S+L S+  +W   F LP +   +
Sbjct: 743 KRLTATDYAPLLEQLKRKIGSWTHRYLSNAGRLNLISSVLWSICNFWLFAFRLPRECIRD 802

Query: 456 VDKILHSYLWRCKAEGRGGAKVAWDKVCLPFDEGGL 491
           +DK+  S+LW  +      AKV+WD VC P  EGGL
Sbjct: 803 IDKLCSSFLWSGQDLNPRKAKVSWDDVCKPKKEGGL 831

BLAST of Cucsa.383210 vs. TrEMBL
Match: F4NCG1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 7.0e-35
Identity = 77/196 (39.29%), Postives = 117/196 (59.69%), Query Frame = 1

Query: 294 MEDFRPISCSNFHQFCEKVSLTHLTFADDLMIFCAADEFSMSFIKETIQRFGELSGIFAN 353
           +E+ +     NFH  CE++++THL FADDL++FC AD+ S+  +    Q+F   SG+ A+
Sbjct: 663 LEELKGSPDFNFHPKCERLNITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAAS 722

Query: 354 RGKNSIFLVGVNSAEASHLAASMGFTISHLSIHYLGLPLLSRRLRSFDCDPLIQRITSHI 413
             K++I+  GV+   A  LA  +   +  L   YLG+PL S++L    C PL++ IT+  
Sbjct: 723 HEKSNIYFCGVDDETARELADYVHMQLGELPFRYLGVPLTSKKLTYAQCKPLVEMITNRA 782

Query: 414 RSWSARVLSFADRLQLVRSILRSLLVYWASVFVLPAKVHINVDKILHSYLWRCKAEGRGG 473
           ++W A++LS+A RLQL++SIL S+  YWA +F L  KV   V+K+   +LW  K E    
Sbjct: 783 QTWMAKLLSYAGRLQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVCRKFLWTGKTEETKK 842

Query: 474 AKVAWDKVCLPFDEGG 490
           A VAW  +  P   GG
Sbjct: 843 APVAWATIQRPKSRGG 858

BLAST of Cucsa.383210 vs. TrEMBL
Match: F4NCG1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.4e-06
Identity = 28/89 (31.46%), Postives = 50/89 (56.18%), Query Frame = 1

Query: 214 EEVLHAPIGREEVRRVLFSMDSGKAPGPDGYSVGFFKGAWTVVEEDFCDVVLHFFETSYF 273
           +E L   +   E+   L  + + KAPG DG++  FFK +W  ++++    +  FF  S  
Sbjct: 431 KESLIREVASTEIDEALAGIGNDKAPGLDGFNAYFFKKSWGSIKQEIYAGIQEFFNNSRM 490

Query: 274 PQGVNTTIITLIPKRNGVDRMEDFRPISC 303
            + +N  ++TL+PK     R+++FRPI+C
Sbjct: 491 HRPINCIVVTLLPKVQHATRVKEFRPIAC 519


HSP 2 Score: 40.4 bits (93), Expect = 7.3e+00
Identity = 18/57 (31.58%), Postives = 35/57 (61.40%), Query Frame = 1

Query: 160 ARVEEAVMRQKFRIRWLKLGDQNTAVFHMTVRSRLHSNTLRSVVHPDGTRLTNHEEV 217
           + +E+++++QK RI WL+ GD N+ +F   V++R   N +  +   DG  + + +EV
Sbjct: 337 SHIEDSILQQKSRITWLQQGDTNSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEV 393


HSP 3 Score: 154.8 bits (390), Expect = 2.7e-34
Identity = 74/186 (39.78%), Postives = 110/186 (59.14%), Query Frame = 1

Query: 305 FHQFCEKVSLTHLTFADDLMIFCAADEFSMSFIKETIQRFGELSGIFANRGKNSIFLVGV 364
           FH  C K  +  L+FADDL++FC  D  S   + E  Q+F ++SG+ AN+ K+ ++  GV
Sbjct: 322 FHPRCHKQQIIQLSFADDLLLFCRGDVQSTVLLYECFQQFSQVSGLIANQAKSCVYFGGV 381

Query: 365 NSAEASHLAASMGFTISHLSIHYLGLPLLSRRLRSFDCDPLIQRITSHIRSWSARVLSFA 424
           +  E   +    GFT  +L   YLG+PL S++L    C PL+ R+   I +W+ + LS+A
Sbjct: 382 SKQEQQLILQHTGFTKGNLPFRYLGVPLSSKKLSISQCQPLLDRMLGIINTWTVKFLSYA 441

Query: 425 DRLQLVRSILRSLLVYWASVFVLPAKVHINVDKILHSYLWRCKAEGRGGAKVAWDKVCLP 484
            RLQLV+S+L S+  +WA +F+LP KV   V+ I   +LW    + +G A VAWD +C  
Sbjct: 442 GRLQLVQSVLTSIQAFWAQIFLLPKKVFQQVEAICKRFLWNGDTQTKGKALVAWDTICCL 501

Query: 485 FDEGGL 491
              GGL
Sbjct: 502 KVAGGL 507

BLAST of Cucsa.383210 vs. TrEMBL
Match: A0A0V0IYZ4_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.7e-10
Identity = 42/106 (39.62%), Postives = 61/106 (57.55%), Query Frame = 1

Query: 198 TLRSVVHPDGTRLTNHEEV-LHAPIGREEVRRVLFSMDSGKAPGPDGYSVGFFKGAWTVV 257
           T++     DG  LT  +++ L  P   E+V   L  +D  KA G DG++  FFK AWT +
Sbjct: 63  TMQPAAMRDGPVLTRTQQLALIQPFTAEDVLTALKGIDDNKALGADGFNAHFFKQAWTTI 122

Query: 258 EEDFCDVVLHFFETSYFPQGVNTTIITLIPKRNGVDRMEDFRPISC 303
            ++  D VL FF+T+     VN T ITLIPK    + ++++RPISC
Sbjct: 123 GDEVTDGVLLFFQTNEMYGTVNRTSITLIPKVQHPNSIKEYRPISC 168


HSP 2 Score: 151.4 bits (381), Expect = 2.9e-33
Identity = 85/249 (34.14%), Postives = 136/249 (54.62%), Query Frame = 1

Query: 242 DGYSVGFFKGAWTVVEEDFCDVVLHFFETSYFPQGVNTTIITLIPKRNGVDRMEDFRPIS 301
           +G S GFF G   + + D    +L      Y  + ++T           + ++ DF+   
Sbjct: 73  NGGSHGFFAGRRGLRQXDPISPLLFVLVMEYLSRTLHT-----------MSQLPDFK--- 132

Query: 302 CSNFHQFCEKVSLTHLTFADDLMIFCAADEFSMSFIKETIQRFGELSGIFANRGKNSIFL 361
              +H  C+K+  THL FADDLMIFC  +  S++ + E +  F   +G+ AN  K++++L
Sbjct: 133 ---YHPMCKKLKHTHLIFADDLMIFCKGNVDSVNRVMEALAHFNAATGLEANLEKSNVYL 192

Query: 362 VGVNSAEASHLAASMGFTISHLSIHYLGLPLLSRRLRSFDCDPLIQRITSHIRSWSARVL 421
            GV+ +    + A  GF+     I +LGLPL  ++ +  +C  LI +IT  I+   ++ L
Sbjct: 193 AGVDESVRIQILARTGFSEGVFPIKFLGLPLSPKKWKKIECWSLIDKITHRIKVTYSKQL 252

Query: 422 SFADRLQLVRSILRSLLVYWASVFVLPAKVHINVDKILHSYLWRCKAEGRGGAKVAWDKV 481
           S A RLQL+ ++L S+  +W +VF+LP  +   VD+I   +LW   A+ +  A VAWDKV
Sbjct: 253 SDAGRLQLINAVLFSIHSFWGAVFILPQSILKKVDQICRDFLWGSSADKKNVALVAWDKV 304

Query: 482 CLPFDEGGL 491
           CLP  +GGL
Sbjct: 313 CLPKIQGGL 304

BLAST of Cucsa.383210 vs. TrEMBL
Match: Q9C6L3_ARATH (Putative uncharacterized protein F2J7.11 OS=Arabidopsis thaliana GN=F2J7.11 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 5.0e-33
Identity = 75/187 (40.11%), Postives = 114/187 (60.96%), Query Frame = 1

Query: 304 NFHQFCEKVSLTHLTFADDLMIFCAADEFSMSFIKETIQRFGELSGIFANRGKNSIFLVG 363
           ++H     +S++HL FADD+MIF     FS+  I ET+  F   SG+  N+ K+ ++L G
Sbjct: 682 HYHPKASNLSISHLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAG 741

Query: 364 VNSAEASHLAASMGFTISHLSIHYLGLPLLSRRLRSFDCDPLIQRITSHIRSWSARVLSF 423
           +N  E S+  A+ GF I  L I YLGLPL++R+LR  + +PL+++IT+  RSW  + LSF
Sbjct: 742 LNQLE-SNANAAYGFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSF 801

Query: 424 ADRLQLVRSILRSLLVYWASVFVLPAKVHINVDKILHSYLWRCKAEGRGGAKVAWDKVCL 483
           A R+QL+ S++   + +W S F+LP      ++ +   +LW    E   G KV+W  +CL
Sbjct: 802 AGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCL 861

Query: 484 PFDEGGL 491
           P  EGGL
Sbjct: 862 PKSEGGL 867

BLAST of Cucsa.383210 vs. TAIR10
Match: AT3G24255.1 (AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 107.1 bits (266), Expect = 3.2e-23
Identity = 54/130 (41.54%), Postives = 75/130 (57.69%), Query Frame = 1

Query: 361 LVGVNSAEASHLAASMGFTISHLSIHYLGLPLLSRRLRSFDCDPLIQRITSHIRSWSARV 420
           + GV   + + +  S  F    L + YLGLPLL++++ + D  PL+++I   I  W+AR 
Sbjct: 1   MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60

Query: 421 LSFADRLQLVRSILRSLLVYWASVFVLPAKVHINVDKILHSYLWRCKAEGRGGAKVAWDK 480
           LSFA RLQL+ S++ SL  +W S F LP+     +D I  S+LW         AKVAW  
Sbjct: 61  LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120

Query: 481 VCLPFDEGGL 491
           VC P DEGGL
Sbjct: 121 VCTPKDEGGL 130

BLAST of Cucsa.383210 vs. TAIR10
Match: AT1G43760.1 (AT1G43760.1 DNAse I-like superfamily protein)

HSP 1 Score: 73.9 bits (180), Expect = 3.0e-13
Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 1

Query: 224 EEVRRVLFSMDSGKAPGPDGYSVGFFKGAWTVVEEDFCDVVLHFFETSYFPQGVNTTIIT 283
           +E+   +F+M   KAPGPD ++  FF  +W VV++     V  FF T +  +  N T IT
Sbjct: 534 KEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNATAIT 593

Query: 284 LIPKRNGVDRMEDFRPISC 303
           LIPK  GVD++  FRP+SC
Sbjct: 594 LIPKVTGVDQLSMFRPVSC 612


HSP 2 Score: 40.0 bits (92), Expect = 4.8e-03
Identity = 22/62 (35.48%), Postives = 33/62 (53.23%), Query Frame = 1

Query: 155 NFWRTARVEEAVMRQKFRIRWLKLGDQNTAVFHMTVRSRLHSNTLRSVVHPDGTRLTNHE 214
           NF+  A   E+  RQK RI+WL+ GD NT  FH  + +    N ++ +   D  R+ N  
Sbjct: 425 NFFAAAL--ESFYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVT 484

Query: 215 EV 217
           +V
Sbjct: 485 QV 484

BLAST of Cucsa.383210 vs. NCBI nr
Match: gi|659126450|ref|XP_008463188.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 294.3 bits (752), Expect = 4.0e-76
Identity = 171/293 (58.36%), Postives = 198/293 (67.58%), Query Frame = 1

Query: 233 MDSGKAPGPDGYSVGFFK-----GAWTVVE--------EDFCDVVLHFFETSY------F 292
           MDSGKAPGPDG+S+GFFK      A T++         EDF  +     + +Y      F
Sbjct: 1   MDSGKAPGPDGFSLGFFKVWVNATAITLIPKHNGAERLEDFRPISCFDLQKAYDSVNWDF 60

Query: 293 PQGVNTTIITLIPK--RNG--------------VDRMEDFRPISCSNFHQFCEKVSLTHL 352
             G+   I TL+ K  R G              + RM +  P S   FH  CEKV LTHL
Sbjct: 61  LFGLLIAIGTLLKKGVRQGDPLSPFLFVMVMEVLSRMLNKIPQSFQ-FHHRCEKVKLTHL 120

Query: 353 TFADDLMIFCAADEFSMSFIKETIQRFGELSGIFANRGKNSIFLVGVNSAEASHLAASMG 412
           TFADDLMIFCAADE S+ FI++ +Q+FGELSG+FAN  K+SIF+ GVN+  ASHLAA MG
Sbjct: 121 TFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMG 180

Query: 413 FTISHLSIHYLGLPLLSRRLRSFDCDPLIQRITSHIRSWSARVLSFADRLQLVRSILRSL 472
           F   +LS+ YLGLPLL+ RL S DC PLIQRITS IRSW+ARVLSFA R+QLV S+LRSL
Sbjct: 181 FVRGNLSVRYLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSL 240

Query: 473 LVYWASVFVLPAKVHINVDKILHSYLWRCKAEGRGGAKVAWDKVCLPFDEGGL 491
            VYWASVFVLPA VH  VDKIL SYLWR K EGRGG KVAW  VCLPF+EGGL
Sbjct: 241 QVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDVCLPFEEGGL 292

BLAST of Cucsa.383210 vs. NCBI nr
Match: gi|659121154|ref|XP_008460525.1| (PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 269.2 bits (687), Expect = 1.4e-68
Identity = 136/187 (72.73%), Postives = 152/187 (81.28%), Query Frame = 1

Query: 304 NFHQFCEKVSLTHLTFADDLMIFCAADEFSMSFIKETIQRFGELSGIFANRGKNSIFLVG 363
           +FH  CEKV LTHLTFADDLMIFCAA+E S+ FI+E +Q+FGELSG+FAN  K+SIF+ G
Sbjct: 50  HFHHRCEKVKLTHLTFADDLMIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAG 109

Query: 364 VNSAEASHLAASMGFTISHLSIHYLGLPLLSRRLRSFDCDPLIQRITSHIRSWSARVLSF 423
           VN+  ASHLA  MGF   +LS+ YLGLPLL+ RLRS D  PLIQRITS IRSW+ARVLSF
Sbjct: 110 VNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSF 169

Query: 424 ADRLQLVRSILRSLLVYWASVFVLPAKVHINVDKILHSYLWRCKAEGRGGAKVAWDKVCL 483
           A RLQLV S+LRS  VYWASVFVLPA VH  VDKIL SYLWR K EGRGG KVAW  VCL
Sbjct: 170 AGRLQLVHSVLRSFQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDVCL 229

Query: 484 PFDEGGL 491
           PF+EGGL
Sbjct: 230 PFEEGGL 236

BLAST of Cucsa.383210 vs. NCBI nr
Match: gi|923808393|ref|XP_013690018.1| (PREDICTED: uncharacterized protein LOC106393925 [Brassica napus])

HSP 1 Score: 215.3 bits (547), Expect = 2.4e-52
Identity = 106/299 (35.45%), Postives = 168/299 (56.19%), Query Frame = 1

Query: 216 VLHAPIGREEVRRVLFSMDSGKAPGPDGYSVGFFKGAWTVVEEDFCDVVLHFFETSYFPQ 275
           +L   +  EE+R V+F M S K+PGPDG+++ FFK +W+++ +DF   V  FF   + P+
Sbjct: 239 MLMRTVTEEEIREVVFKMPSNKSPGPDGFTIQFFKSSWSIIAKDFTTAVQSFFSKGFLPK 298

Query: 276 GVNTTIITLIPKRNGVDRMEDFRPISCSN------------------------FHQFCEK 335
           G+N TI+ LIPK++  + M D+RPISC N                        +H  C+ 
Sbjct: 299 GLNATILALIPKKDSAEEMRDYRPISCCNVLYKCKSMESLQMLDRAVERKIIGYHPRCKN 358

Query: 336 VSLTHLTFADDLMIFCAADEFSMSFIKETIQRFGELSGIFANRGKNSIFLVGVNSAEASH 395
           + LTHL FADDLM+F    + S+  + +    F  +SG+  +  K+++++ GV+   A++
Sbjct: 359 ILLTHLCFADDLMVFTDGTKRSIEGVLQIFTDFAAISGLNISLEKSTLYIAGVSEDTATN 418

Query: 396 LAASMGFTISHLSIHYLGLPLLSRRLRSFDCDPLIQRITSHIRSWSARVLSFADRLQLVR 455
           +     F    L + YLGLPLL++R+   D  PL+++I   + SW+ R LS AD LQL+ 
Sbjct: 419 ILNRFSFASGKLPVRYLGLPLLTKRMIVSDYLPLVEKIRKRMTSWTGRFLSHADMLQLIN 478

Query: 456 SILRSLLVYWASVFVLPAKVHINVDKILHSYLWRCKAEGRGGAKVAWDKVCLPFDEGGL 491
           S++ SL  +W S F LP      ++ +  ++LW         AKV+W+ +CLP  EGGL
Sbjct: 479 SVITSLANFWLSAFRLPGSCLKEIECMCSAFLWSGTELKTIKAKVSWNDICLPKAEGGL 537

BLAST of Cucsa.383210 vs. NCBI nr
Match: gi|727558453|ref|XP_010451418.1| (PREDICTED: uncharacterized protein LOC104733546 [Camelina sativa])

HSP 1 Score: 208.0 bits (528), Expect = 3.8e-50
Identity = 107/280 (38.21%), Postives = 160/280 (57.14%), Query Frame = 1

Query: 216 VLHAPIGREEVRRVLFSMDSGKAPGPDGYSVGFFKGAWTVVEEDFCDVVLHFFETSYFPQ 275
           +L  P+  EEV++VLF+M + K+PGPDGY+  F+K  W  V  +F   V  FF   + P+
Sbjct: 257 LLTRPVSAEEVQKVLFAMPNDKSPGPDGYTSEFYKAVWDYVGHEFVLAVQSFFIKGFLPK 316

Query: 276 GVNTTIITLIPKRNGVDRMEDFRPISCSN-----FHQFCEKVSLTHLTFADDLMIFCAAD 335
           GVN+TI+ LIPK+     M+D+RPISC N       +    V    ++FADDL++F    
Sbjct: 317 GVNSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANVLYKVISFADDLLVFTDGS 376

Query: 336 EFSMSFIKETIQRFGELSGIFANRGKNSIFLVGVNSAEASHLAASMGFTISHLSIHYLGL 395
             S+  I +  ++F   SG+  +  K +++L GV++     +     F +  L I YLGL
Sbjct: 377 VRSIEGIVQVFEKFARFSGLRISMEKTTVYLAGVSAEVHQEIMDRFSFAVGTLPIRYLGL 436

Query: 396 PLLSRRLRSFDCDPLIQRITSHIRSWSARVLSFADRLQLVRSILRSLLVYWASVFVLPAK 455
           PL+++RL S D  PLI+ +   I SWSAR LS+A RL L+ S+L S+   W + + LP +
Sbjct: 437 PLVTKRLSSADYLPLIKHVKKRIGSWSARFLSYAGRLNLISSVLWSICNLWLAAYCLPRE 496

Query: 456 VHINVDKILHSYLWRCKAEGRGGAKVAWDKVCLPFDEGGL 491
               V+K+ ++YLW         AK++W  VC P  EGGL
Sbjct: 497 CIRTVEKLCYAYLWSGAELNTNKAKISWVDVCKPKTEGGL 536

BLAST of Cucsa.383210 vs. NCBI nr
Match: gi|702284285|ref|XP_010046135.1| (PREDICTED: uncharacterized protein LOC104434998 [Eucalyptus grandis])

HSP 1 Score: 207.6 bits (527), Expect = 5.0e-50
Identity = 108/296 (36.49%), Postives = 164/296 (55.41%), Query Frame = 1

Query: 217 LHAPIGREEVRRVLFSMDSGKAPGPDGYSVGFFKGAWTVV---EEDFCDVVLHFFETSYF 276
           L  P+   E+R  +FS+  GKAPGPDG++V FFK  W       +    +++    T  F
Sbjct: 56  LDRPVSDSEIRDTVFSLARGKAPGPDGFTVEFFKHNWETAFGFPDHLTRLIMTCVRTPKF 115

Query: 277 PQGVNTTIITLIPKRNGVDRMEDFRPISCS-------------------NFHQFCEKVSL 336
              +N  +        G+ + +   P   +                    ++  C+  +L
Sbjct: 116 SIALNGKLHGFFASGRGLRQGDPLSPYLFTLVMEVLSGILTTRSSRPEFKYYWRCKSTNL 175

Query: 337 THLTFADDLMIFCAADEFSMSFIKETIQRFGELSGIFANRGKNSIFLVGVNSAEASHLAA 396
           THL FADD+ +FC AD  S+   KE +Q F + SG+  N  K+ ++L G + +  + +  
Sbjct: 176 THLFFADDVFLFCEADLPSVKLFKECLQIFSDWSGLAPNTNKSEVYLAGGSPSLRNQILR 235

Query: 397 SMGFTISHLSIHYLGLPLLSRRLRSFDCDPLIQRITSHIRSWSARVLSFADRLQLVRSIL 456
           ++GF    LS  YLG+P+++ R+   DC  L+ RIT+ I+SW+ R LSFA RLQL+RS+L
Sbjct: 236 TLGFLEGRLSARYLGVPIITSRISKADCCVLVNRITARIQSWTHRFLSFAGRLQLIRSVL 295

Query: 457 RSLLVYWASVFVLPAKVHINVDKILHSYLWRCKAEGRGGAKVAWDKVCLPFDEGGL 491
            ++  YWASVF+LPA V   +++IL  +LW+    GRGGAKV+W+ VC P DEGGL
Sbjct: 296 HAIQAYWASVFILPAAVLDQIERILRQFLWKGPELGRGGAKVSWEDVCCPKDEGGL 351

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SL12_ARATH1.9e-4035.51Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=A... [more]
F4NCG1_BETVU7.0e-3539.29Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1[more]
F4NCG1_BETVU1.4e-0631.46Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1[more]
A0A0V0IYZ4_SOLCH2.7e-1039.62Putative ovule protein OS=Solanum chacoense PE=4 SV=1[more]
Q9C6L3_ARATH5.0e-3340.11Putative uncharacterized protein F2J7.11 OS=Arabidopsis thaliana GN=F2J7.11 PE=4... [more]
Match NameE-valueIdentityDescription
AT3G24255.13.2e-2341.54 RNA-directed DNA polymerase (reverse transcriptase)-related family p... [more]
AT1G43760.13.0e-1343.04 DNAse I-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|659126450|ref|XP_008463188.1|4.0e-7658.36PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo][more]
gi|659121154|ref|XP_008460525.1|1.4e-6872.73PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucum... [more]
gi|923808393|ref|XP_013690018.1|2.4e-5235.45PREDICTED: uncharacterized protein LOC106393925 [Brassica napus][more]
gi|727558453|ref|XP_010451418.1|3.8e-5038.21PREDICTED: uncharacterized protein LOC104733546 [Camelina sativa][more]
gi|702284285|ref|XP_010046135.1|5.0e-5036.49PREDICTED: uncharacterized protein LOC104434998 [Eucalyptus grandis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.383210.1Cucsa.383210.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 160..425
score: 5.6
NoneNo IPR availablePANTHERPTHR19446:SF368SUBFAMILY NOT NAMEDcoord: 160..425
score: 5.6

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.383210Silver-seed gourdcarcgyB0273
Cucsa.383210Silver-seed gourdcarcgyB0277
Cucsa.383210Silver-seed gourdcarcgyB1080
Cucsa.383210Silver-seed gourdcarcgyB1195
Cucsa.383210Cucumber (Chinese Long) v3cgycucB581
Cucsa.383210Cucumber (Chinese Long) v3cgycucB582
Cucsa.383210Watermelon (97103) v2cgywmbB657
Cucsa.383210Watermelon (97103) v2cgywmbB658
Cucsa.383210Wax gourdcgywgoB762
Cucsa.383210Wax gourdcgywgoB763
Cucsa.383210Cucumber (Gy14) v1cgycgyB133
Cucsa.383210Cucurbita maxima (Rimu)cgycmaB1054
Cucsa.383210Cucurbita maxima (Rimu)cgycmaB1055
Cucsa.383210Cucurbita maxima (Rimu)cgycmaB1058
Cucsa.383210Cucurbita maxima (Rimu)cgycmaB1059
Cucsa.383210Cucurbita moschata (Rifu)cgycmoB1054
Cucsa.383210Cucurbita moschata (Rifu)cgycmoB1055
Cucsa.383210Cucurbita moschata (Rifu)cgycmoB1058
Cucsa.383210Cucurbita moschata (Rifu)cgycmoB1059
Cucsa.383210Wild cucumber (PI 183967)cgycpiB565
Cucsa.383210Wild cucumber (PI 183967)cgycpiB566
Cucsa.383210Cucumber (Chinese Long) v2cgycuB536
Cucsa.383210Cucumber (Chinese Long) v2cgycuB537
Cucsa.383210Melon (DHL92) v3.5.1cgymeB624
Cucsa.383210Melon (DHL92) v3.5.1cgymeB625
Cucsa.383210Watermelon (Charleston Gray)cgywcgB653
Cucsa.383210Watermelon (Charleston Gray)cgywcgB654
Cucsa.383210Watermelon (97103) v1cgywmB690
Cucsa.383210Watermelon (97103) v1cgywmB691
Cucsa.383210Cucurbita pepo (Zucchini)cgycpeB1007
Cucsa.383210Cucurbita pepo (Zucchini)cgycpeB1009
Cucsa.383210Cucurbita pepo (Zucchini)cgycpeB1010
Cucsa.383210Cucurbita pepo (Zucchini)cgycpeB1012
Cucsa.383210Bottle gourd (USVL1VR-Ls)cgylsiB619
Cucsa.383210Bottle gourd (USVL1VR-Ls)cgylsiB620
Cucsa.383210Melon (DHL92) v3.6.1cgymedB620
Cucsa.383210Melon (DHL92) v3.6.1cgymedB621