Cucsa.379840 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.379840
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RING-H2 finger protein ATL16
Location	scaffold03837 : 242079 .. 242702 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATCGAGTCCGCCTCCGCCATCTCCGGTGCCTGATTACTCTAGCTGGAGTCCATGGTCAATCTCGACCATCGTCGTCGTATGCATCGTCTTCCTACTGTTGAGCAACTATAGACTTTTGAAACAATTGTGCCGTGTCCTTCATGGACTGTTTACCGGTCGACCTACGGTCCAATTTGAGGAAAACCCTAACAATCCTTCACTACAAATCCATGGCCATGGACTGGAGACCTCGATGATTCGTTTGCTACCTATATCGCAGTTCAAAAAGAATGAAGAATCCGAATCAACGACAAGTTTCAATACGGAATGCGCTGTTTGTTTGGGTGAATTCGAAGAAGGGGAATTGATTAAACACTTACCGAATTGTAATCATTCGTTTCATAGTCCTTGTATCGATGCCTGGTTCCGTAATCATTCGAGTTGCCCTCTCTGCAGATTGCAAGTCTTGAGTTTCTCTACTCCTGATTCTTCTTCTTCAGCAATGCTGGAAACGCTTGGAAGAGAAAATGTTCTACGAGAAAGAGTAGCGCATTATCAAACACTTCGTGCTCAAATTCTGCAGCACCCTGAATTCAGAAGAGATGCATCGATTCAAGGAACAGACCAACGAAACCGATGA

mRNA sequence

ATGCCATCGAGTCCGCCTCCGCCATCTCCGGTGCCTGATTACTCTAGCTGGAGTCCATGGTCAATCTCGACCATCGTCGTCGTATGCATCGTCTTCCTACTGTTGAGCAACTATAGACTTTTGAAACAATTGTGCCGTGTCCTTCATGGACTGTTTACCGGTCGACCTACGGTCCAATTTGAGGAAAACCCTAACAATCCTTCACTACAAATCCATGGCCATGGACTGGAGACCTCGATGATTCGTTTGCTACCTATATCGCAGTTCAAAAAGAATGAAGAATCCGAATCAACGACAAGTTTCAATACGGAATGCGCTGTTTGTTTGGGTGAATTCGAAGAAGGGGAATTGATTAAACACTTACCGAATTGTAATCATTCGTTTCATAGTCCTTGTATCGATGCCTGGTTCCGTAATCATTCGAGTTGCCCTCTCTGCAGATTGCAAGTCTTGAGTTTCTCTACTCCTGATTCTTCTTCTTCAGCAATGCTGGAAACGCTTGGAAGAGAAAATGTTCTACGAGAAAGAGTAGCGCATTATCAAACACTTCGTGCTCAAATTCTGCAGCACCCTGAATTCAGAAGAGATGCATCGATTCAAGGAACAGACCAACGAAACCGATGA

Coding sequence (CDS)

ATGCCATCGAGTCCGCCTCCGCCATCTCCGGTGCCTGATTACTCTAGCTGGAGTCCATGGTCAATCTCGACCATCGTCGTCGTATGCATCGTCTTCCTACTGTTGAGCAACTATAGACTTTTGAAACAATTGTGCCGTGTCCTTCATGGACTGTTTACCGGTCGACCTACGGTCCAATTTGAGGAAAACCCTAACAATCCTTCACTACAAATCCATGGCCATGGACTGGAGACCTCGATGATTCGTTTGCTACCTATATCGCAGTTCAAAAAGAATGAAGAATCCGAATCAACGACAAGTTTCAATACGGAATGCGCTGTTTGTTTGGGTGAATTCGAAGAAGGGGAATTGATTAAACACTTACCGAATTGTAATCATTCGTTTCATAGTCCTTGTATCGATGCCTGGTTCCGTAATCATTCGAGTTGCCCTCTCTGCAGATTGCAAGTCTTGAGTTTCTCTACTCCTGATTCTTCTTCTTCAGCAATGCTGGAAACGCTTGGAAGAGAAAATGTTCTACGAGAAAGAGTAGCGCATTATCAAACACTTCGTGCTCAAATTCTGCAGCACCCTGAATTCAGAAGAGATGCATCGATTCAAGGAACAGACCAACGAAACCGATGA

Protein sequence

MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQFEENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSAMLETLGRENVLRERVAHYQTLRAQILQHPEFRRDASIQGTDQRNR*

Homology

[Close]

BLAST of Cucsa.379840 vs. Swiss-Prot
Match: ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.1e-22
Identity = 58/166 (34.94%), Postives = 88/166 (53.01%), Query Frame = 1


Query: 5   PPPPSPVPD------YSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTV 64
           PPPPS   D       SS+SP  I+ I ++    +L+S Y L+ + C   H   +   T+
Sbjct: 36  PPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCH-RHHQTSSSETL 95

Query: 65  QFEEN-----PNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFE 124
               N      +   +  +G GL  SMI+ + + ++K  +         ++C+VCL EFE
Sbjct: 96  NLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVD----GSDCSVCLSEFE 155

Query: 125 EGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSS 160
           E E ++ LP CNH+FH PCID W ++HS+CPLCR  V   + P +S
Sbjct: 156 ENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTAS 196

[Close]

BLAST of Cucsa.379840 vs. Swiss-Prot
Match: ATL16_ARATH (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-19
Identity = 57/167 (34.13%), Postives = 91/167 (54.49%), Query Frame = 1


Query: 5   PPPPSPVPDYSSWSPWS-----ISTIVVVCIVFLLLSNYRLLKQLCRVLHGL-FTGRPTV 64
           PPPP P+   +S +  S     ++ I ++   FLL+S Y  + + C   H +   GR ++
Sbjct: 17  PPPPPPIFHRASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSL 76

Query: 65  -QFEENPNNP----SLQIHGHGLETSMIRLLPISQFKKN----------EESESTTSFNT 124
            +   N  +P    S ++   GL+ S+IR +PI +FKK           E  E     + 
Sbjct: 77  SRRRRNDQDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQ 136

Query: 125 ECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQV 151
           EC+VCL EF++ E ++ +PNC+H FH  CID W +N+++CPLCR +V
Sbjct: 137 ECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRV 183

[Close]

BLAST of Cucsa.379840 vs. Swiss-Prot
Match: ATL55_ARATH (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-19
Identity = 69/199 (34.67%), Postives = 90/199 (45.23%), Query Frame = 1


Query: 2   PSSPPPPSPVPDYSSWSPWSISTI-VVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF 61
           P  PPPP P  + S   P SI  +  ++  +FL+   Y  + Q  R+     T   T Q 
Sbjct: 26  PPPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRISAASVTPGDTNQQ 85

Query: 62  EENPNNPSL---------QIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGE 121
           E+                QI   GL  S I  + +  FKK E         TEC+VCL E
Sbjct: 86  EDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIID----GTECSVCLNE 145

Query: 122 FEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFS-----------TPDSSS 180
           FEE E ++ LP C+H+FH  CID W  +H +CPLCR  VL  +            PDS S
Sbjct: 146 FEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPPHQETETNHQPDSES 205

[Close]

BLAST of Cucsa.379840 vs. Swiss-Prot
Match: ATL51_ARATH (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 3.3e-19
Identity = 60/175 (34.29%), Postives = 93/175 (53.14%), Query Frame = 1


Query: 5   PPPPSPVPD------YSSWSPWSISTIVVVCIVFLLLSNYRLLKQLC-RVLHGL------ 64
           PPPPS   D       S +SP  I+ I ++   F+L+S Y L+ + C R  H        
Sbjct: 38  PPPPSFYLDDEDDSSSSDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAA 97

Query: 65  ----FTGRPTVQFEENPNN-----PSLQIHG---HGLETSMIRLLPISQFKKNEESESTT 124
                +   T Q   N NN     P+  I G    GL+ S+I+ + + +++K +    ++
Sbjct: 98  AINRISSDYTWQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVESS 157

Query: 125 SFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFS 155
               +C+VCL EF+E E ++ LP CNH+FH PCID W ++HS+CPLCR  +++ S
Sbjct: 158 ----DCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSS 208

[Close]

BLAST of Cucsa.379840 vs. Swiss-Prot
Match: ATL41_ORYSJ (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 7.2e-19
Identity = 60/193 (31.09%), Postives = 93/193 (48.19%), Query Frame = 1


Query: 5   PPPPSPVPDYSS-------WSPWSISTIVVVCIVFLLLSNYRLLKQLCRV---LHGLFTG 64
           PPPP  V   S+       +SP  I+ I V+   FLL+S Y  + + C     L G   G
Sbjct: 36  PPPPFDVAGTSADDSSGPVFSPLVIAIIGVLASAFLLVSYYTFISKYCGTVSSLRGRVFG 95

Query: 65  RPTVQFEENPNNPSLQIHGHG---------------LETSMIRLLPISQFKKNEESESTT 124
             +          S   HGHG               L+ ++I  + + ++++ +    T 
Sbjct: 96  SSSGGAAYGGGAGSGGRHGHGQSRSHESWNVSPPSGLDETLINKITVCKYRRGDGFVHT- 155

Query: 125 SFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQV----LSFST 169
              T+C+VCLGEF +GE ++ LP C+H+FH  CID W ++HS+CPLCR  +    +  ++
Sbjct: 156 ---TDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANITFVTVGLAS 215

[Close]

BLAST of Cucsa.379840 vs. TrEMBL
Match: A0A0A0KCA5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G303210 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 3.6e-118
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1


Query: 1   MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF 60
           MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF
Sbjct: 1   MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF 60

Query: 61  EENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKH 120
           EENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKH
Sbjct: 61  EENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKH 120

Query: 121 LPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSAMLETLGRENVLRERVAHY 180
           LPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSAMLETLGRENVLRERVAHY
Sbjct: 121 LPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSAMLETLGRENVLRERVAHY 180

Query: 181 QTLRAQILQHPEFRRDASIQGTDQRNR 208
           QTLRAQILQHPEFRRDASIQGTDQRNR
Sbjct: 181 QTLRAQILQHPEFRRDASIQGTDQRNR 207

[Close]

BLAST of Cucsa.379840 vs. TrEMBL
Match: A0A067L6V3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05653 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.5e-42
Identity = 94/199 (47.24%), Postives = 127/199 (63.82%), Query Frame = 1


Query: 1   MPSSPPPPSPV--PDYSS--WSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRP 60
           + SSPPP S     D+ S  W+P+ I  ++ +CIV ++ S Y+++K+LC  L+ L   R 
Sbjct: 4   LTSSPPPVSEFHPEDFPSQQWNPYVIGPLIAMCIVVVIFSYYKIIKRLCCALNTLTFSRN 63

Query: 61  TVQFEE-NPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEG 120
            VQ    +  +PSLQ   HGLE+ ++  LPISQFKK +E E T   N+ECAVCLGEFEEG
Sbjct: 64  HVQTRHLSVEDPSLQYQSHGLESIVMDSLPISQFKKEKEQEETRQSNSECAVCLGEFEEG 123

Query: 121 ELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSAMLETLGRENVLRE 180
           E +KHLPNC H FH  CID WF+ HSSCPLCR  V   S    S + ++E+L RE+   +
Sbjct: 124 EWLKHLPNCAHVFHVACIDTWFQTHSSCPLCRSLVYENSI---SINTLIESLQREDFFHQ 183

Query: 181 RVAHYQTLRAQILQHPEFR 195
           R  +YQ LR+QI ++   R
Sbjct: 184 RAEYYQILRSQIFRNSATR 199

[Close]

BLAST of Cucsa.379840 vs. TrEMBL
Match: W9SMD5_9ROSA (RING-H2 finger protein ATL16 OS=Morus notabilis GN=L484_010848 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.6e-39
Identity = 86/190 (45.26%), Postives = 122/190 (64.21%), Query Frame = 1


Query: 16  SWSPWSISTIVVVCIVFLLLSNYRLLKQLC---RVLHGLFTGRPTVQF--EENPNNPSLQ 75
           S +PW I+++V++C + +L S  R++   C   + ++    G P  Q   E N ++PSL+
Sbjct: 2   SSNPWLIASVVMICAIIILFSYLRIVVLFCWPPQRINFSRNGVPRRQLLDESNTDDPSLR 61

Query: 76  IHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHS 135
              HGLE S +  LPI+QFK+  E E   + +T+CAVCLGEF+EGE ++HLP+C+HSFH 
Sbjct: 62  FDSHGLEFSTMHSLPITQFKEESEGEMNKTRSTDCAVCLGEFKEGEWLRHLPSCSHSFHI 121

Query: 136 PCIDAWFRNHSSCPLCRLQVLSFSTPDSSS----SAMLETLGRENVLRERVAHYQTLRAQ 195
            CID WF NH++CPLCR +V S    D  S     +  +TL RE+  RER AHY+ LR+Q
Sbjct: 122 SCIDTWFLNHANCPLCRTEVQSLKLEDLESPVSHHSPPQTLRREDFFRERAAHYELLRSQ 181

Query: 196 ILQHPEFRRD 197
           ILQ+   RRD
Sbjct: 182 ILQNSVSRRD 191

[Close]

BLAST of Cucsa.379840 vs. TrEMBL
Match: A0A068UMZ3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028155001 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.3e-38
Identity = 85/191 (44.50%), Postives = 120/191 (62.83%), Query Frame = 1


Query: 6   PPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQ----FE 65
           PPP+   ++S W+P  I+ +VVVC +FLL    ++L++ C     +   R   Q     +
Sbjct: 217 PPPTSGFEHSQWNPMVIALVVVVCCIFLLFGYQKILQRHCSHFGSITNSRNQGQSRRLHD 276

Query: 66  ENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKHL 125
              ++PSLQ+   GL++ ++  LPI+QFKKN E E+     T+CAVCLGEFEEGE +KHL
Sbjct: 277 AVADDPSLQLQSRGLDSFVMHSLPITQFKKNNEEETCKGI-TDCAVCLGEFEEGEWLKHL 336

Query: 126 PNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSA---MLETLGRENVLRERVA 185
           P+C+H FH  CIDAWF+ HSSCPLCR  V + +     S +   +LETL RE   +ER  
Sbjct: 337 PHCSHVFHVSCIDAWFQTHSSCPLCRSYVFNLTMHQEHSVSVYTLLETLRREEFSQERAE 396

Query: 186 HYQTLRAQILQ 190
           +YQ LR+ +LQ
Sbjct: 397 NYQILRSHVLQ 406

[Close]

BLAST of Cucsa.379840 vs. TrEMBL
Match: A0A061GXP2_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_041911 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.7e-38
Identity = 91/205 (44.39%), Postives = 127/205 (61.95%), Query Frame = 1


Query: 1   MPSSP--PPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLC----RVLHGLFTG 60
           MPS+P   P SP       SPW I++I ++CI+FL+   Y  LK+LC       +    G
Sbjct: 1   MPSTPFLAPSSPARP-GLCSPWVIASIAIICIIFLVFRYYGELKRLCCAFTAATYSRNQG 60

Query: 61  RPTVQFEENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEE 120
           +  +  + + + P  Q   + +E+++I  LPISQ+KK  + E   S NT+CAVCLGEFEE
Sbjct: 61  QRRLLDDGDFDPPPSQNQSNAMESTVIHSLPISQYKKENKEEPQPS-NTDCAVCLGEFEE 120

Query: 121 GELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFS-TPDSSSS----AMLETLGR 180
           G+L++HLPNC H+FH  CID WF++HSSCPLCR  V      P+ S S     MLETL R
Sbjct: 121 GDLLRHLPNCTHAFHISCIDTWFQSHSSCPLCRSSVSELPIRPECSVSISMFTMLETLRR 180

Query: 181 ENVLRERVAHYQTLRAQILQHPEFR 195
           E+  ++R AHYQ LR+++L+H   R
Sbjct: 181 EDFSQDRAAHYQMLRSEVLRHSALR 203

[Close]

BLAST of Cucsa.379840 vs. TAIR10
Match: AT5G17600.1 (AT5G17600.1 RING/U-box superfamily protein)

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-23
Identity = 58/166 (34.94%), Postives = 88/166 (53.01%), Query Frame = 1


Query: 5   PPPPSPVPD------YSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTV 64
           PPPPS   D       SS+SP  I+ I ++    +L+S Y L+ + C   H   +   T+
Sbjct: 36  PPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCH-RHHQTSSSETL 95

Query: 65  QFEEN-----PNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFE 124
               N      +   +  +G GL  SMI+ + + ++K  +         ++C+VCL EFE
Sbjct: 96  NLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVD----GSDCSVCLSEFE 155

Query: 125 EGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSS 160
           E E ++ LP CNH+FH PCID W ++HS+CPLCR  V   + P +S
Sbjct: 156 ENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTAS 196

[Close]

BLAST of Cucsa.379840 vs. TAIR10
Match: AT5G10380.1 (AT5G10380.1 RING/U-box superfamily protein)

HSP 1 Score: 97.8 bits (242), Expect = 8.2e-21
Identity = 69/199 (34.67%), Postives = 90/199 (45.23%), Query Frame = 1


Query: 2   PSSPPPPSPVPDYSSWSPWSISTI-VVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF 61
           P  PPPP P  + S   P SI  +  ++  +FL+   Y  + Q  R+     T   T Q 
Sbjct: 26  PPPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRISAASVTPGDTNQQ 85

Query: 62  EENPNNPSL---------QIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGE 121
           E+                QI   GL  S I  + +  FKK E         TEC+VCL E
Sbjct: 86  EDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIID----GTECSVCLNE 145

Query: 122 FEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFS-----------TPDSSS 180
           FEE E ++ LP C+H+FH  CID W  +H +CPLCR  VL  +            PDS S
Sbjct: 146 FEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPPHQETETNHQPDSES 205

[Close]

BLAST of Cucsa.379840 vs. TAIR10
Match: AT5G43420.1 (AT5G43420.1 RING/U-box superfamily protein)

HSP 1 Score: 97.8 bits (242), Expect = 8.2e-21
Identity = 57/167 (34.13%), Postives = 91/167 (54.49%), Query Frame = 1


Query: 5   PPPPSPVPDYSSWSPWS-----ISTIVVVCIVFLLLSNYRLLKQLCRVLHGL-FTGRPTV 64
           PPPP P+   +S +  S     ++ I ++   FLL+S Y  + + C   H +   GR ++
Sbjct: 17  PPPPPPIFHRASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSL 76

Query: 65  -QFEENPNNP----SLQIHGHGLETSMIRLLPISQFKKN----------EESESTTSFNT 124
            +   N  +P    S ++   GL+ S+IR +PI +FKK           E  E     + 
Sbjct: 77  SRRRRNDQDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQ 136

Query: 125 ECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQV 151
           EC+VCL EF++ E ++ +PNC+H FH  CID W +N+++CPLCR +V
Sbjct: 137 ECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRV 183

[Close]

BLAST of Cucsa.379840 vs. TAIR10
Match: AT3G03550.1 (AT3G03550.1 RING/U-box superfamily protein)

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-20
Identity = 60/175 (34.29%), Postives = 93/175 (53.14%), Query Frame = 1


Query: 5   PPPPSPVPD------YSSWSPWSISTIVVVCIVFLLLSNYRLLKQLC-RVLHGL------ 64
           PPPPS   D       S +SP  I+ I ++   F+L+S Y L+ + C R  H        
Sbjct: 38  PPPPSFYLDDEDDSSSSDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAA 97

Query: 65  ----FTGRPTVQFEENPNN-----PSLQIHG---HGLETSMIRLLPISQFKKNEESESTT 124
                +   T Q   N NN     P+  I G    GL+ S+I+ + + +++K +    ++
Sbjct: 98  AINRISSDYTWQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVESS 157

Query: 125 SFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFS 155
               +C+VCL EF+E E ++ LP CNH+FH PCID W ++HS+CPLCR  +++ S
Sbjct: 158 ----DCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSS 208

[Close]

BLAST of Cucsa.379840 vs. TAIR10
Match: AT1G04360.1 (AT1G04360.1 RING/U-box superfamily protein)

HSP 1 Score: 92.8 bits (229), Expect = 2.6e-19
Identity = 58/168 (34.52%), Postives = 84/168 (50.00%), Query Frame = 1


Query: 6   PPPSPVPDYSSWSP--------------WSISTIVVVCIVFLLLSNYRLLKQLCRVLHGL 65
           PPP P P  +  SP               +I+ I ++   FLL+S Y  + + C   H +
Sbjct: 16  PPPPPPPSTTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQI 75

Query: 66  FTGRPTVQFEENPNNPSLQIHGH----GLETSMIRLLPISQFKKN-----EESESTTSFN 125
              R   +   +  NP +    H    GL+ S IR +P+ +FKK      EE +S  S  
Sbjct: 76  DIFRR--RRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNS-- 135

Query: 126 TECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQV 151
            EC+VCL EF+E E ++ +PNC H FH  CID W + +++CPLCR  V
Sbjct: 136 QECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSV 179

[Close]

BLAST of Cucsa.379840 vs. NCBI nr
Match: gi|700192151|gb|KGN47355.1| (hypothetical protein Csa_6G303210 [Cucumis sativus])

HSP 1 Score: 432.2 bits (1110), Expect = 5.2e-118
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1


Query: 1   MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF 60
           MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF
Sbjct: 1   MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF 60

Query: 61  EENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKH 120
           EENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKH
Sbjct: 61  EENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKH 120

Query: 121 LPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSAMLETLGRENVLRERVAHY 180
           LPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSAMLETLGRENVLRERVAHY
Sbjct: 121 LPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSAMLETLGRENVLRERVAHY 180

Query: 181 QTLRAQILQHPEFRRDASIQGTDQRNR 208
           QTLRAQILQHPEFRRDASIQGTDQRNR
Sbjct: 181 QTLRAQILQHPEFRRDASIQGTDQRNR 207

[Close]

BLAST of Cucsa.379840 vs. NCBI nr
Match: gi|659095050|ref|XP_008448367.1| (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo])

HSP 1 Score: 396.0 bits (1016), Expect = 4.1e-107
Identity = 189/206 (91.75%), Postives = 198/206 (96.12%), Query Frame = 1


Query: 1   MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF 60
           MPSSPPPPSPVPDYSSWSPWSISTIV+VC++FLLLSNYRLLKQLCRVLH LF+GRP VQF
Sbjct: 1   MPSSPPPPSPVPDYSSWSPWSISTIVIVCVIFLLLSNYRLLKQLCRVLHELFSGRPAVQF 60

Query: 61  EENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKH 120
           EENPNNPSLQIH HGLETSMIRLLPISQFKK EESESTTSFNTECAVCLGEFEEGELIK+
Sbjct: 61  EENPNNPSLQIHAHGLETSMIRLLPISQFKKKEESESTTSFNTECAVCLGEFEEGELIKN 120

Query: 121 LPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSAMLETLGRENVLRERVAHY 180
           LPNCNHSFHS CIDAWFR+HSSCPLCRLQV SFSTPD SSSAMLETLGREN+LRERVAHY
Sbjct: 121 LPNCNHSFHSSCIDAWFRDHSSCPLCRLQVWSFSTPD-SSSAMLETLGRENILRERVAHY 180

Query: 181 QTLRAQILQHPEFRRDASIQGTDQRN 207
           QTLRAQILQHPEFRRD SIQG+DQR+
Sbjct: 181 QTLRAQILQHPEFRRDESIQGSDQRD 205

[Close]

BLAST of Cucsa.379840 vs. NCBI nr
Match: gi|802554877|ref|XP_012065136.1| (PREDICTED: RING-H2 finger protein ATL66-like [Jatropha curcas])

HSP 1 Score: 180.3 bits (456), Expect = 3.6e-42
Identity = 94/199 (47.24%), Postives = 127/199 (63.82%), Query Frame = 1


Query: 1   MPSSPPPPSPV--PDYSS--WSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRP 60
           + SSPPP S     D+ S  W+P+ I  ++ +CIV ++ S Y+++K+LC  L+ L   R 
Sbjct: 4   LTSSPPPVSEFHPEDFPSQQWNPYVIGPLIAMCIVVVIFSYYKIIKRLCCALNTLTFSRN 63

Query: 61  TVQFEE-NPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEG 120
            VQ    +  +PSLQ   HGLE+ ++  LPISQFKK +E E T   N+ECAVCLGEFEEG
Sbjct: 64  HVQTRHLSVEDPSLQYQSHGLESIVMDSLPISQFKKEKEQEETRQSNSECAVCLGEFEEG 123

Query: 121 ELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSAMLETLGRENVLRE 180
           E +KHLPNC H FH  CID WF+ HSSCPLCR  V   S    S + ++E+L RE+   +
Sbjct: 124 EWLKHLPNCAHVFHVACIDTWFQTHSSCPLCRSLVYENSI---SINTLIESLQREDFFHQ 183

Query: 181 RVAHYQTLRAQILQHPEFR 195
           R  +YQ LR+QI ++   R
Sbjct: 184 RAEYYQILRSQIFRNSATR 199

[Close]

BLAST of Cucsa.379840 vs. NCBI nr
Match: gi|1009173039|ref|XP_015867601.1| (PREDICTED: putative RING-H2 finger protein ATL53 [Ziziphus jujuba])

HSP 1 Score: 170.6 bits (431), Expect = 2.8e-39
Identity = 86/194 (44.33%), Postives = 119/194 (61.34%), Query Frame = 1


Query: 1   MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF 60
           MP +P     +   S W+PW I+++  +CIV +L S  R++K  C  +     GR  +  
Sbjct: 1   MPMNPVTSQELKP-SHWNPWVITSVATICIVIILFSYLRIIKTFCNNISRNQDGRRLLNV 60

Query: 61  EENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTS-FNTECAVCLGEFEEGELIK 120
             NP++PSLQ H HGL+ S +  LPI+QFKK+ + +S  +  N +CAVCLGEFEEGE ++
Sbjct: 61  S-NPDDPSLQFHSHGLDFSFVHSLPITQFKKDNQGKSEMAQSNMDCAVCLGEFEEGEWLR 120

Query: 121 HLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSAM---LETLGRENVLRER 180
           HL NC H FH  CID W   +S+CP+CR +V         S++M   LETL RE+  RER
Sbjct: 121 HLTNCKHVFHISCIDTWCLTNSNCPICRSEVYGLGLDHEYSASMYTLLETLTREDFFRER 180

Query: 181 VAHYQTLRAQILQH 191
             HYQ LR+ ILQ+
Sbjct: 181 AEHYQFLRSTILQN 192

[Close]

BLAST of Cucsa.379840 vs. NCBI nr
Match: gi|703161912|ref|XP_010112917.1| (RING-H2 finger protein ATL16 [Morus notabilis])

HSP 1 Score: 170.2 bits (430), Expect = 3.7e-39
Identity = 86/190 (45.26%), Postives = 122/190 (64.21%), Query Frame = 1


Query: 16  SWSPWSISTIVVVCIVFLLLSNYRLLKQLC---RVLHGLFTGRPTVQF--EENPNNPSLQ 75
           S +PW I+++V++C + +L S  R++   C   + ++    G P  Q   E N ++PSL+
Sbjct: 2   SSNPWLIASVVMICAIIILFSYLRIVVLFCWPPQRINFSRNGVPRRQLLDESNTDDPSLR 61

Query: 76  IHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHS 135
              HGLE S +  LPI+QFK+  E E   + +T+CAVCLGEF+EGE ++HLP+C+HSFH 
Sbjct: 62  FDSHGLEFSTMHSLPITQFKEESEGEMNKTRSTDCAVCLGEFKEGEWLRHLPSCSHSFHI 121

Query: 136 PCIDAWFRNHSSCPLCRLQVLSFSTPDSSS----SAMLETLGRENVLRERVAHYQTLRAQ 195
            CID WF NH++CPLCR +V S    D  S     +  +TL RE+  RER AHY+ LR+Q
Sbjct: 122 SCIDTWFLNHANCPLCRTEVQSLKLEDLESPVSHHSPPQTLRREDFFRERAAHYELLRSQ 181

Query: 196 ILQHPEFRRD 197
           ILQ+   RRD
Sbjct: 182 ILQNSVSRRD 191

The following BLAST results are available for this feature:

BLAST of Cucsa.379840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL52_ARATH	4.1e-22	34.94	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1	[more]
ATL16_ARATH	1.5e-19	34.13	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2 SV=1	[more]
ATL55_ARATH	1.5e-19	34.67	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55 PE=1 SV=1	[more]
ATL51_ARATH	3.3e-19	34.29	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2	[more]
ATL41_ORYSJ	7.2e-19	31.09	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica GN=Os04...	[more]

BLAST of Cucsa.379840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCA5_CUCSA	3.6e-118	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G303210 PE=4 SV=1	[more]
A0A067L6V3_JATCU	2.5e-42	47.24	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05653 PE=4 SV=1	[more]
W9SMD5_9ROSA	2.6e-39	45.26	RING-H2 finger protein ATL16 OS=Morus notabilis GN=L484_010848 PE=4 SV=1	[more]
A0A068UMZ3_COFCA	1.3e-38	44.50	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028155001 PE=4 SV=1	[more]
A0A061GXP2_THECC	1.7e-38	44.39	RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_041911 PE=4 S...	[more]

BLAST of Cucsa.379840 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G17600.1	2.3e-23	34.94	RING/U-box superfamily protein	[more]
AT5G10380.1	8.2e-21	34.67	RING/U-box superfamily protein	[more]
AT5G43420.1	8.2e-21	34.13	RING/U-box superfamily protein	[more]
AT3G03550.1	1.8e-20	34.29	RING/U-box superfamily protein	[more]
AT1G04360.1	2.6e-19	34.52	RING/U-box superfamily protein	[more]

BLAST of Cucsa.379840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192151\|gb\|KGN47355.1\|	5.2e-118	100.00	hypothetical protein Csa_6G303210 [Cucumis sativus]	[more]
gi\|659095050\|ref\|XP_008448367.1\|	4.1e-107	91.75	PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo]	[more]
gi\|802554877\|ref\|XP_012065136.1\|	3.6e-42	47.24	PREDICTED: RING-H2 finger protein ATL66-like [Jatropha curcas]	[more]
gi\|1009173039\|ref\|XP_015867601.1\|	2.8e-39	44.33	PREDICTED: putative RING-H2 finger protein ATL53 [Ziziphus jujuba]	[more]
gi\|703161912\|ref\|XP_010112917.1\|	3.7e-39	45.26	RING-H2 finger protein ATL16 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.379840.1	Cucsa.379840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 104..147 score: 3.9
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 105..146 score: 2.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 105..147 score: 1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 103..150 score: 3.2
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 1..172 score: 2.2
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 104..152 score: 1.67

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.379840	Cla013278	Watermelon (97103) v1	cgywmB687
Cucsa.379840	Csa6G303210	Cucumber (Chinese Long) v2	cgycuB533
Cucsa.379840	MELO3C013674	Melon (DHL92) v3.5.1	cgymeB617
Cucsa.379840	ClCG02G020470	Watermelon (Charleston Gray)	cgywcgB648
Cucsa.379840	CSPI06G16710	Wild cucumber (PI 183967)	cgycpiB561
Cucsa.379840	CmaCh20G004320	Cucurbita maxima (Rimu)	cgycmaB1047
Cucsa.379840	CmoCh20G004700	Cucurbita moschata (Rifu)	cgycmoB1046
Cucsa.379840	Lsi10G013440	Bottle gourd (USVL1VR-Ls)	cgylsiB614
Cucsa.379840	MELO3C013674.2	Melon (DHL92) v3.6.1	cgymedB613
Cucsa.379840	CsaV3_6G022150	Cucumber (Chinese Long) v3	cgycucB577
Cucsa.379840	Cla97C02G046440	Watermelon (97103) v2	cgywmbB652
Cucsa.379840	Bhi10G000535	Wax gourd	cgywgoB758
Cucsa.379840	Carg03292	Silver-seed gourd	carcgyB0402

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.379840	Melon (DHL92) v3.6.1	cgymedB615
Cucsa.379840	Silver-seed gourd	carcgyB0362
Cucsa.379840	Silver-seed gourd	carcgyB0986
Cucsa.379840	Cucumber (Chinese Long) v3	cgycucB576
Cucsa.379840	Watermelon (97103) v2	cgywmbB653
Cucsa.379840	Watermelon (97103) v2	cgywmbB654
Cucsa.379840	Cucumber (Gy14) v1	cgycgyB019
Cucsa.379840	Cucurbita maxima (Rimu)	cgycmaB1048
Cucsa.379840	Cucurbita maxima (Rimu)	cgycmaB1049
Cucsa.379840	Cucurbita moschata (Rifu)	cgycmoB1047
Cucsa.379840	Cucurbita moschata (Rifu)	cgycmoB1048
Cucsa.379840	Wild cucumber (PI 183967)	cgycpiB560
Cucsa.379840	Cucumber (Chinese Long) v2	cgycuB531
Cucsa.379840	Cucumber (Chinese Long) v2	cgycuB532
Cucsa.379840	Melon (DHL92) v3.5.1	cgymeB616
Cucsa.379840	Melon (DHL92) v3.5.1	cgymeB619
Cucsa.379840	Melon (DHL92) v3.5.1	cgymeB620
Cucsa.379840	Watermelon (Charleston Gray)	cgywcgB649
Cucsa.379840	Watermelon (Charleston Gray)	cgywcgB650
Cucsa.379840	Watermelon (97103) v1	cgywmB684
Cucsa.379840	Watermelon (97103) v1	cgywmB685
Cucsa.379840	Cucurbita pepo (Zucchini)	cgycpeB1002
Cucsa.379840	Cucurbita pepo (Zucchini)	cgycpeB1003
Cucsa.379840	Bottle gourd (USVL1VR-Ls)	cgylsiB615
Cucsa.379840	Bottle gourd (USVL1VR-Ls)	cgylsiB616