Cucsa.377770 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.377770
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRNA-binding protein 28
Locationscaffold03806 : 257495 .. 261310 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAAGATGTTCACCGCCAAGTGAGAGATGTTGGTGGCGTATGCTCAATTGTCTATCCTCTTCCCAGAAAAGAAGTTGAACAACATGGTACATTAGAATCATGTCTTTTGTTTTtATGTGCATGGGTAGTAGTTATTTTTtATTATTAGTTTTTtGTCTATACATAAAAaGGgAAAAAAaGATTAGAATATAATTATTCGTGTTCCTGCTGTTTTTGCTCTAGAGCACTGTGGATAGGGATAGGTTGTATTAATATCTGGTTTCTGTTGAAGTAGTCAATTGGATTTGGTTAAGTTATTGTTCTTGATGACATCAGGTTCATGTTAATGTGTCACTACGATTAAAATTGAATTCATTATACCCTGAGCAGTGTTTGCCCAACTTCACAGTTGCCTGTTGTACTTGATAGATTGTCTCTGCAATATGTTTAGCAAATTTGTTTTTAGACTGAAGTTCCAAATGCATTTTCCTCAATGATTGATTGATTATATTTATATTTTTTtCTCTAGACTCTCATAACTGAACTCAGAAGACCAGTTTTCTTCTCTTCTTATGCCAATGGATCGAGTGTGTATCTAGTGTTTCAAGTTCATTATGGTGGTGGATTTGTTATCTTTGATAGTTTGAAGTTAGTAAAAATGATTTCTCAGAAGGTCTTAATTAGTCTGTAAATTCATCATGATATTTCATTTATTAGTTTCAAATGAAATTTCAGGTATTTTACGAGATGGATGCAAAATGGATGTCTCTGCTGTACTTTTTGATAGTGTGAAGTCTGCACGTGCTGCTGTTGCTATATTACACCAGAAAGAGATGAAAGGAGGTGTTGTATGGGCTCGCCAACTGGGTGGGGAGGTGAATCATACATAAAACTTTACTGTGAACATCTTTTTATCTTTGTCAAGTATTTACATCTTCTTAAATGGGTTACACTAACTCTGTGCCCTTGAAATAATACAAGACCATGGTCAAACCTTTTAGCTGTGTACTCTCCTGTCTTCATTTTATTTTTAGTTTtTTTTtAAATCATACTTCATTTGCATTTGTTTTCCTCGTATGAATATTTTGTTGAACATTTGTAGATCTTGTCATTGCAAAGGTGAATTCCTCAAGTACCTTTTGTTCTCCTCGATATATTATAGGACCAGTACAAATAGCTCAAATAATATCTATCCATAATATGGTATCTGTTAGCAAATCTATCATCGAATGTTTGGTGAGACCTGGTGGAAATTGAAGATAATGGAGTACTCCAAAATTTTTAAGAAAAGAGAGCATTAGATGAATCAATTTTGAGCATTTGTTTTTGTCAGTTCCTTGATAGCTTCTATATAGGGTCACCTTGGTAAGAGGGAAGGATATCACGTTTGAATTTGATCTTACATCATTTCTGTCAATAAAAAGTATATGAAGATTTTGATTTTTGGGGCGTTTTTGGAATGAGCTTTTAAGTATTGGAAGAAGCAACCTCCTGTGTGGCTTTAAGATTGTGGAAGACAGATTTGCAGTAGAAAACACTGGAAGATCCAAGTTCCCTCTTTTGTTGTCTCACTCATATGAACTTGGTCCAGAGGCCTATTATAAGCATCATCTCTACCCATCCCCATCACATTCCATTAAATTTCTTCTGAAACCAATAGACTTCAGTTCTTCCTAGTACTTAAGCAGTTAAAAATATGTTTATCCTTACTTCCAGTTAAAGCTTGAGCCTTGGAATATGGCATCCAATAATGATGGCCTATTCTCCACTAAATGTCCTATGGAAATCTGATTGAGGTATCATCTTCCACAATAGAAGTCAGTTTCGTTAGATTCTGGCGCAATTTGCATTGATGCTCTTTTACAGCTAAATTGTTAGATATCTTAGATAGGAGTGTTTCTTAGAGTTTTGTCAATCTTCTTATTTTTGAGTTATTAGCAAATCTCATTCTTTGATGTAAGAAATTCTATTCTGAATGATTTTTTCAAAAGGGTTGGCCGTGGCTAAGGAGGATTTGGTAGCTTTTGAGGAAAAATTTAAAACTAAAATTGATAATGGCATGGATTGGTCCTTTCCAAGGGTCGTAGACTTACTCTTGCTCTATTGGTTCTTCAAAGTTTACCTTGTTACTTTTTCTCCTTATTGAAGGCTCCAAAGGGATTTATTTCTCAAGTGGAAAAGCTAATTCAGGACTTTGTTTGGGGTGGTGGTATTGGTAAACCAGACTCCCATCTTGTAAGCTGGAAGTAGACCTCTCTCCCCACGATTTACTAGGGGTTGGGAATCGGCTCTCTTAATCAGAAGAATTCTGCTCTCTTGTTGGCTTTGGAGGTTTTGTCACGAAGAAAACACCTTGTGGTGAGGAAAGTGATTAGAGCTATCTGCGTGGAGGAGCATGGGTGGAGTTCTGTAAAGCCAAAAGACAAAGGCTGCTTCAGATTTTGGAATGGCATTTTAAAACAAAaGGAACAATTTGATACCTTTGTTGATTTTGTGGTGGGTGATGGGTTTTGGGAGGATAGATGGTGTGCTGCCCAACCTCTTCCTTCCTTGTACCATGACATCTACCCTATTTCCTCAAAAAAGAATGTTGTGGTGGCAGATTGATTTAAGTCAAGCTTGGGATCTTGGGTTGAGAAGGAGATTGTTTGATAGAGAAATTGGCAATTGTATTACTCTTTTTCAGATGCTAACTGATTGGGTGGTGAATAGAGCGAAGGACAACTTATATGGAGGTTGGAATCTTTGGGCCAGTTTTCTACCAAATCTACTTCCCTCAAGTTGACCAATAGGGCTACTAAAGTTAATCTACCTTTGGTTAATCTTATGTGGAAACCAAAAATTCCTAGAAAaCGAAGTTTTtACTTTGGTCCTTCGCCTATGGAAGTCTCAAACACCCAGGAAAAGCTCAAAGGAAGTTTCCTAATTGGAATCTTTCCCCTTCCATGTGCCTGCTTTGCCAGAAGGAGGTTGAGACTTTAAATTACCTTTTTTACACTGTGAGTTTGCATCCAAAGGGCGAAATAGGAACTTTGAGGCTTTTGGGTGGATGGGTGTCTCCAGTTGCGAATTGATGTCTGGATGATGGAGGGTTTGTATGGGGGTGGCTTTAGTGGAAAAGGAAATATTTTATGGAGTTGTGCAACCCACGCTCTCTTATGACATCTTTGGAATGAAAGAAATATTAGGATGGTCGACAATAAGTTTAGTTCTTTTGATTCTTTTTGGGCTCTTGTGCATCATATGGCCTCTTGGTGTTGTACAAACTACAGTAAGTTATTCTTGTTGATTTCTATAAATATATATATCTGTGTCTGTTTTTTAAAAAATAGAAGGGTTTCTTATGTGCCTAAAATCCTTATGCATCAATACCTAATTTTTTGAATCTTAGGTTTAGATGGCTTGCCAAGTATATGGCGTTTGTTTGCCATAGCTAAGGACTTCTATAATTATCTTGTATGGTCCAGTCTATTTAGTTAGGGTCTTTATATTATTGAAGTGTCAAATGTTATGCTCCAATCACTCATAATCTGATCTCATAGTTGCTTATTTATTTTTATTTTTCAGTTGCCTTGGATGGTCTAAAATTTTCTGTATTTGTTTtCTTTGCAGGGGTCCAAAACTCAGAAATGGAAAGTTATTGTTAGAAATCTTCCATTTAAGGTTACATGTTACACAATAAGCAATTGTCATACTTTCTTATGACAACAGGTTGACTAAGCAAGCTTTTTACACATTGATGCAGGCCAAGGAGAAAGAAATAAAGAATACCTTTTCATCTGCGGGATTTGTGTGGGATGTGATGATGCCACAAAATTCAGACACTGGGTAA

mRNA sequence

ATGGCTGAAGATGTTCACCGCCAAGTGAGAGATGTTGGTGGCGTATGCTCAATTGTCTATCCTCTTCCCAGAAAAGAAGTTGAACAACATGGTACATTAGAATCATGTCTTTTGTTTTTATGTGCATGGggtcgtagacttactcttgctctattggttcttcaaagtttaccttgttactttttctccttattgaaggctccaaagggatttatttctcaagtggaaaagctaattcaggactttgtttggggtggtggtattggtaaaccagactcccatcttgggttgggaatcggctctcttaatcagaagaattctgctctcttgttggctttggaggttttgtcacgaagaaaacaccttgtggtgaggaaagtgattagagctatctgcgtggaggagcatgggtggagttctgtaaagccaaaagacaaaggctgcttcagattttggaatggcattttaaaacaaaaggaacaatttgatacctttgttgattttgtggtgggtgatgggttttgggaggatagatggtgtgctgcccaacctcttCCTTCCTTGTACCATGACATCTACCCTATTTCCTCAAAAAAGAATGTTGTGGCCAAGGAGAAAGAAATAAAGAATACCTTTTCATCTGCGGGATTTGTGTGGGATGTGATGATGCCACAAAATTCAGACACTGGGTAA

Coding sequence (CDS)

ATGGCTGAAGATGTTCACCGCCAAGTGAGAGATGTTGGTGGCGTATGCTCAATTGTCTATCCTCTTCCCAGAAAAGAAGTTGAACAACATGGTACATTAGAATCATGTCTTTTGTTTTtATGTGCATGGGGTCGTAGACTTACTCTTGCTCTATTGGTTCTTCAAAGTTTACCTTGTTACTTTTTCTCCTTATTGAAGGCTCCAAAGGGATTTATTTCTCAAGTGGAAAAGCTAATTCAGGACTTTGTTTGGGGTGGTGGTATTGGTAAACCAGACTCCCATCTTGGGTTGGGAATCGGCTCTCTTAATCAGAAGAATTCTGCTCTCTTGTTGGCTTTGGAGGTTTTGTCACGAAGAAAACACCTTGTGGTGAGGAAAGTGATTAGAGCTATCTGCGTGGAGGAGCATGGGTGGAGTTCTGTAAAGCCAAAAGACAAAGGCTGCTTCAGATTTTGGAATGGCATTTTAAAACAAAaGGAACAATTTGATACCTTTGTTGATTTTGTGGTGGGTGATGGGTTTTGGGAGGATAGATGGTGTGCTGCCCAACCTCTTCCTTCCTTGTACCATGACATCTACCCTATTTCCTCAAAAAAGAATGTTGTGGCCAAGGAGAAAGAAATAAAGAATACCTTTTCATCTGCGGGATTTGTGTGGGATGTGATGATGCCACAAAATTCAGACACTGGGTAA

Protein sequence

MAEDVHRQVRDVGGVCSIVYPLPRKEVEQHGTLESCLLFLCAWGRRLTLALLVLQSLPCYFFSLLKAPKGFISQVEKLIQDFVWGGGIGKPDSHLGLGIGSLNQKNSALLLALEVLSRRKHLVVRKVIRAICVEEHGWSSVKPKDKGCFRFWNGILKQKEQFDTFVDFVVGDGFWEDRWCAAQPLPSLYHDIYPISSKKNVVAKEKEIKNTFSSAGFVWDVMMPQNSDTG*
Homology
[Close]
BLAST of Cucsa.377770 vs. TrEMBL
Match: A5BHC2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018453 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.5e-16
Identity = 64/182 (35.16%), Postives = 87/182 (47.80%), Query Frame = 1 

Query: 44  GRRLTLALLVLQSLPCYFFSLLKAPKGFISQVEKLIQDFVWGGGIGKPDSHL-------- 103
           G R+TL    L +LP YF S+ + P+    ++EK+ +DF+WG G  +   HL        
Sbjct: 35  GGRITLVRSTLSNLPIYFMSIFQMPRVVRIRLEKIQRDFLWGXGALEQKPHLVRWSIVCL 94

Query: 104 -----GLGIGSLNQKNSALL--LALEVLSRRKHLVVRKVIRAICVEEH-GWSSVKPKDKG 163
                GLG+ SL   N ALL        + RK L   +VIR    EE  GW S + K+  
Sbjct: 95  DKRSGGLGVKSLGAFNRALLGKWVWRFANERKAL-WNQVIRGKHGEERGGWRSCESKEAH 154

Query: 164 CFRFWNGILKQKEQFDTFVDFVVGDG----FWEDRWCAAQPLPSLYHDIYPISSKKNVVA 206
            F  W  I K   Q   FV FVVGDG    FW+D+WC   PL   +  ++ ++S K    
Sbjct: 155 GFGLWKAISKMGHQVTPFVGFVVGDGEKVKFWKDKWCETIPLCEAFPSLFALASNKEAWV 214

[Close]
BLAST of Cucsa.377770 vs. TrEMBL
Match: A5AV27_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022223 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.6e-16
Identity = 63/182 (34.62%), Postives = 86/182 (47.25%), Query Frame = 1 

Query: 44   GRRLTLALLVLQSLPCYFFSLLKAPKGFISQVEKLIQDFVWGGGIGKPDSHL-------- 103
            G R+TL    L +LP YF S+ + P+    ++EK+ +DF+WGGG      HL        
Sbjct: 1591 GGRITLVRSTLSNLPIYFMSIFQMPRVVRIRLEKIQRDFLWGGGALVQKPHLVNWSIVCL 1650

Query: 104  -----GLGIGSLNQKNSALL--LALEVLSRRKHLVVRKVIRAICVEEH-GWSSVKPKDKG 163
                 GLG+  L   N ALL        + RK L   +VIR    EE  GW S + ++  
Sbjct: 1651 DKRSGGLGVKXLGAFNRALLGKWVWRFANERKAL-WNQVIRGKYGEERGGWRSCESREAY 1710

Query: 164  CFRFWNGILKQKEQFDTFVDFVVGDG----FWEDRWCAAQPLPSLYHDIYPISSKKNVVA 206
             F  W  I K   Q   FV FVVGDG    FW+D+WC   PL   +  ++ ++S K    
Sbjct: 1711 GFGLWKAISKMGHQVTPFVGFVVGDGEKVKFWKDKWCETIPLSEAFPSLFALASNKEAWV 1770

[Close]
BLAST of Cucsa.377770 vs. TrEMBL
Match: A5AE31_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020834 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.8e-15
Identity = 62/179 (34.64%), Postives = 85/179 (47.49%), Query Frame = 1 

Query: 44   GRRLTLALLVLQSLPCYFFSLLKAPKGFISQVEKLIQDFVWGGGIGKPDSHL-------- 103
            G RLTL    L SLP YF SL   PK   +++EK+ +DF+WGGG  +   HL        
Sbjct: 1484 GGRLTLLKSTLSSLPTYFLSLFVIPKRVCARLEKIQRDFLWGGGALEKKPHLVSWKAVCA 1543

Query: 104  -----GLGIGSLNQKNSALL------LALEVLSRRKHLVVRKVIRAICVEEHGWSSVKPK 163
                 GLGI SL   N ALL       A E     KH+++ K      ++E GW S   +
Sbjct: 1544 DKKKGGLGIRSLATFNKALLGKWLWRFANENEPLWKHIILSK----YDLQEGGWCSKDAR 1603

Query: 164  DKGCFRFWNGILKQKEQFDTFVDFVVGDG----FWEDRWCAAQPLPSLYHDIYPISSKK 200
            ++     W  I K  E F +   F++GDG    FW+D WC  Q L   +  ++ +S  K
Sbjct: 1604 NRYGVGVWKAIRKGWENFRSHSRFIIGDGTRVKFWKDLWCGNQSLEEAFPILFNLSVNK 1658

[Close]
BLAST of Cucsa.377770 vs. TrEMBL
Match: A5BYN2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031525 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 58/176 (32.95%), Postives = 82/176 (46.59%), Query Frame = 1 

Query: 44   GRRLTLALLVLQSLPCYFFSLLKAPKGFISQVEKLIQDFVWGGGIGKPDSHL-------- 103
            G RLTL    L SLP YF SL   P+    ++EK+ +DF+WGGG  +   HL        
Sbjct: 1065 GGRLTLVKSTLSSLPIYFMSLFIIPRKVSPRLEKIQRDFLWGGGASQSKPHLVNWSIVCI 1124

Query: 104  -----GLGIGSLNQKNSALL--LALEVLSRRKHLVVRKVIRAICVEEHGWSSVKPKDKGC 163
                 GLGI +L++ N ALL        S +  L  + ++R    E+  W S   ++   
Sbjct: 1125 EKKDGGLGIRNLSRLNKALLGKWCWRFASEQDSLWKQVIVRKFGEEDGRWCSGDSRESHG 1184

Query: 164  FRFWNGILKQKEQFDTFVDFVVGDG----FWEDRWCAAQPLPSLYHDIYPISSKKN 201
               W  I  +  +F   V F VGDG    FW+DRWC    L      +Y ++S K+
Sbjct: 1185 VGLWKVIRNRWMEFSKRVAFKVGDGKRVRFWKDRWCGEDSLEEAIPRLYYLASSKD 1240

[Close]
BLAST of Cucsa.377770 vs. TrEMBL
Match: A5BV49_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001198 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-14
Identity = 62/180 (34.44%), Postives = 85/180 (47.22%), Query Frame = 1 

Query: 44  GRRLTLALLVLQSLPCYFFSLLKAPKGFISQVEKLIQDFVWGGGIGKPDSHL-------- 103
           G RLTL    L SLP YF SL   PK   +++EK+ +DF+WGGG  +   HL        
Sbjct: 598 GGRLTLLKSTLSSLPTYFLSLFVIPKKVCARLEKIQRDFLWGGGALENKPHLVSWKAICA 657

Query: 104 -----GLGIGSLNQKNSALL------LALEVLSRRKHLVVRKVIRAICVEEHGWSSVKPK 163
                GLGI SL+  N ALL       A E  S  K ++  K      ++E GW S   +
Sbjct: 658 TKKEGGLGIRSLSTFNKALLGKWLWRFANENESLWKQIISSK----YDLQEGGWCSKGVR 717

Query: 164 DKGCFRFWNGILKQKEQFDTFVDFVVGDG----FWEDRWCAAQPLPSLYHDIYPISSKKN 201
           D+     W  I    E F +   F++GDG    FW+D WC  Q L   +  ++ +S  K+
Sbjct: 718 DRYGVGVWKAIRNGWENFRSHSRFIIGDGTRVKFWKDLWCXNQALEEAFPILFNLSVNKD 773

[Close]
BLAST of Cucsa.377770 vs. NCBI nr
Match: gi|147815028|emb|CAN74573.1| (hypothetical protein VITISV_018453 [Vitis vinifera])

HSP 1 Score: 94.7 bits (234), Expect = 2.2e-16
Identity = 64/182 (35.16%), Postives = 87/182 (47.80%), Query Frame = 1 

Query: 44  GRRLTLALLVLQSLPCYFFSLLKAPKGFISQVEKLIQDFVWGGGIGKPDSHL-------- 103
           G R+TL    L +LP YF S+ + P+    ++EK+ +DF+WG G  +   HL        
Sbjct: 35  GGRITLVRSTLSNLPIYFMSIFQMPRVVRIRLEKIQRDFLWGXGALEQKPHLVRWSIVCL 94

Query: 104 -----GLGIGSLNQKNSALL--LALEVLSRRKHLVVRKVIRAICVEEH-GWSSVKPKDKG 163
                GLG+ SL   N ALL        + RK L   +VIR    EE  GW S + K+  
Sbjct: 95  DKRSGGLGVKSLGAFNRALLGKWVWRFANERKAL-WNQVIRGKHGEERGGWRSCESKEAH 154

Query: 164 CFRFWNGILKQKEQFDTFVDFVVGDG----FWEDRWCAAQPLPSLYHDIYPISSKKNVVA 206
            F  W  I K   Q   FV FVVGDG    FW+D+WC   PL   +  ++ ++S K    
Sbjct: 155 GFGLWKAISKMGHQVTPFVGFVVGDGEKVKFWKDKWCETIPLCEAFPSLFALASNKEAWV 214

[Close]
BLAST of Cucsa.377770 vs. NCBI nr
Match: gi|147772257|emb|CAN60637.1| (hypothetical protein VITISV_022223 [Vitis vinifera])

HSP 1 Score: 94.0 bits (232), Expect = 3.7e-16
Identity = 63/182 (34.62%), Postives = 86/182 (47.25%), Query Frame = 1 

Query: 44   GRRLTLALLVLQSLPCYFFSLLKAPKGFISQVEKLIQDFVWGGGIGKPDSHL-------- 103
            G R+TL    L +LP YF S+ + P+    ++EK+ +DF+WGGG      HL        
Sbjct: 1591 GGRITLVRSTLSNLPIYFMSIFQMPRVVRIRLEKIQRDFLWGGGALVQKPHLVNWSIVCL 1650

Query: 104  -----GLGIGSLNQKNSALL--LALEVLSRRKHLVVRKVIRAICVEEH-GWSSVKPKDKG 163
                 GLG+  L   N ALL        + RK L   +VIR    EE  GW S + ++  
Sbjct: 1651 DKRSGGLGVKXLGAFNRALLGKWVWRFANERKAL-WNQVIRGKYGEERGGWRSCESREAY 1710

Query: 164  CFRFWNGILKQKEQFDTFVDFVVGDG----FWEDRWCAAQPLPSLYHDIYPISSKKNVVA 206
             F  W  I K   Q   FV FVVGDG    FW+D+WC   PL   +  ++ ++S K    
Sbjct: 1711 GFGLWKAISKMGHQVTPFVGFVVGDGEKVKFWKDKWCETIPLSEAFPSLFALASNKEAWV 1770

[Close]
BLAST of Cucsa.377770 vs. NCBI nr
Match: gi|731440226|ref|XP_010646830.1| (PREDICTED: uncharacterized protein LOC104878337, partial [Vitis vinifera])

HSP 1 Score: 90.5 bits (223), Expect = 4.1e-15
Identity = 63/206 (30.58%), Postives = 94/206 (45.63%), Query Frame = 1 

Query: 44  GRRLTLALLVLQSLPCYFFSLLKAPKGFISQVEKLIQDFVWGGGIGKPDSHL-------- 103
           G R+TL    L S+P Y  SL + PK  + ++EKL +DF+WGGG  +   HL        
Sbjct: 252 GGRITLIKSTLASIPIYQMSLFRMPKIVVRRLEKLQRDFLWGGGNMERKVHLVKWEIVCG 311

Query: 104 -----GLGIGSLNQKNSALL--LALEVLSRRKHLVVRKVIRAICVEEHGWSSVKPKDKGC 163
                GLG+  L   N ALL          R++L  + ++     EE+GW S KP     
Sbjct: 312 DKGRGGLGLRKLGLLNKALLGKWIWRFACDRENLWKQVILAKFGQEEYGWRSKKPNGAFG 371

Query: 164 FRFWNGILKQKEQFDTFVDFVVGDG----FWEDRWCAAQPLPSLYHDIYPISSKKNVVAK 223
              W  I+K+ +     ++F+VG G    FW D WCA   L   +  ++ +++ +N   +
Sbjct: 372 VGLWKEIMKETDWCWDNLEFMVGKGTKIRFWTDVWCAGTALSQTFPHLFALAANRNATVE 431

Query: 224 EKEIKNTFSSAGFVWDVMMPQNSDTG 231
           E            +WD    QNSD G
Sbjct: 432 E------------MWD----QNSDQG 441

[Close]
BLAST of Cucsa.377770 vs. NCBI nr
Match: gi|147801054|emb|CAN77850.1| (hypothetical protein VITISV_020834 [Vitis vinifera])

HSP 1 Score: 90.1 bits (222), Expect = 5.4e-15
Identity = 62/179 (34.64%), Postives = 85/179 (47.49%), Query Frame = 1 

Query: 44   GRRLTLALLVLQSLPCYFFSLLKAPKGFISQVEKLIQDFVWGGGIGKPDSHL-------- 103
            G RLTL    L SLP YF SL   PK   +++EK+ +DF+WGGG  +   HL        
Sbjct: 1484 GGRLTLLKSTLSSLPTYFLSLFVIPKRVCARLEKIQRDFLWGGGALEKKPHLVSWKAVCA 1543

Query: 104  -----GLGIGSLNQKNSALL------LALEVLSRRKHLVVRKVIRAICVEEHGWSSVKPK 163
                 GLGI SL   N ALL       A E     KH+++ K      ++E GW S   +
Sbjct: 1544 DKKKGGLGIRSLATFNKALLGKWLWRFANENEPLWKHIILSK----YDLQEGGWCSKDAR 1603

Query: 164  DKGCFRFWNGILKQKEQFDTFVDFVVGDG----FWEDRWCAAQPLPSLYHDIYPISSKK 200
            ++     W  I K  E F +   F++GDG    FW+D WC  Q L   +  ++ +S  K
Sbjct: 1604 NRYGVGVWKAIRKGWENFRSHSRFIIGDGTRVKFWKDLWCGNQSLEEAFPILFNLSVNK 1658

[Close]
BLAST of Cucsa.377770 vs. NCBI nr
Match: gi|147791708|emb|CAN64017.1| (hypothetical protein VITISV_031525 [Vitis vinifera])

HSP 1 Score: 88.2 bits (217), Expect = 2.1e-14
Identity = 58/176 (32.95%), Postives = 82/176 (46.59%), Query Frame = 1 

Query: 44   GRRLTLALLVLQSLPCYFFSLLKAPKGFISQVEKLIQDFVWGGGIGKPDSHL-------- 103
            G RLTL    L SLP YF SL   P+    ++EK+ +DF+WGGG  +   HL        
Sbjct: 1065 GGRLTLVKSTLSSLPIYFMSLFIIPRKVSPRLEKIQRDFLWGGGASQSKPHLVNWSIVCI 1124

Query: 104  -----GLGIGSLNQKNSALL--LALEVLSRRKHLVVRKVIRAICVEEHGWSSVKPKDKGC 163
                 GLGI +L++ N ALL        S +  L  + ++R    E+  W S   ++   
Sbjct: 1125 EKKDGGLGIRNLSRLNKALLGKWCWRFASEQDSLWKQVIVRKFGEEDGRWCSGDSRESHG 1184

Query: 164  FRFWNGILKQKEQFDTFVDFVVGDG----FWEDRWCAAQPLPSLYHDIYPISSKKN 201
               W  I  +  +F   V F VGDG    FW+DRWC    L      +Y ++S K+
Sbjct: 1185 VGLWKVIRNRWMEFSKRVAFKVGDGKRVRFWKDRWCGEDSLEEAIPRLYYLASSKD 1240

The following BLAST results are available for this feature:
BLAST of Cucsa.377770 vs. TrEMBL
Match NameE-valueIdentityDescription
A5BHC2_VITVI1.5e-1635.16Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018453 PE=4 SV=1[more]
A5AV27_VITVI2.6e-1634.62Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022223 PE=4 SV=1[more]
A5AE31_VITVI3.8e-1534.64Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020834 PE=4 SV=1[more]
A5BYN2_VITVI1.4e-1432.95Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031525 PE=4 SV=1[more]
A5BV49_VITVI1.9e-1434.44Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001198 PE=4 SV=1[more]
BLAST of Cucsa.377770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147815028|emb|CAN74573.1|2.2e-1635.16hypothetical protein VITISV_018453 [Vitis vinifera][more]
gi|147772257|emb|CAN60637.1|3.7e-1634.62hypothetical protein VITISV_022223 [Vitis vinifera][more]
gi|731440226|ref|XP_010646830.1|4.1e-1530.58PREDICTED: uncharacterized protein LOC104878337, partial [Vitis vinifera][more]
gi|147801054|emb|CAN77850.1|5.4e-1534.64hypothetical protein VITISV_020834 [Vitis vinifera][more]
gi|147791708|emb|CAN64017.1|2.1e-1432.95hypothetical protein VITISV_031525 [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0044238 primary metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.377770.1Cucsa.377770.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.377770Cla015904Watermelon (97103) v1cgywmB679
Cucsa.377770Csa7G004090Cucumber (Chinese Long) v2cgycuB528
Cucsa.377770MELO3C013443Melon (DHL92) v3.5.1cgymeB612
Cucsa.377770ClCG02G004760Watermelon (Charleston Gray)cgywcgB643
Cucsa.377770CSPI07G00200Wild cucumber (PI 183967)cgycpiB557
Cucsa.377770CmoCh19G006940Cucurbita moschata (Rifu)cgycmoB1037
Cucsa.377770Cp4.1LG15g05540Cucurbita pepo (Zucchini)cgycpeB0992
Cucsa.377770MELO3C013443.2Melon (DHL92) v3.6.1cgymedB609
Cucsa.377770CsaV3_7G000160Cucumber (Chinese Long) v3cgycucB572
Cucsa.377770Cla97C02G031740Watermelon (97103) v2cgywmbB647
Cucsa.377770Bhi05G001124Wax gourdcgywgoB753
Cucsa.377770Carg19396Silver-seed gourdcarcgyB0372
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.377770Cucurbita pepo (Zucchini)cgycpeB0993
Cucsa.377770Cucurbita pepo (Zucchini)cgycpeB0994
Cucsa.377770Cucurbita pepo (Zucchini)cgycpeB0995
Cucsa.377770Cucurbita pepo (Zucchini)cgycpeB0996
Cucsa.377770Bottle gourd (USVL1VR-Ls)cgylsiB609
Cucsa.377770Bottle gourd (USVL1VR-Ls)cgylsiB610
Cucsa.377770Melon (DHL92) v3.6.1cgymedB608
Cucsa.377770Silver-seed gourdcarcgyB0215
Cucsa.377770Silver-seed gourdcarcgyB1100
Cucsa.377770Cucumber (Chinese Long) v3cgycucB571
Cucsa.377770Watermelon (97103) v2cgywmbB646
Cucsa.377770Wax gourdcgywgoB754
Cucsa.377770Cucumber (Gy14) v1cgycgyB058
Cucsa.377770Cucurbita maxima (Rimu)cgycmaB1037
Cucsa.377770Cucurbita maxima (Rimu)cgycmaB1038
Cucsa.377770Cucurbita maxima (Rimu)cgycmaB1039
Cucsa.377770Cucurbita maxima (Rimu)cgycmaB1040
Cucsa.377770Cucurbita moschata (Rifu)cgycmoB1036
Cucsa.377770Cucurbita moschata (Rifu)cgycmoB1038
Cucsa.377770Cucurbita moschata (Rifu)cgycmoB1039
Cucsa.377770Wild cucumber (PI 183967)cgycpiB556
Cucsa.377770Cucumber (Chinese Long) v2cgycuB527
Cucsa.377770Melon (DHL92) v3.5.1cgymeB611
Cucsa.377770Watermelon (Charleston Gray)cgywcgB642
Cucsa.377770Watermelon (97103) v1cgywmB680