Cucsa.375410 (gene) Cucumber (Gy14) v1

NameCucsa.375410
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold03746 : 441976 .. 442290 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTGGGCAATGGCAGGAGGTGTCGAGTGTGGTTGGATCCATGGATTCAGGGTGGTTCGATTATCCAGCAGTTTGAGGAGAGGGTGATCTATGATGCGGGTAGTCGGCGGGATACGAGGCTTGTGGATTTCATGGGTCTGGATGGTGAATGGAGATGGCCGCTTGTTTCTTTGGATTTGATGAATATTTGGGATAGGATTCAGAGAGTGACGTCGTGTTCGAGTGTTGAGGATAGGTGGGTCTGGGTGCCGGGTAGTTACGAGAGTTTTTCGATCACTAGTGCGTGGGAGACACTATTCGTCCTCATAGTA

mRNA sequence

atggaggtgggcaatggcaggaggtgtcgagtgtggttggatccatggattcagggtggttcgattatccagcagtttgaggagagggtgatctatgatgcgggtagtcggcgggatacgaggcttgtggatttcatgggtctggatggtgaatggagatggccgcttgtttctttggatttgatgaatatttgggataggattcagagagtgacgtcgtgttcgagtgttgaggataggtgggtctgggtgccgggtagttacgagagtttttcgatcactagtgcgtgggagacactattcgtcctcatagta

Coding sequence (CDS)

ATGGAGGTGGGCAATGGCAGGAGGTGTCGAGTGTGGTTGGATCCATGGATTCAGGGTGGTTCGATTATCCAGCAGTTTGAGGAGAGGGTGATCTATGATGCGGGTAGTCGGCGGGATACGAGGCTTGTGGATTTCATGGGTCTGGATGGTGAATGGAGATGGCCGCTTGTTTCTTTGGATTTGATGAATATTTGGGATAGGATTCAGAGAGTGACGTCGTGTTCGAGTGTTGAGGATAGGTGGGTCTGGGTGCCGGGTAGTTACGAGAGTTTTTCGATCACTAGTGCGTGGGAGACACTATTCGTCCTCATAGTA

Protein sequence

MEVGNGRRCRVWLDPWIQGGSIIQQFEERVIYDAGSRRDTRLVDFMGLDGEWRWPLVSLDLMNIWDRIQRVTSCSSVEDRWVWVPGSYESFSITSAWETLFVLIV
BLAST of Cucsa.375410 vs. NCBI nr
Match: gi|659116542|ref|XP_008458124.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 148.3 bits (373), Expect = 7.6e-33
Identity = 62/100 (62.00%), Postives = 79/100 (79.00%), Query Frame = 1

Query: 1   MEVGNGRRCRVWLDPWIQGGSIIQQFEERVIYDAGSRRDTRLVDFMGLDGEWRWPLVSLD 60
           M+VGNG RCRVWLDPW+QGG+I++Q  ERV+YDA SRR+ RL DF+  +GEW WP VSL+
Sbjct: 156 MKVGNGNRCRVWLDPWLQGGAILEQVGERVLYDAASRREARLSDFIDPNGEWLWPRVSLE 215

Query: 61  LMNIWDRIQRVTSCSSVEDRWVWVPGSYESFSITSAWETL 101
           L+++W+R+Q V+ C SV D WVWVPG    FSI SAWE +
Sbjct: 216 LIDLWERVQEVSPCLSVSDSWVWVPGRQGGFSIASAWEAI 255

BLAST of Cucsa.375410 vs. NCBI nr
Match: gi|659121154|ref|XP_008460525.1| (PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 136.0 bits (341), Expect = 3.9e-29
Identity = 59/100 (59.00%), Postives = 74/100 (74.00%), Query Frame = 1

Query: 1   MEVGNGRRCRVWLDPWIQGGSIIQQFEERVIYDAGSRRDTRLVDFMGLDGEWRWPLVSLD 60
           M+VGNG   RVWLDPW+  G+I++Q  ERV+YDA SRR  RL DF+  DGEW WP VSL+
Sbjct: 307 MKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLE 366

Query: 61  LMNIWDRIQRVTSCSSVEDRWVWVPGSYESFSITSAWETL 101
           L+++W+R+Q V+ C SV D WVWVPG    FSI SAWE +
Sbjct: 367 LIDLWERVQEVSPCLSVSDSWVWVPGRRGGFSIASAWEAV 406

BLAST of Cucsa.375410 vs. NCBI nr
Match: gi|659114595|ref|XP_008457134.1| (PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo])

HSP 1 Score: 118.6 bits (296), Expect = 6.4e-24
Identity = 50/84 (59.52%), Postives = 64/84 (76.19%), Query Frame = 1

Query: 17   IQGGSIIQQFEERVIYDAGSRRDTRLVDFMGLDGEWRWPLVSLDLMNIWDRIQRVTSCSS 76
            I  G I++Q  ERV YDA SRR+ RL DF+GLDGEW+WP VS++L+++WDR+Q V+ C S
Sbjct: 1048 IARGPILEQVGERVFYDAASRREARLSDFIGLDGEWQWPRVSMELIDLWDRVQAVSPCLS 1107

Query: 77   VEDRWVWVPGSYESFSITSAWETL 101
            V DRWVW+PG    FSI S WET+
Sbjct: 1108 VRDRWVWIPGRQGGFSIASTWETI 1131

BLAST of Cucsa.375410 vs. NCBI nr
Match: gi|778730244|ref|XP_011659736.1| (PREDICTED: uncharacterized protein LOC105436250 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 4.9e-16
Identity = 46/72 (63.89%), Postives = 51/72 (70.83%), Query Frame = 1

Query: 6   GRRCRVWLDPWIQ--------GGSIIQQFEERVIYDAGSRRDTRLVDFMGLDGEWRWPLV 65
           G RC   +  W+         GG IIQQF ERVIYDAGSR D RL+DFM +DGEWRWPLV
Sbjct: 202 GSRCGRSMLGWVDLGALGKSCGGPIIQQFGERVIYDAGSRWDARLMDFMDMDGEWRWPLV 261

Query: 66  SLDLMNIWDRIQ 70
           SLDLM+IWD IQ
Sbjct: 262 SLDLMDIWDMIQ 273

BLAST of Cucsa.375410 vs. NCBI nr
Match: gi|659102432|ref|XP_008452126.1| (PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 8.4e-16
Identity = 37/69 (53.62%), Postives = 51/69 (73.91%), Query Frame = 1

Query: 1   MEVGNGRRCRVWLDPWIQGGSIIQQFEERVIYDAGSRRDTRLVDFMGLDGEWRWPLVSLD 60
           M+VGNG RCRVWLDPW+Q G+I+++  ERV+YDA SRR+  L +F+G DGEW WP     
Sbjct: 723 MKVGNGNRCRVWLDPWLQRGAILERVGERVLYDAASRREASLSNFIGPDGEWLWPRGGFS 782

Query: 61  LMNIWDRIQ 70
           + + W+ I+
Sbjct: 783 IASAWEAIR 791

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659116542|ref|XP_008458124.1|7.6e-3362.00PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo][more]
gi|659121154|ref|XP_008460525.1|3.9e-2959.00PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucum... [more]
gi|659114595|ref|XP_008457134.1|6.4e-2459.52PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo][more]
gi|778730244|ref|XP_011659736.1|4.9e-1663.89PREDICTED: uncharacterized protein LOC105436250 [Cucumis sativus][more]
gi|659102432|ref|XP_008452126.1|8.4e-1653.62PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.375410.1Cucsa.375410.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None