Cucsa.375250 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.375250
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description60S ribosomal protein L34
Locationscaffold03746 : 155527 .. 155836 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCAGCGTCTTACATACCGCAAGCGCCATAACTATGCTACCAAGTCTAACCAGCACTGTGTCGTTAAAACCCCTGGTGTGAAGCACGTGTATCTGACTGCCAAGAAAAGTGCTAGCAGACCTAATAAGGTTATCGGCAAAAGGATTCAAGGGATTTCTCACTTGAGGCCAGCTAAATATAAGAGGACTAGACTAGCTAGGAATTGGAGGATTGTGAATCGTGCGTATGATGGCGTTTTATCTAGTAGTGCAGTGAGGGAGAGGATTATTCGAGCCTTTTTGGTTGAAGGGCAGAAGATTGTGAAGC

mRNA sequence

ATGGTGCAGCGTCTTACATACCGCAAGCGCCATAACTATGCTACCAAGTCTAACCAGCACTGTGTCGTTAAAACCCCTGGTGTGAAGCACGTGTATCTGACTGCCAAGAAAAGTGCTAGCAGACCTAATAAGGTTATCGGCAAAAGGATTCAAGGGATTTCTCACTTGAGGCCAGCTAAATATAAGAGGACTAGACTAGCTAGGAATTGGAGGATTGTGAATCGTGCGTATGATGGCGTTTTATCTAGTAGTGCAGTGAGGGAGAGGATTATTCGAGCCTTTTTGGTTGAAGGGCAGAAGATTGTGAAGC

Coding sequence (CDS)

ATGGTGCAGCGTCTTACATACCGCAAGCGCCATAACTATGCTACCAAGTCTAACCAGCACTGTGTCGTTAAAACCCCTGGTGTGAAGCACGTGTATCTGACTGCCAAGAAAAGTGCTAGCAGACCTAATAAGGTTATCGGCAAAAGGATTCAAGGGATTTCTCACTTGAGGCCAGCTAAATATAAGAGGACTAGACTAGCTAGGAATTGGAGGATTGTGAATCGTGCGTATGATGGCGTTTTATCTAGTAGTGCAGTGAGGGAGAGGATTATTCGAGCCTTTTTGGTTGAAGGGCAGAAGATTGTGAAGC

Protein sequence

MVQRLTYRKRHNYATKSNQHCVVKTPGVKHVYLTAKKSASRPNKVIGKRIQGISHLRPAKYKRTRLARNWRIVNRAYDGVLSSSAVRERIIRAFLVEGQKIVKX
Homology
[Close]
BLAST of Cucsa.375250 vs. Swiss-Prot
Match: RL34_TOBAC (60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.6e-35
Identity = 80/104 (76.92%), Postives = 86/104 (82.69%), Query Frame = 1 

Query: 1   MVQRLTYRKRHNYATKSNQHCVVKTPGVKHVYLTAKKSASRPN-KVIGKRIQGISHLRPA 60
           MVQRLTYRKRH+YATKSNQH VVKTPG K +Y + KK AS P   V GKRIQGI HLRP 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  KYKRTRLARNWRIVNRAYDGVLSSSAVRERIIRAFLVEGQKIVK 104
           +YKR+RL+RN R VNRAY GVLS SAVRERIIRAFLVE QKIVK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104

[Close]
BLAST of Cucsa.375250 vs. Swiss-Prot
Match: RL34_PEA (60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.8e-35
Identity = 80/104 (76.92%), Postives = 85/104 (81.73%), Query Frame = 1 

Query: 1   MVQRLTYRKRHNYATKSNQHCVVKTPGVKHVYLTAKKSASRPN-KVIGKRIQGISHLRPA 60
           MVQRLTYR+RH+YATKSNQH VVKTPG K VY T KK AS P   V GKRIQGI HLRP 
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  KYKRTRLARNWRIVNRAYDGVLSSSAVRERIIRAFLVEGQKIVK 104
           +YKR+RL+RN R VNRAY GVLS  AVRERIIRAFLVE QKIVK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVK 104

[Close]
BLAST of Cucsa.375250 vs. Swiss-Prot
Match: RL341_ARATH (60S ribosomal protein L34-1 OS=Arabidopsis thaliana GN=RPL34A PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 6.1e-35
Identity = 79/104 (75.96%), Postives = 85/104 (81.73%), Query Frame = 1 

Query: 1   MVQRLTYRKRHNYATKSNQHCVVKTPGVKHVYLTAKKSASRPN-KVIGKRIQGISHLRPA 60
           MVQRL YR RH+YATKSNQH +VKTPG K VY T KK AS P   V GKRIQGI HLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  KYKRTRLARNWRIVNRAYDGVLSSSAVRERIIRAFLVEGQKIVK 104
           +YKR+RL+RN R VNRAY GVLS SAVRERIIRAFLVE QKIVK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104

[Close]
BLAST of Cucsa.375250 vs. Swiss-Prot
Match: RL342_ARATH (60S ribosomal protein L34-2 OS=Arabidopsis thaliana GN=RPL34B PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.3e-34
Identity = 78/104 (75.00%), Postives = 83/104 (79.81%), Query Frame = 1 

Query: 1   MVQRLTYRKRHNYATKSNQHCVVKTPGVKHVYLTAKKSASRPN-KVIGKRIQGISHLRPA 60
           MVQRL YR RH+YATKSNQH +VKTPG K  Y T KK AS P   V GKRIQGI HLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  KYKRTRLARNWRIVNRAYDGVLSSSAVRERIIRAFLVEGQKIVK 104
           +YKR+RL+RN R VNRAY GVLS SAVRERIIRAFLVE QKIVK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104

[Close]
BLAST of Cucsa.375250 vs. Swiss-Prot
Match: RL343_ARATH (60S ribosomal protein L34-3 OS=Arabidopsis thaliana GN=RPL34C PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 8.9e-34
Identity = 77/104 (74.04%), Postives = 82/104 (78.85%), Query Frame = 1 

Query: 1   MVQRLTYRKRHNYATKSNQHCVVKTPGVKHVYLTAKKSASRPN-KVIGKRIQGISHLRPA 60
           MVQRL YR RH+YATKSNQH +VKTPG K  Y T  K AS P   V GKRIQGI HLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  KYKRTRLARNWRIVNRAYDGVLSSSAVRERIIRAFLVEGQKIVK 104
           +YKR+RLARN R VNRAY GVLS  AVRERI+RAFLVE QKIVK
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVK 104

[Close]
BLAST of Cucsa.375250 vs. TrEMBL
Match: A0A0A0LK03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G338890 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 7.3e-35
Identity = 84/104 (80.77%), Postives = 87/104 (83.65%), Query Frame = 1 

Query: 1   MVQRLTYRKRHNYATKSNQHCVVKTPGVKHVYLTAKKSASRPN-KVIGKRIQGISHLRPA 60
           MVQRLTYRKRH+YATKSNQH VVKTPG K VY T KK AS P   V GKRIQGI HLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  KYKRTRLARNWRIVNRAYDGVLSSSAVRERIIRAFLVEGQKIVK 104
           +YKR+RLARN R VNRAY GVLS SAVRERIIRAFLVE QKIVK
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104

[Close]
BLAST of Cucsa.375250 vs. TrEMBL
Match: A9P8R1_POPTR (Ribosomal protein L34 OS=Populus trichocarpa GN=POPTR_0012s11020g PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-34
Identity = 83/104 (79.81%), Postives = 87/104 (83.65%), Query Frame = 1 

Query: 1   MVQRLTYRKRHNYATKSNQHCVVKTPGVKHVYLTAKKSASRPN-KVIGKRIQGISHLRPA 60
           MVQRLTYRKRH+YATKSNQH VVKTPG K VY T KK AS P   V GKRIQGI HLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  KYKRTRLARNWRIVNRAYDGVLSSSAVRERIIRAFLVEGQKIVK 104
           +YKR+RL+RN R VNRAY GVLS SAVRERIIRAFLVE QKIVK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104

[Close]
BLAST of Cucsa.375250 vs. TrEMBL
Match: A0A0A0LP37_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009690 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-34
Identity = 83/104 (79.81%), Postives = 87/104 (83.65%), Query Frame = 1 

Query: 1   MVQRLTYRKRHNYATKSNQHCVVKTPGVKHVYLTAKKSASRPN-KVIGKRIQGISHLRPA 60
           MVQRLTYRKRH+YATKSNQH VVKTPG K VY T KK AS P   V GKRIQGI HLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  KYKRTRLARNWRIVNRAYDGVLSSSAVRERIIRAFLVEGQKIVK 104
           +YKR+RLARN R VNRAY GV+S SAVRERIIRAFLVE QKIVK
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVVSGSAVRERIIRAFLVEEQKIVK 104

[Close]
BLAST of Cucsa.375250 vs. TrEMBL
Match: A9PDF8_POPTR (Ribosomal protein L34 OS=Populus trichocarpa GN=POPTR_0017s11850g PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-34
Identity = 83/104 (79.81%), Postives = 87/104 (83.65%), Query Frame = 1 

Query: 1   MVQRLTYRKRHNYATKSNQHCVVKTPGVKHVYLTAKKSASRPN-KVIGKRIQGISHLRPA 60
           MVQRLTYRKRH+YATKSNQH VVKTPG K VY T KK AS P   V GKRIQGI HLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  KYKRTRLARNWRIVNRAYDGVLSSSAVRERIIRAFLVEGQKIVK 104
           +YKR+RL+RN R VNRAY GVLS SAVRERIIRAFLVE QKIVK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104

[Close]
BLAST of Cucsa.375250 vs. TrEMBL
Match: A9PB27_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s11780g PE=2 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.1e-34
Identity = 82/104 (78.85%), Postives = 87/104 (83.65%), Query Frame = 1 

Query: 1   MVQRLTYRKRHNYATKSNQHCVVKTPGVKHVYLTAKKSASRPN-KVIGKRIQGISHLRPA 60
           MVQRLTYRKRH+YATKSNQH VVKTPG K +Y T KK AS P   V GKRIQGI HLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  KYKRTRLARNWRIVNRAYDGVLSSSAVRERIIRAFLVEGQKIVK 104
           +YKR+RL+RN R VNRAY GVLS SAVRERIIRAFLVE QKIVK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104

[Close]
BLAST of Cucsa.375250 vs. TAIR10
Match: AT1G26880.1 (AT1G26880.1 Ribosomal protein L34e superfamily protein)

HSP 1 Score: 147.9 bits (372), Expect = 3.5e-36
Identity = 79/104 (75.96%), Postives = 85/104 (81.73%), Query Frame = 1 

Query: 1   MVQRLTYRKRHNYATKSNQHCVVKTPGVKHVYLTAKKSASRPN-KVIGKRIQGISHLRPA 60
           MVQRL YR RH+YATKSNQH +VKTPG K VY T KK AS P   V GKRIQGI HLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  KYKRTRLARNWRIVNRAYDGVLSSSAVRERIIRAFLVEGQKIVK 104
           +YKR+RL+RN R VNRAY GVLS SAVRERIIRAFLVE QKIVK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104

[Close]
BLAST of Cucsa.375250 vs. TAIR10
Match: AT1G69620.1 (AT1G69620.1 ribosomal protein L34)

HSP 1 Score: 146.0 bits (367), Expect = 1.3e-35
Identity = 78/104 (75.00%), Postives = 83/104 (79.81%), Query Frame = 1 

Query: 1   MVQRLTYRKRHNYATKSNQHCVVKTPGVKHVYLTAKKSASRPN-KVIGKRIQGISHLRPA 60
           MVQRL YR RH+YATKSNQH +VKTPG K  Y T KK AS P   V GKRIQGI HLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  KYKRTRLARNWRIVNRAYDGVLSSSAVRERIIRAFLVEGQKIVK 104
           +YKR+RL+RN R VNRAY GVLS SAVRERIIRAFLVE QKIVK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104

[Close]
BLAST of Cucsa.375250 vs. TAIR10
Match: AT3G28900.1 (AT3G28900.1 Ribosomal protein L34e superfamily protein)

HSP 1 Score: 144.1 bits (362), Expect = 5.0e-35
Identity = 77/104 (74.04%), Postives = 82/104 (78.85%), Query Frame = 1 

Query: 1   MVQRLTYRKRHNYATKSNQHCVVKTPGVKHVYLTAKKSASRPN-KVIGKRIQGISHLRPA 60
           MVQRL YR RH+YATKSNQH +VKTPG K  Y T  K AS P   V GKRIQGI HLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  KYKRTRLARNWRIVNRAYDGVLSSSAVRERIIRAFLVEGQKIVK 104
           +YKR+RLARN R VNRAY GVLS  AVRERI+RAFLVE QKIVK
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVK 104

[Close]
BLAST of Cucsa.375250 vs. NCBI nr
Match: gi|449459176|ref|XP_004147322.1| (PREDICTED: 60S ribosomal protein L34 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-34
Identity = 84/104 (80.77%), Postives = 87/104 (83.65%), Query Frame = 1 

Query: 1   MVQRLTYRKRHNYATKSNQHCVVKTPGVKHVYLTAKKSASRPN-KVIGKRIQGISHLRPA 60
           MVQRLTYRKRH+YATKSNQH VVKTPG K VY T KK AS P   V GKRIQGI HLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  KYKRTRLARNWRIVNRAYDGVLSSSAVRERIIRAFLVEGQKIVK 104
           +YKR+RLARN R VNRAY GVLS SAVRERIIRAFLVE QKIVK
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104

[Close]
BLAST of Cucsa.375250 vs. NCBI nr
Match: gi|224141383|ref|XP_002324052.1| (ribosomal protein L34 [Populus trichocarpa])

HSP 1 Score: 153.3 bits (386), Expect = 2.3e-34
Identity = 83/104 (79.81%), Postives = 87/104 (83.65%), Query Frame = 1 

Query: 1   MVQRLTYRKRHNYATKSNQHCVVKTPGVKHVYLTAKKSASRPN-KVIGKRIQGISHLRPA 60
           MVQRLTYRKRH+YATKSNQH VVKTPG K VY T KK AS P   V GKRIQGI HLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  KYKRTRLARNWRIVNRAYDGVLSSSAVRERIIRAFLVEGQKIVK 104
           +YKR+RL+RN R VNRAY GVLS SAVRERIIRAFLVE QKIVK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104

[Close]
BLAST of Cucsa.375250 vs. NCBI nr
Match: gi|743894063|ref|XP_011040278.1| (PREDICTED: 60S ribosomal protein L34-like [Populus euphratica])

HSP 1 Score: 153.3 bits (386), Expect = 2.3e-34
Identity = 83/104 (79.81%), Postives = 87/104 (83.65%), Query Frame = 1 

Query: 1   MVQRLTYRKRHNYATKSNQHCVVKTPGVKHVYLTAKKSASRPN-KVIGKRIQGISHLRPA 60
           MVQRLTYRKRH+YATKSNQH VVKTPG K VY T KK AS P   V GKRIQGI HLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  KYKRTRLARNWRIVNRAYDGVLSSSAVRERIIRAFLVEGQKIVK 104
           +YKR+RL+RN R VNRAY GVLS SAVRERIIRAFLVE QKIVK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104

[Close]
BLAST of Cucsa.375250 vs. NCBI nr
Match: gi|778655948|ref|XP_004138165.2| (PREDICTED: 60S ribosomal protein L34-like [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 2.3e-34
Identity = 83/104 (79.81%), Postives = 87/104 (83.65%), Query Frame = 1 

Query: 1   MVQRLTYRKRHNYATKSNQHCVVKTPGVKHVYLTAKKSASRPN-KVIGKRIQGISHLRPA 60
           MVQRLTYRKRH+YATKSNQH VVKTPG K VY T KK AS P   V GKRIQGI HLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  KYKRTRLARNWRIVNRAYDGVLSSSAVRERIIRAFLVEGQKIVK 104
           +YKR+RLARN R VNRAY GV+S SAVRERIIRAFLVE QKIVK
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVVSGSAVRERIIRAFLVEEQKIVK 104

[Close]
BLAST of Cucsa.375250 vs. NCBI nr
Match: gi|224122214|ref|XP_002318779.1| (ribosomal protein L34 [Populus trichocarpa])

HSP 1 Score: 153.3 bits (386), Expect = 2.3e-34
Identity = 83/104 (79.81%), Postives = 87/104 (83.65%), Query Frame = 1 

Query: 1   MVQRLTYRKRHNYATKSNQHCVVKTPGVKHVYLTAKKSASRPN-KVIGKRIQGISHLRPA 60
           MVQRLTYRKRH+YATKSNQH VVKTPG K VY T KK AS P   V GKRIQGI HLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  KYKRTRLARNWRIVNRAYDGVLSSSAVRERIIRAFLVEGQKIVK 104
           +YKR+RL+RN R VNRAY GVLS SAVRERIIRAFLVE QKIVK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104

The following BLAST results are available for this feature:
BLAST of Cucsa.375250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL34_TOBAC1.6e-3576.9260S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1[more]
RL34_PEA2.8e-3576.9260S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1[more]
RL341_ARATH6.1e-3575.9660S ribosomal protein L34-1 OS=Arabidopsis thaliana GN=RPL34A PE=2 SV=1[more]
RL342_ARATH2.3e-3475.0060S ribosomal protein L34-2 OS=Arabidopsis thaliana GN=RPL34B PE=3 SV=1[more]
RL343_ARATH8.9e-3474.0460S ribosomal protein L34-3 OS=Arabidopsis thaliana GN=RPL34C PE=2 SV=1[more]
BLAST of Cucsa.375250 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LK03_CUCSA7.3e-3580.77Uncharacterized protein OS=Cucumis sativus GN=Csa_2G338890 PE=4 SV=1[more]
A9P8R1_POPTR1.6e-3479.81Ribosomal protein L34 OS=Populus trichocarpa GN=POPTR_0012s11020g PE=2 SV=1[more]
A0A0A0LP37_CUCSA1.6e-3479.81Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009690 PE=4 SV=1[more]
A9PDF8_POPTR1.6e-3479.81Ribosomal protein L34 OS=Populus trichocarpa GN=POPTR_0017s11850g PE=2 SV=1[more]
A9PB27_POPTR2.1e-3478.85Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s11780g PE=2 SV=1[more]
BLAST of Cucsa.375250 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G26880.13.5e-3675.96 Ribosomal protein L34e superfamily protein[more]
AT1G69620.11.3e-3575.00 ribosomal protein L34[more]
AT3G28900.15.0e-3574.04 Ribosomal protein L34e superfamily protein[more]
BLAST of Cucsa.375250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449459176|ref|XP_004147322.1|1.0e-3480.77PREDICTED: 60S ribosomal protein L34 [Cucumis sativus][more]
gi|224141383|ref|XP_002324052.1|2.3e-3479.81ribosomal protein L34 [Populus trichocarpa][more]
gi|743894063|ref|XP_011040278.1|2.3e-3479.81PREDICTED: 60S ribosomal protein L34-like [Populus euphratica][more]
gi|778655948|ref|XP_004138165.2|2.3e-3479.81PREDICTED: 60S ribosomal protein L34-like [Cucumis sativus][more]
gi|224122214|ref|XP_002318779.1|2.3e-3479.81ribosomal protein L34 [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008195Ribosomal_L34Ae
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.375250.1Cucsa.375250.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008195Ribosomal protein L34AePRINTSPR01250RIBOSOMALL34coord: 26..43
score: 3.0E-15coord: 13..26
score: 3.0E-15coord: 65..87
score: 3.0
IPR008195Ribosomal protein L34AePANTHERPTHR1075960S RIBOSOMAL PROTEIN L34coord: 1..103
score: 3.5
IPR008195Ribosomal protein L34AePFAMPF01199Ribosomal_L34ecoord: 1..95
score: 1.4
NoneNo IPR availablePANTHERPTHR10759:SF13SUBFAMILY NOT NAMEDcoord: 1..103
score: 3.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.375250Csa3G305650Cucumber (Chinese Long) v2cgycuB525
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.375250Cucurbita maxima (Rimu)cgycmaB1034
Cucsa.375250Cucurbita maxima (Rimu)cgycmaB1035
Cucsa.375250Cucurbita moschata (Rifu)cgycmoB1033
Cucsa.375250Cucurbita moschata (Rifu)cgycmoB1034
Cucsa.375250Wild cucumber (PI 183967)cgycpiB554
Cucsa.375250Melon (DHL92) v3.5.1cgymeB609
Cucsa.375250Watermelon (Charleston Gray)cgywcgB640
Cucsa.375250Watermelon (97103) v1cgywmB677
Cucsa.375250Cucurbita pepo (Zucchini)cgycpeB0989
Cucsa.375250Cucurbita pepo (Zucchini)cgycpeB0990
Cucsa.375250Bottle gourd (USVL1VR-Ls)cgylsiB607
Cucsa.375250Melon (DHL92) v3.6.1cgymedB606
Cucsa.375250Silver-seed gourdcarcgyB0586
Cucsa.375250Cucumber (Chinese Long) v3cgycucB569
Cucsa.375250Watermelon (97103) v2cgywmbB644
Cucsa.375250Wax gourdcgywgoB750