Cucsa.375200 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.375200
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Tetratricopeptide repeat 5
Location	scaffold03746 : 79093 .. 79725 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAGATTTTTACTCAATACTTGTTCTATTTCCTTGTTTCTAAATATGTTCAGTCAAAACCTAGAAATCACCATGATTTTTCTAGTAATAAAAGGGAGATTCTCAAAACAAAGTTAGAAAAAACAACATTTTCCATGGAAACAAAAGAAGAACGGCTATAATCAGTGTATAAATAAAATAAAATATGCATATGCAAGTAACGTCAACACAAAAGTGAGTCGTTTAGAAATGCCATGAAATTGCAAAAAGGGACTAAAACTATACATACAAGGACAACCAGTAAATAAAACCACAAGGATTATGTTTAAAAGTCATAATACACATCTTCCAAACATAACATGAACTTGTTAAAAAAAaTGAAATAAATAAACATTCAACTCTAATTTTACCTCGAGCCCATCTTCATAATAGAATTCGAAGTAGGAGGCTATGAATCTTCAATTTTTCTCCAACAACAATTGAACACACAAATGATTTGTACATAACATAAACGCAAATAATAATATAACACATCTGCACTATTTTGTTTTTCAGATAATCTAGGAAATGCATGCCTTACAACTTTTTTtGTTATCCAAGCGTGGGATTATAGTAAGCTTTTGCAATCTTTGAAGGCATATCAGAATGCG

mRNA sequence

ATGAAAGAGATTTTTACTCAATACTTGTTCTATTTCCTTGTTTCTAAATATGTTCAGTCAAAACCTAGAAATCACCATGATTTTTCTAATAATCTAGGAAATGCATGCCTTACAACTTTTTTTGTTATCCAAGCGTGGGATTATAGTAAGCTTTTGCAATCTTTGAAGGCATATCAGAATGCG

Coding sequence (CDS)

ATGAAAGAGATTTTTACTCAATACTTGTTCTATTTCCTTGTTTCTAAATATGTTCAGTCAAAACCTAGAAATCACCATGATTTTTCTAATAATCTAGGAAATGCATGCCTTACAACTTTTTTtGTTATCCAAGCGTGGGATTATAGTAAGCTTTTGCAATCTTTGAAGGCATATCAGAATGCG

Protein sequence

MKEIFTQYLFYFLVSKYVQSKPRNHHDFSNNLGNACLTTFFVIQAWDYSKLLQSLKAYQNA

Homology

[Close]

BLAST of Cucsa.375200 vs. TrEMBL
Match: A0A0A0KUM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611630 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-06
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 1


Query: 31  NLGNACLTTFFVIQAWDYSKLLQSLKAYQNA 62
           NLGNACLT+FFV  AWD+SKLLQSLKAYQNA
Sbjct: 180 NLGNACLTSFFVTGAWDHSKLLQSLKAYQNA 210

[Close]

BLAST of Cucsa.375200 vs. TrEMBL
Match: B9HW98_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12640g PE=4 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-06
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 1


Query: 31  NLGNACLTTFFVIQAWDYSKLLQSLKAYQNA 62
           NLGNACLT+FFV  AWD+SKLLQSLKAYQNA
Sbjct: 199 NLGNACLTSFFVTGAWDHSKLLQSLKAYQNA 229

[Close]

BLAST of Cucsa.375200 vs. TrEMBL
Match: F6HFK6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g04530 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-06
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 1


Query: 31  NLGNACLTTFFVIQAWDYSKLLQSLKAYQNA 62
           NLGNACLT+FFV  AWD+SKLLQSLKAYQNA
Sbjct: 175 NLGNACLTSFFVTGAWDHSKLLQSLKAYQNA 205

[Close]

BLAST of Cucsa.375200 vs. TrEMBL
Match: A0A068TWY1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032779001 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-06
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 1


Query: 31 NLGNACLTTFFVIQAWDYSKLLQSLKAYQNA 62
          NLGNACLT+FFV  AWD+SKLLQSLKAYQNA
Sbjct: 39 NLGNACLTSFFVTGAWDHSKLLQSLKAYQNA 69

[Close]

BLAST of Cucsa.375200 vs. TrEMBL
Match: A0A166EE22_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007277 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.2e-06
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 1


Query: 31  NLGNACLTTFFVIQAWDYSKLLQSLKAYQNA 62
           NLGNACLT FFV  AWD+SKLLQSLKAYQNA
Sbjct: 172 NLGNACLTCFFVTGAWDHSKLLQSLKAYQNA 202

[Close]

BLAST of Cucsa.375200 vs. NCBI nr
Match: gi|659091696|ref|XP_008446683.1| (PREDICTED: tetratricopeptide repeat protein 5-like isoform X2 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-06
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 1


Query: 31  NLGNACLTTFFVIQAWDYSKLLQSLKAYQNA 62
           NLGNACLT+FFV  AWD+SKLLQSLKAYQNA
Sbjct: 180 NLGNACLTSFFVTGAWDHSKLLQSLKAYQNA 210

[Close]

BLAST of Cucsa.375200 vs. NCBI nr
Match: gi|359472891|ref|XP_002280284.2| (PREDICTED: tetratricopeptide repeat protein 5 isoform X1 [Vitis vinifera])

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-06
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 1


Query: 31  NLGNACLTTFFVIQAWDYSKLLQSLKAYQNA 62
           NLGNACLT+FFV  AWD+SKLLQSLKAYQNA
Sbjct: 183 NLGNACLTSFFVTGAWDHSKLLQSLKAYQNA 213

[Close]

BLAST of Cucsa.375200 vs. NCBI nr
Match: gi|449434562|ref|XP_004135065.1| (PREDICTED: tetratricopeptide repeat protein 5 isoform X2 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-06
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 1


Query: 31  NLGNACLTTFFVIQAWDYSKLLQSLKAYQNA 62
           NLGNACLT+FFV  AWD+SKLLQSLKAYQNA
Sbjct: 180 NLGNACLTSFFVTGAWDHSKLLQSLKAYQNA 210

[Close]

BLAST of Cucsa.375200 vs. NCBI nr
Match: gi|659091698|ref|XP_008446684.1| (PREDICTED: tetratricopeptide repeat protein 5-like isoform X3 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-06
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 1


Query: 31  NLGNACLTTFFVIQAWDYSKLLQSLKAYQNA 62
           NLGNACLT+FFV  AWD+SKLLQSLKAYQNA
Sbjct: 180 NLGNACLTSFFVTGAWDHSKLLQSLKAYQNA 210

[Close]

BLAST of Cucsa.375200 vs. NCBI nr
Match: gi|359472893|ref|XP_003631209.1| (PREDICTED: tetratricopeptide repeat protein 5 isoform X2 [Vitis vinifera])

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-06
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 1


Query: 31  NLGNACLTTFFVIQAWDYSKLLQSLKAYQNA 62
           NLGNACLT+FFV  AWD+SKLLQSLKAYQNA
Sbjct: 183 NLGNACLTSFFVTGAWDHSKLLQSLKAYQNA 213

The following BLAST results are available for this feature:

BLAST of Cucsa.375200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUM0_CUCSA	1.9e-06	87.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611630 PE=4 SV=1	[more]
B9HW98_POPTR	1.9e-06	87.10	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12640g PE=4 SV=2	[more]
F6HFK6_VITVI	1.9e-06	87.10	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g04530 PE=4 SV=...	[more]
A0A068TWY1_COFCA	1.9e-06	87.10	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032779001 PE=4 SV=1	[more]
A0A166EE22_DAUCA	3.2e-06	87.10	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007277 PE=4 SV=1	[more]

BLAST of Cucsa.375200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091696\|ref\|XP_008446683.1\|	2.7e-06	87.10	PREDICTED: tetratricopeptide repeat protein 5-like isoform X2 [Cucumis melo]	[more]
gi\|359472891\|ref\|XP_002280284.2\|	2.7e-06	87.10	PREDICTED: tetratricopeptide repeat protein 5 isoform X1 [Vitis vinifera]	[more]
gi\|449434562\|ref\|XP_004135065.1\|	2.7e-06	87.10	PREDICTED: tetratricopeptide repeat protein 5 isoform X2 [Cucumis sativus]	[more]
gi\|659091698\|ref\|XP_008446684.1\|	2.7e-06	87.10	PREDICTED: tetratricopeptide repeat protein 5-like isoform X3 [Cucumis melo]	[more]
gi\|359472893\|ref\|XP_003631209.1\|	2.7e-06	87.10	PREDICTED: tetratricopeptide repeat protein 5 isoform X2 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.375200.1	Cucsa.375200.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.375200	Watermelon (97103) v2	cgywmbB644
Cucsa.375200	Wax gourd	cgywgoB750
Cucsa.375200	Cucurbita maxima (Rimu)	cgycmaB1034
Cucsa.375200	Cucurbita maxima (Rimu)	cgycmaB1035
Cucsa.375200	Cucurbita moschata (Rifu)	cgycmoB1033
Cucsa.375200	Cucurbita moschata (Rifu)	cgycmoB1034
Cucsa.375200	Wild cucumber (PI 183967)	cgycpiB554
Cucsa.375200	Cucumber (Chinese Long) v2	cgycuB525
Cucsa.375200	Melon (DHL92) v3.5.1	cgymeB609
Cucsa.375200	Watermelon (Charleston Gray)	cgywcgB640
Cucsa.375200	Watermelon (97103) v1	cgywmB677
Cucsa.375200	Cucurbita pepo (Zucchini)	cgycpeB0990
Cucsa.375200	Bottle gourd (USVL1VR-Ls)	cgylsiB607
Cucsa.375200	Melon (DHL92) v3.6.1	cgymedB606
Cucsa.375200	Silver-seed gourd	carcgyB0586
Cucsa.375200	Cucumber (Chinese Long) v3	cgycucB569