Cucsa.365900 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.365900
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationscaffold03611 : 3783371 .. 3785158 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACTCCGTGGTCGTCCCCCAGGAGGTAAGAAACGGTCCTCCAACAAGAAACATAACTTAGGATATGCCCACGTTAGTGAGACTACCACTGCCAACACTTCTCAATCAACTGACCTTACTACAAGCCAGACCAAGACTCCTACTTTGGGTGTCATTGCTCAGTTAGGTATGCTTCAGTCCCTTGGGCTTATTAGCGTTGATGGGAAGAATTCCTTGAATCTAGACTCGGGGGCTACAGATCACTGGACAAGTTTTTTGGAGCACTTTATCTTTTATGCCCCATGTGTCAGTAATGAAAAAGTTCAAGTAGTCAATGACCCTCTAGCCCCAATTACTAGCAAAGGACAAATAGCTCCCTTTTATGATTTTGCTCTCCATAATGTTTTGCATGTGCCTAAATTGTCTTACAATTTGCTATCTATAAGCAAGATCACTCGTGAGCTGCATTGTAAAGTTATCTTCTTACCTGAATCTGTCTGTTTTCAGGACATGAGCTCGAGGAGGACGATTGTGATTGCCCAGCATAGCGGAGGACTTTACATTCTTGATGATGATACCTTCGGTAGTAGTTTCTCTAGGGCTAGTTTACTGCCTTGCTTTAGCACTTCTAAACATGATTGTATGTTGTGGCATTTTCGGTTGAGCCACCCAAACTTTAGGTATATGCAATATTTGTTTCTCCATCCTTTTTCTAAACGTGATGTCTCCTCTCTATCTCGTGATGTGTGTATTCGGGTTAAACAACATTGGGTTTCATTTTCCTTACAACCATATAAACATATACAACTGTTTACCCTTATCCATAATAACGTTTGAGGTCCTTCCAAGGTCACCACCTCATTTGGGAAACGGTGGTTTGTAACTTTCATTGATGATCATACTCGTTTTATGATAGAACACTAATATAGTGTTTCTATTTTATTGATATCTCAAACACAAATTACAATATGAAAGACTAGTGATCCTCATGAGATGAATCACGTTAACCAAAAGTCACATTCAACAAACAATTACCTCTCCTAAACAGAAAACTTAAGAACAAAGCAATACAAAATCACAAAATGAACTTAGAACAAAAGAACCTTGCCCTCTGCTTTTCCTCTTTCTCAAGGAGTAATCCAATCATATTCCTTCACCATAATCTTCATGCCTTTCTTCCCTCCCCAACTTCCTATTTATAACCATCTAACTGCCAACAAATCTAATTACCCTTATACCTCTGCCCTATACTAATCTAGGTATCTAACATCTTACTTAGGTCTATTACCGATAAATCCGAGGTTTCATCTATTTTCCAAAACTTCTACCACACCATTGAAACACAATTCCATACAAAAATTGCAATTATTGGAAGTGATAATTTATGGTCTGGAATTTCAAAACCATAACCTTAGTGAATTCTTAGCCTCCAAGTCCCTTATGCTATCTACTTCCCTTCCTTCGTACCTGTAAGGAGATGTTATTCTTACAGCAGCCTATTTAATCAATAGAATGTCTTCTCGTATCCTCCACCTTCATACTCCCTTAGATTGTCTTAAGCAGTCGCTGCAGTCCTACCCTTCTACTCTTCTAATTTCTGAGGTTTCCCTCCTTGTGTTTAGGTGTACCACTTGTGTCCATAATTTTGGCCCTAATCAACCATGTGTGTTCGTTGGGTATCCCCTTCATCAATGCAGTTATAAATGTTTTCATCCGTCGTGTAGGAAATACTTCGATACTATGGATGTTACCTTCTGTGAGGACAAACCCTACTTTCTTGTTAGCCATCTTCAAGGGGAGAGTGAGTGA

mRNA sequence

aaactccgtggtcgtcccccaggaggtaagaaacggtcctccaacaagaaacataacTTAGGATATGCCCACGTTAGTGAGACTACCACTGCCAACACTTCTCAATCAACTGACCTTACTACAAGCCAGACCAAGACTCctactttgggtgtcattgctcagttaggtatgcttcagtcccttgggcttattagcgttgatgggaagaattccttgaatctagactcgggggctacagatcactggacaagttttttggagcactttatcttttatgccccatgtgtcagtaatgaaaaagttcaagtagtcaatgaccctctagccccaattactagcaaaggacaaatagctcccttttatgattttgctctccataatgttttgcatgtgcctaaattgtcttacaatttgctatctataagcaagatcactcgtgagctgcattgtaaagttatcttcttacctgaatctgtctgttttcaggacatgagctcgaggaggacgattgtgattgcccagcatagcggaggactttacattcttgatgatgataccttcggtagtagtttctctagggctagtttactgccttgctttagcacttctaaacatgattgtatgttgtggcattttcggttgagccacccaaactttaggtatatgcaatatttgtttctccatcctttttctaaacgtgatgtctcctctctatctcgtgatgtgtgtattcgggttaaacaacattgggtttcattttccttacaaccatataaacatatacaactgtttacccttatccataataacgtatctaAcatcttacttaggtctattaccgataaatccgaggtttcatctattttccaaaacttctaccacaccattgaaacacaattccatacaaaaattgcaattattggaagagatgttattcttacagcagcctatttaatcaatagaatgtcttctcgtatcctccaccttcatactcccttagattgtcttaagcagtcgctgcagtcctacccttctactcttctaatttctgaggtttccctccttgtgtttaggtgtaccacttgtgtccataattttggccctaatcaaccatgtgtgttcgttgggtatccccttcatcaatgcagttataaatgttttcatccgtcgtgtaggaaatacttcgatactatggatgttaccttctgtgaggacaaaccctactttcttgttagccatcttcaaggggagagtgagtga

Coding sequence (CDS)

AAACTCCGTGGTCGTCCCCCAGGAGGTAAGAAACGGTCCTCCAACAAGAAACATAACTTAGGATATGCCCACGTTAGTGAGACTACCACTGCCAACACTTCTCAATCAACTGACCTTACTACAAGCCAGACCAAGACTCCTACTTTGGGTGTCATTGCTCAGTTAGGTATGCTTCAGTCCCTTGGGCTTATTAGCGTTGATGGGAAGAATTCCTTGAATCTAGACTCGGGGGCTACAGATCACTGGACAAGTTTTTTGGAGCACTTTATCTTTTATGCCCCATGTGTCAGTAATGAAAAAGTTCAAGTAGTCAATGACCCTCTAGCCCCAATTACTAGCAAAGGACAAATAGCTCCCTTTTATGATTTTGCTCTCCATAATGTTTTGCATGTGCCTAAATTGTCTTACAATTTGCTATCTATAAGCAAGATCACTCGTGAGCTGCATTGTAAAGTTATCTTCTTACCTGAATCTGTCTGTTTTCAGGACATGAGCTCGAGGAGGACGATTGTGATTGCCCAGCATAGCGGAGGACTTTACATTCTTGATGATGATACCTTCGGTAGTAGTTTCTCTAGGGCTAGTTTACTGCCTTGCTTTAGCACTTCTAAACATGATTGTATGTTGTGGCATTTTCGGTTGAGCCACCCAAACTTTAGGTATATGCAATATTTGTTTCTCCATCCTTTTTCTAAACGTGATGTCTCCTCTCTATCTCGTGATGTGTGTATTCGGGTTAAACAACATTGGGTTTCATTTTCCTTACAACCATATAAACATATACAACTGTTTACCCTTATCCATAATAACGTATCTAACATCTTACTTAGGTCTATTACCGATAAATCCGAGGTTTCATCTATTTTCCAAAACTTCTACCACACCATTGAAACACAATTCCATACAAAAATTGCAATTATTGGAAGAGATGTTATTCTTACAGCAGCCTATTTAATCAATAGAATGTCTTCTCGTATCCTCCACCTTCATACTCCCTTAGATTGTCTTAAGCAGTCGCTGCAGTCCTACCCTTCTACTCTTCTAATTTCTGAGGTTTCCCTCCTTGTGTTTAGGTGTACCACTTGTGTCCATAATTTTGGCCCTAATCAACCATGTGTGTTCGTTGGGTATCCCCTTCATCAATGCAGTTATAAATGTTTTCATCCGTCGTGTAGGAAATACTTCGATACTATGGATGTTACCTTCTGTGAGGACAAACCCTACTTTCTTGTTAGCCATCTTCAAGGGGAGAGTGAGTGA

Protein sequence

KLRGRPPGGKKRSSNKKHNLGYAHVSETTTANTSQSTDLTTSQTKTPTLGVIAQLGMLQSLGLISVDGKNSLNLDSGATDHWTSFLEHFIFYAPCVSNEKVQVVNDPLAPITSKGQIAPFYDFALHNVLHVPKLSYNLLSISKITRELHCKVIFLPESVCFQDMSSRRTIVIAQHSGGLYILDDDTFGSSFSRASLLPCFSTSKHDCMLWHFRLSHPNFRYMQYLFLHPFSKRDVSSLSRDVCIRVKQHWVSFSLQPYKHIQLFTLIHNNVSNILLRSITDKSEVSSIFQNFYHTIETQFHTKIAIIGRDVILTAAYLINRMSSRILHLHTPLDCLKQSLQSYPSTLLISEVSLLVFRCTTCVHNFGPNQPCVFVGYPLHQCSYKCFHPSCRKYFDTMDVTFCEDKPYFLVSHLQGESE*
Homology
[Close]
BLAST of Cucsa.365900 vs. TrEMBL
Match: A5ALJ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034932 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 4.0e-47
Identity = 137/405 (33.83%), Postives = 200/405 (49.38%), Query Frame = 1 

Query: 50  GVIAQLGMLQSLGLISVDGKNSLNLDSGATDHWTSFLEHFIFYAPCVSNEKVQVVNDPLA 109
           G +A  G   S    S   K    +DSGA+DH T     F  Y+ C +N  V++ +  L+
Sbjct: 273 GTLAHKGNFLSAFTASKKRKKPWIVDSGASDHMTGNATIFYTYSSCPNNLTVRIADGSLS 332

Query: 110 PITSKGQIAPFYDFALHNVLHVPKLSYNLLSISKITRELHCKVIFLPESVCFQDMSSRRT 169
            +     +    D  L++VL VP L  NLLSISK+T+E  C   F      FQD+ S +T
Sbjct: 333 KVAGTSSVVLSRDLTLNSVLLVPHLDCNLLSISKLTKEKRCITNFSSTHCEFQDLDSGKT 392

Query: 170 IVIAQHSGGLYIL---DDDTFGSSFSRASLLPCFSTSKHD--CMLWHFRLSHPNFRYMQY 229
           I  A+   GLYIL    D       +  S     S   +D   MLWH+RL HPN +Y+++
Sbjct: 393 IGNAEECSGLYILKERHDPQEQPQMAVGSNSFSVSCQNNDSAIMLWHYRLGHPNVKYLKH 452

Query: 230 LFLHPFSKRDVSSLSRDVCIRVKQHWVSFSLQPYKHIQLFTLIHNNV------------- 289
           LF   F+K +  S   ++C   KQ    F +QPYK    F++IH+++             
Sbjct: 453 LFPSLFNK-NPKSFECEICQLSKQVRSQFPIQPYKESSPFSMIHSDIWGPSRIKNVTGEF 512

Query: 290 ----SNILLRSITDKSEVSSIFQ-NFYHTIET----QFHTKI-AIIGRDVILTAAYLINR 349
                 + L S  D  + + I +    H +E      F   +  ++    +LTAAYLINR
Sbjct: 513 LAQEGIVHLSSCVDTPQQNGIAERKNRHLLEVARSLMFSMNVPKLLWGQAVLTAAYLINR 572

Query: 350 MSSRILHLHTPLDCLKQSLQSYPSTLLISEVSLLVFRCTTCVH-------NFGPNQ-PCV 409
           M SR+L   TP   L   L+S+P+T LIS V   +F C+  VH          P    C+
Sbjct: 573 MPSRVLKFQTPCQTL---LKSFPTTRLISTVPPKIFGCSVFVHINQQHRSKLDPRSLKCI 632

Query: 410 FVGYPLHQCSYKCFHPSCRKYFDTMDVTFCEDKPYFLVSHLQGES 419
           F+GY  +Q  YKC+ P  RK++++MDVTF E +PY+  + +QGE+
Sbjct: 633 FLGYSSNQKGYKCYSPVTRKFYNSMDVTFFETQPYYPKNDIQGEN 673

[Close]
BLAST of Cucsa.365900 vs. TrEMBL
Match: A5BS42_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002211 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.8e-42
Identity = 134/447 (29.98%), Postives = 212/447 (47.43%), Query Frame = 1 

Query: 1   KLRGRPPGGKKRSSNKKHNLGYAHVSETTTANTSQSTDLTTSQTKTPTLGVIAQLGMLQS 60
           KL  +P   K +  + +   G AHV+  + +           +       +++Q+G   +
Sbjct: 530 KLHDKPXDWKPKPRSDRD--GRAHVAANSESTXVPEPSPFNKEQMEMLQKLLSQVGSGST 589

Query: 61  LGLISVDGKNSLN---LDSGATDHWTSFLEHFIFYAPCVSNEKVQVVNDPLAPITSKGQI 120
            G+     +  +    +D+GA+DH T        Y P   +  V + +   + I   G I
Sbjct: 590 TGIALTASRGGMKPWIVDTGASDHMTGDAAILQNYKPSNGHSSVHIADGSKSKIAGTGSI 649

Query: 121 APFYDFALHNVLHVPKLSYNLLSISKITRELHCKVIFLPESVCFQDMSSRRTIVIAQHSG 180
               D  L +VLHVP L  NLLSISK+ R+L C   F P S  FQD+ S + I  A+   
Sbjct: 650 KLTKDLYLDSVLHVPNLDCNLLSISKLARDLQCVTKFYPNSCVFQDLKSGKMIGSAELCS 709

Query: 181 GLYILDDDTFGSSFSRA------SLLPCF---STSK----HDCMLWHFRLSHPNFRYMQY 240
           GLY+L    F +  S+A      S+L  F   S SK     + ++ H+RL HP+F Y+  
Sbjct: 710 GLYLLSCGQFSNQVSQASCVQSQSMLESFNXVSNSKVNKDSEIIMLHYRLGHPSFVYLXK 769

Query: 241 LFLHPFSKRDVSSLSRDVCIRVKQHWVSFSLQPYKHIQLFTLIHNNVSNILLRSITDKSE 300
           LF   F  ++ +S   ++C   K     +   PYK   +F+L+H++V             
Sbjct: 770 LFPKLFINKNPASYHCEICQFAKHTRTVYPQIPYKPSTVFSLVHSDVWG----------- 829

Query: 301 VSSIFQNFYHTIETQ---FHTKIA-IIGRDVILTAAYLINRMSSRILHLHTPLDCLKQSL 360
            S I + F+H++  +   F + +      + ILTA YLINRM SR+L   +P       L
Sbjct: 830 PSRIKKYFWHSMVARCLMFSSNVPNYFWGEAILTATYLINRMPSRVLTFQSPRQLF---L 889

Query: 361 QSYPSTLLI-SEVSLLVFRCTTCVHNFGPNQ--------PCVFVGYPLHQCSYKCFHPSC 419
           + +P T    S++ L VF CT  VH +  N+         C+F+GY   Q  YKC+ P+ 
Sbjct: 890 KQFPHTXAASSDLPLKVFGCTXFVHVYPQNRSKFAPRANKCIFLGYSPTQKGYKCYSPTN 949

[Close]
BLAST of Cucsa.365900 vs. TrEMBL
Match: A5C7R1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024166 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 8.6e-42
Identity = 132/382 (34.55%), Postives = 186/382 (48.69%), Query Frame = 1 

Query: 74  LDSGATDHWTSFLEHFIFYAPCVSNEKVQVVNDPLAPITSKGQIAPFYDFALHNVLHVPK 133
           +DS ATDH T   + F  Y    SN+K+ V N  L  +   G I       L NVLHVPK
Sbjct: 298 IDSDATDHMTFKSQLFNTYTLSPSNKKIVVANGSLVTVAGFGDIYITPTLILKNVLHVPK 357

Query: 134 LSYNLLSISKITRELHCKVIFLPESVCFQDMSSRRTIVIAQHSGGLYILDDDTFGSSFSR 193
           LS NL+SI K+T +L C  IF P     Q+  S R I +A+   GLY L+     S+   
Sbjct: 358 LSANLVSIQKLTHDLKCYAIFFPSYCVLQEQGSGRRIGLAKEMSGLYHLESSQKTSNNLS 417

Query: 194 ASLLPCFSTSKHDCMLWHFRLSHPNFRYMQYLFLHPFSKRDVSSLSRDVCIRVKQHWVSF 253
            SLL   S++K    L+H RL HP+FR ++ +F H F   D+S    + C   K   V F
Sbjct: 418 LSLLS--SSNKDTIWLYHLRLGHPSFRVLKVMFPHLFQGLDISEFHCETCELAKHTRVYF 477

Query: 254 SLQPYKHIQLFTLIHN---------NVSN-----ILLRSIT-----DKSEVSSIFQNFY- 313
            +   +    F LIH+         NVS       L+   T     D S +++  QN   
Sbjct: 478 PISNKRSSHPFHLIHSDIWGPSTIPNVSGARWFVFLIDDCTRGILHDSSCINTPQQNGVA 537

Query: 314 -----HTIET------QFHTKIAIIGRDVILTAAYLINRMSSRILHLHTPLDCLKQSLQS 373
                H + T      Q +   +  G + +LTA Y+INR+ SR+L   +P++ LK     
Sbjct: 538 ERKNGHLLNTTRALLFQGNVPKSYWG-EAVLTATYMINRIPSRVLDNKSPVEILKSF--- 597

Query: 374 YPSTLLISEVSLLVFRCTTCVHNFGPNQP--------CVFVGYPLHQCSYKCFHPSCRKY 417
           YP     + ++  VF CT  VH    ++         CVF+GY   +  YKC++PS RK+
Sbjct: 598 YPHFRTSNGITPRVFGCTAFVHVHSQHRDKLDPRVIKCVFLGYSSTKKGYKCYNPSARKF 657

[Close]
BLAST of Cucsa.365900 vs. TrEMBL
Match: A5C7R1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024166 PE=4 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 4.3e-01
Identity = 25/57 (43.86%), Postives = 30/57 (52.63%), Query Frame = 1 

Query: 74  LDSGATDHWTSFLEHFIFYAPCVSNEKVQVVNDPLAPITSKGQIAPFYDFALHNVLH 131
           +DS ATDH TS  + F  Y P  SN+K+ V N  LA +     I     F L NVLH
Sbjct: 45  IDSSATDHMTSKSQLFHTYTPSPSNKKIAVANGSLATVAGFRDIYITPTFILKNVLH 101


HSP 2 Score: 33.9 bits (76), Expect = 5.8e+02
Identity = 14/29 (48.28%), Postives = 22/29 (75.86%), Query Frame = 1 

Query: 309 RDVILTAAYLINRMSSRILHLHTPLDCLK 338
           R+ +LTA Y+INR+ SR+L   +P++ LK
Sbjct: 171 RETVLTATYMINRILSRVLDNKSPVEILK 199


HSP 3 Score: 179.1 bits (453), Expect = 1.1e-41
Identity = 124/367 (33.79%), Postives = 180/367 (49.05%), Query Frame = 1 

Query: 74  LDSGATDHWTSFLEHFIFYAPCVSNEKVQVVNDPLAPITSKGQIAPFYDFALHNVLHVPK 133
           +D+GA+DH T        Y P   +  V + +   + I   G I    D  L  V HVP 
Sbjct: 446 VDTGASDHMTGDAAILQNYKPSNGHSSVHIADGSKSKIAGTGSIKLSKDLYLDFVFHVPN 505

Query: 134 LSYNLLSISKITRELHCKVIFLPESVCFQDMSSRRTIVIAQHSGGLYILDDDTFGSSFSR 193
           L  NLLSISK+ R+L C   F P S  FQD+ S + I  A+   GLY+L    F +  S+
Sbjct: 506 LDCNLLSISKLARDLQCVTKFYPNSCVFQDLKSGKMIGSAEPCSGLYLLTCGQFSNQVSQ 565

Query: 194 A------SLLPCF---STSK----HDCMLWHFRLSHPNFRYMQYLFLHPFSKRDVSSLSR 253
           A      S+L  F   S SK     + +  H+RL HP+F Y+  LF   F  ++ +S   
Sbjct: 566 ASCVQSQSMLESFNSVSNSKVNKDSEIITLHYRLGHPSFVYLAKLFPKLFINKNPASYHX 625

Query: 254 DVCIRVKQHWVSFSLQPYKHIQLFTLIHNNVSNILLRSITDKSEVSSIFQNFYHTIETQF 313
           ++C   K     +   PYK    F+L+H++V           S + +I    +       
Sbjct: 626 EICQFAKHTXTVYPQIPYKPSTXFSLVHSDV--------WGXSRIKNISGTRWFVTFVDD 685

Query: 314 HTKIAIIGRDVILTAAYLINRMSSRILHLHTPLDCLKQSLQSYPST-LLISEVSLLVFRC 373
           HT+      + ILTA YLINRM SR+L   +P   L   L+ +P T    S++ L VF C
Sbjct: 686 HTR-----GEAILTATYLINRMPSRVLTFQSPRQLL---LKKFPHTHAASSDLPLKVFDC 745

Query: 374 TTCVHNFGPNQ--------PCVFVGYPLHQCSYKCFHPSCRKYFDTMDVTFCEDKPYFLV 419
           TT VH +  N+         C+F+GY   +  YKC+ P+ +K++ TMDV+F E   ++  
Sbjct: 746 TTFVHVYPQNRSKFAPQANKCIFLGYSPTKKGYKCYSPTNKKFYTTMDVSFFEHVFFYPK 796

[Close]
BLAST of Cucsa.365900 vs. TrEMBL
Match: A5C6A5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042891 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.4e-38
Identity = 119/358 (33.24%), Postives = 173/358 (48.32%), Query Frame = 1 

Query: 2   LRGRPPGGKKRSSNKKHNL-----GYAHVSETTTANTSQSTDLTTSQ------------- 61
           L G+P   K R  NK H+        A  + T    ++ S    ++Q             
Sbjct: 323 LHGKPADWKPRQPNKAHSHQASTEAQADKTPTEVCQSTSSVGFNSNQIAKLYELFSNFQA 382

Query: 62  ----TKTPTLGVIAQLGMLQSLGLISVDGKNSLNLDSGATDHWTSFLEHFIFYAPCVSNE 121
               + T + G +A+ G   +  L ++       +DSGA+DH T     F  Y+PC  N 
Sbjct: 383 SGQSSTTLSSGSLAKKGTFLT-ALSTMSQTIPWIVDSGASDHMTDAHHLFSTYSPCAGNL 442

Query: 122 KVQVVNDPLAPITSKGQIAPFYDFALHNVLHVPKLSYNLLSISKITRELHCKVIFLPESV 181
           KV++ +  L+P+  KG I       L+ VLHVP LS NLLSIS++T++ +C   FL    
Sbjct: 443 KVKIADGTLSPVAGKGSIRISESITLNPVLHVPNLSCNLLSISQLTKKSNCSAKFLSSHC 502

Query: 182 CFQDMSSRRTIVIAQHSGGLYILDD-DTFGSSFSRASLLPCFSTS---KHDCMLWHFRLS 241
            FQD+SS +TI  A+   GLY  D+ D  G S    S   C STS     + +LWH R+ 
Sbjct: 503 VFQDLSSGKTIGSAKEREGLYYFDETDVLGQS----SPTVCNSTSYSKDSELLLWHKRMG 562

Query: 242 HPNFRYMQYLFLHPFSKRDVSSLSRDVCIRVKQHWVSFSLQPYKHIQLFTLIHNNV---S 301
           HP+F+Y+++LF    S + +     +VC   K H  SF    YK    FTLIH+++   S
Sbjct: 563 HPSFQYLKHLFPSLCSNKTILDFQCEVCELAKHHRTSFPKSKYKPSIPFTLIHSDLWGPS 622

Query: 302 NILLRS--------------------ITDKSEVSSIFQNFYHTIETQFHTKIAIIGRD 311
               R+                    +TDK+EV S+F NF++ I+TQFHTKI I+  D
Sbjct: 623 RTPNRTHKKWFITFIDDHTRLCWVYLLTDKTEVRSVFMNFHYMIQTQFHTKIQILRTD 675

[Close]
BLAST of Cucsa.365900 vs. NCBI nr
Match: gi|147805017|emb|CAN60373.1| (hypothetical protein VITISV_034932 [Vitis vinifera])

HSP 1 Score: 197.2 bits (500), Expect = 5.7e-47
Identity = 137/405 (33.83%), Postives = 200/405 (49.38%), Query Frame = 1 

Query: 50  GVIAQLGMLQSLGLISVDGKNSLNLDSGATDHWTSFLEHFIFYAPCVSNEKVQVVNDPLA 109
           G +A  G   S    S   K    +DSGA+DH T     F  Y+ C +N  V++ +  L+
Sbjct: 273 GTLAHKGNFLSAFTASKKRKKPWIVDSGASDHMTGNATIFYTYSSCPNNLTVRIADGSLS 332

Query: 110 PITSKGQIAPFYDFALHNVLHVPKLSYNLLSISKITRELHCKVIFLPESVCFQDMSSRRT 169
            +     +    D  L++VL VP L  NLLSISK+T+E  C   F      FQD+ S +T
Sbjct: 333 KVAGTSSVVLSRDLTLNSVLLVPHLDCNLLSISKLTKEKRCITNFSSTHCEFQDLDSGKT 392

Query: 170 IVIAQHSGGLYIL---DDDTFGSSFSRASLLPCFSTSKHD--CMLWHFRLSHPNFRYMQY 229
           I  A+   GLYIL    D       +  S     S   +D   MLWH+RL HPN +Y+++
Sbjct: 393 IGNAEECSGLYILKERHDPQEQPQMAVGSNSFSVSCQNNDSAIMLWHYRLGHPNVKYLKH 452

Query: 230 LFLHPFSKRDVSSLSRDVCIRVKQHWVSFSLQPYKHIQLFTLIHNNV------------- 289
           LF   F+K +  S   ++C   KQ    F +QPYK    F++IH+++             
Sbjct: 453 LFPSLFNK-NPKSFECEICQLSKQVRSQFPIQPYKESSPFSMIHSDIWGPSRIKNVTGEF 512

Query: 290 ----SNILLRSITDKSEVSSIFQ-NFYHTIET----QFHTKI-AIIGRDVILTAAYLINR 349
                 + L S  D  + + I +    H +E      F   +  ++    +LTAAYLINR
Sbjct: 513 LAQEGIVHLSSCVDTPQQNGIAERKNRHLLEVARSLMFSMNVPKLLWGQAVLTAAYLINR 572

Query: 350 MSSRILHLHTPLDCLKQSLQSYPSTLLISEVSLLVFRCTTCVH-------NFGPNQ-PCV 409
           M SR+L   TP   L   L+S+P+T LIS V   +F C+  VH          P    C+
Sbjct: 573 MPSRVLKFQTPCQTL---LKSFPTTRLISTVPPKIFGCSVFVHINQQHRSKLDPRSLKCI 632

Query: 410 FVGYPLHQCSYKCFHPSCRKYFDTMDVTFCEDKPYFLVSHLQGES 419
           F+GY  +Q  YKC+ P  RK++++MDVTF E +PY+  + +QGE+
Sbjct: 633 FLGYSSNQKGYKCYSPVTRKFYNSMDVTFFETQPYYPKNDIQGEN 673

[Close]
BLAST of Cucsa.365900 vs. NCBI nr
Match: gi|147784156|emb|CAN77225.1| (hypothetical protein VITISV_002211 [Vitis vinifera])

HSP 1 Score: 180.6 bits (457), Expect = 5.5e-42
Identity = 134/447 (29.98%), Postives = 212/447 (47.43%), Query Frame = 1 

Query: 1   KLRGRPPGGKKRSSNKKHNLGYAHVSETTTANTSQSTDLTTSQTKTPTLGVIAQLGMLQS 60
           KL  +P   K +  + +   G AHV+  + +           +       +++Q+G   +
Sbjct: 530 KLHDKPXDWKPKPRSDRD--GRAHVAANSESTXVPEPSPFNKEQMEMLQKLLSQVGSGST 589

Query: 61  LGLISVDGKNSLN---LDSGATDHWTSFLEHFIFYAPCVSNEKVQVVNDPLAPITSKGQI 120
            G+     +  +    +D+GA+DH T        Y P   +  V + +   + I   G I
Sbjct: 590 TGIALTASRGGMKPWIVDTGASDHMTGDAAILQNYKPSNGHSSVHIADGSKSKIAGTGSI 649

Query: 121 APFYDFALHNVLHVPKLSYNLLSISKITRELHCKVIFLPESVCFQDMSSRRTIVIAQHSG 180
               D  L +VLHVP L  NLLSISK+ R+L C   F P S  FQD+ S + I  A+   
Sbjct: 650 KLTKDLYLDSVLHVPNLDCNLLSISKLARDLQCVTKFYPNSCVFQDLKSGKMIGSAELCS 709

Query: 181 GLYILDDDTFGSSFSRA------SLLPCF---STSK----HDCMLWHFRLSHPNFRYMQY 240
           GLY+L    F +  S+A      S+L  F   S SK     + ++ H+RL HP+F Y+  
Sbjct: 710 GLYLLSCGQFSNQVSQASCVQSQSMLESFNXVSNSKVNKDSEIIMLHYRLGHPSFVYLXK 769

Query: 241 LFLHPFSKRDVSSLSRDVCIRVKQHWVSFSLQPYKHIQLFTLIHNNVSNILLRSITDKSE 300
           LF   F  ++ +S   ++C   K     +   PYK   +F+L+H++V             
Sbjct: 770 LFPKLFINKNPASYHCEICQFAKHTRTVYPQIPYKPSTVFSLVHSDVWG----------- 829

Query: 301 VSSIFQNFYHTIETQ---FHTKIA-IIGRDVILTAAYLINRMSSRILHLHTPLDCLKQSL 360
            S I + F+H++  +   F + +      + ILTA YLINRM SR+L   +P       L
Sbjct: 830 PSRIKKYFWHSMVARCLMFSSNVPNYFWGEAILTATYLINRMPSRVLTFQSPRQLF---L 889

Query: 361 QSYPSTLLI-SEVSLLVFRCTTCVHNFGPNQ--------PCVFVGYPLHQCSYKCFHPSC 419
           + +P T    S++ L VF CT  VH +  N+         C+F+GY   Q  YKC+ P+ 
Sbjct: 890 KQFPHTXAASSDLPLKVFGCTXFVHVYPQNRSKFAPRANKCIFLGYSPTQKGYKCYSPTN 949

[Close]
BLAST of Cucsa.365900 vs. NCBI nr
Match: gi|147863556|emb|CAN84036.1| (hypothetical protein VITISV_024166 [Vitis vinifera])

HSP 1 Score: 179.5 bits (454), Expect = 1.2e-41
Identity = 132/382 (34.55%), Postives = 186/382 (48.69%), Query Frame = 1 

Query: 74  LDSGATDHWTSFLEHFIFYAPCVSNEKVQVVNDPLAPITSKGQIAPFYDFALHNVLHVPK 133
           +DS ATDH T   + F  Y    SN+K+ V N  L  +   G I       L NVLHVPK
Sbjct: 298 IDSDATDHMTFKSQLFNTYTLSPSNKKIVVANGSLVTVAGFGDIYITPTLILKNVLHVPK 357

Query: 134 LSYNLLSISKITRELHCKVIFLPESVCFQDMSSRRTIVIAQHSGGLYILDDDTFGSSFSR 193
           LS NL+SI K+T +L C  IF P     Q+  S R I +A+   GLY L+     S+   
Sbjct: 358 LSANLVSIQKLTHDLKCYAIFFPSYCVLQEQGSGRRIGLAKEMSGLYHLESSQKTSNNLS 417

Query: 194 ASLLPCFSTSKHDCMLWHFRLSHPNFRYMQYLFLHPFSKRDVSSLSRDVCIRVKQHWVSF 253
            SLL   S++K    L+H RL HP+FR ++ +F H F   D+S    + C   K   V F
Sbjct: 418 LSLLS--SSNKDTIWLYHLRLGHPSFRVLKVMFPHLFQGLDISEFHCETCELAKHTRVYF 477

Query: 254 SLQPYKHIQLFTLIHN---------NVSN-----ILLRSIT-----DKSEVSSIFQNFY- 313
            +   +    F LIH+         NVS       L+   T     D S +++  QN   
Sbjct: 478 PISNKRSSHPFHLIHSDIWGPSTIPNVSGARWFVFLIDDCTRGILHDSSCINTPQQNGVA 537

Query: 314 -----HTIET------QFHTKIAIIGRDVILTAAYLINRMSSRILHLHTPLDCLKQSLQS 373
                H + T      Q +   +  G + +LTA Y+INR+ SR+L   +P++ LK     
Sbjct: 538 ERKNGHLLNTTRALLFQGNVPKSYWG-EAVLTATYMINRIPSRVLDNKSPVEILKSF--- 597

Query: 374 YPSTLLISEVSLLVFRCTTCVHNFGPNQP--------CVFVGYPLHQCSYKCFHPSCRKY 417
           YP     + ++  VF CT  VH    ++         CVF+GY   +  YKC++PS RK+
Sbjct: 598 YPHFRTSNGITPRVFGCTAFVHVHSQHRDKLDPRVIKCVFLGYSSTKKGYKCYNPSARKF 657

[Close]
BLAST of Cucsa.365900 vs. NCBI nr
Match: gi|147863556|emb|CAN84036.1| (hypothetical protein VITISV_024166 [Vitis vinifera])

HSP 1 Score: 44.3 bits (103), Expect = 6.2e-01
Identity = 25/57 (43.86%), Postives = 30/57 (52.63%), Query Frame = 1 

Query: 74  LDSGATDHWTSFLEHFIFYAPCVSNEKVQVVNDPLAPITSKGQIAPFYDFALHNVLH 131
           +DS ATDH TS  + F  Y P  SN+K+ V N  LA +     I     F L NVLH
Sbjct: 45  IDSSATDHMTSKSQLFHTYTPSPSNKKIAVANGSLATVAGFRDIYITPTFILKNVLH 101


HSP 2 Score: 33.9 bits (76), Expect = 8.3e+02
Identity = 14/29 (48.28%), Postives = 22/29 (75.86%), Query Frame = 1 

Query: 309 RDVILTAAYLINRMSSRILHLHTPLDCLK 338
           R+ +LTA Y+INR+ SR+L   +P++ LK
Sbjct: 171 RETVLTATYMINRILSRVLDNKSPVEILK 199


HSP 3 Score: 179.1 bits (453), Expect = 1.6e-41
Identity = 124/367 (33.79%), Postives = 180/367 (49.05%), Query Frame = 1 

Query: 74  LDSGATDHWTSFLEHFIFYAPCVSNEKVQVVNDPLAPITSKGQIAPFYDFALHNVLHVPK 133
           +D+GA+DH T        Y P   +  V + +   + I   G I    D  L  V HVP 
Sbjct: 446 VDTGASDHMTGDAAILQNYKPSNGHSSVHIADGSKSKIAGTGSIKLSKDLYLDFVFHVPN 505

Query: 134 LSYNLLSISKITRELHCKVIFLPESVCFQDMSSRRTIVIAQHSGGLYILDDDTFGSSFSR 193
           L  NLLSISK+ R+L C   F P S  FQD+ S + I  A+   GLY+L    F +  S+
Sbjct: 506 LDCNLLSISKLARDLQCVTKFYPNSCVFQDLKSGKMIGSAEPCSGLYLLTCGQFSNQVSQ 565

Query: 194 A------SLLPCF---STSK----HDCMLWHFRLSHPNFRYMQYLFLHPFSKRDVSSLSR 253
           A      S+L  F   S SK     + +  H+RL HP+F Y+  LF   F  ++ +S   
Sbjct: 566 ASCVQSQSMLESFNSVSNSKVNKDSEIITLHYRLGHPSFVYLAKLFPKLFINKNPASYHX 625

Query: 254 DVCIRVKQHWVSFSLQPYKHIQLFTLIHNNVSNILLRSITDKSEVSSIFQNFYHTIETQF 313
           ++C   K     +   PYK    F+L+H++V           S + +I    +       
Sbjct: 626 EICQFAKHTXTVYPQIPYKPSTXFSLVHSDV--------WGXSRIKNISGTRWFVTFVDD 685

Query: 314 HTKIAIIGRDVILTAAYLINRMSSRILHLHTPLDCLKQSLQSYPST-LLISEVSLLVFRC 373
           HT+      + ILTA YLINRM SR+L   +P   L   L+ +P T    S++ L VF C
Sbjct: 686 HTR-----GEAILTATYLINRMPSRVLTFQSPRQLL---LKKFPHTHAASSDLPLKVFDC 745

Query: 374 TTCVHNFGPNQ--------PCVFVGYPLHQCSYKCFHPSCRKYFDTMDVTFCEDKPYFLV 419
           TT VH +  N+         C+F+GY   +  YKC+ P+ +K++ TMDV+F E   ++  
Sbjct: 746 TTFVHVYPQNRSKFAPQANKCIFLGYSPTKKGYKCYSPTNKKFYTTMDVSFFEHVFFYPK 796

[Close]
BLAST of Cucsa.365900 vs. NCBI nr
Match: gi|147792973|emb|CAN73102.1| (hypothetical protein VITISV_042891 [Vitis vinifera])

HSP 1 Score: 167.5 bits (423), Expect = 4.8e-38
Identity = 119/358 (33.24%), Postives = 173/358 (48.32%), Query Frame = 1 

Query: 2   LRGRPPGGKKRSSNKKHNL-----GYAHVSETTTANTSQSTDLTTSQ------------- 61
           L G+P   K R  NK H+        A  + T    ++ S    ++Q             
Sbjct: 323 LHGKPADWKPRQPNKAHSHQASTEAQADKTPTEVCQSTSSVGFNSNQIAKLYELFSNFQA 382

Query: 62  ----TKTPTLGVIAQLGMLQSLGLISVDGKNSLNLDSGATDHWTSFLEHFIFYAPCVSNE 121
               + T + G +A+ G   +  L ++       +DSGA+DH T     F  Y+PC  N 
Sbjct: 383 SGQSSTTLSSGSLAKKGTFLT-ALSTMSQTIPWIVDSGASDHMTDAHHLFSTYSPCAGNL 442

Query: 122 KVQVVNDPLAPITSKGQIAPFYDFALHNVLHVPKLSYNLLSISKITRELHCKVIFLPESV 181
           KV++ +  L+P+  KG I       L+ VLHVP LS NLLSIS++T++ +C   FL    
Sbjct: 443 KVKIADGTLSPVAGKGSIRISESITLNPVLHVPNLSCNLLSISQLTKKSNCSAKFLSSHC 502

Query: 182 CFQDMSSRRTIVIAQHSGGLYILDD-DTFGSSFSRASLLPCFSTS---KHDCMLWHFRLS 241
            FQD+SS +TI  A+   GLY  D+ D  G S    S   C STS     + +LWH R+ 
Sbjct: 503 VFQDLSSGKTIGSAKEREGLYYFDETDVLGQS----SPTVCNSTSYSKDSELLLWHKRMG 562

Query: 242 HPNFRYMQYLFLHPFSKRDVSSLSRDVCIRVKQHWVSFSLQPYKHIQLFTLIHNNV---S 301
           HP+F+Y+++LF    S + +     +VC   K H  SF    YK    FTLIH+++   S
Sbjct: 563 HPSFQYLKHLFPSLCSNKTILDFQCEVCELAKHHRTSFPKSKYKPSIPFTLIHSDLWGPS 622

Query: 302 NILLRS--------------------ITDKSEVSSIFQNFYHTIETQFHTKIAIIGRD 311
               R+                    +TDK+EV S+F NF++ I+TQFHTKI I+  D
Sbjct: 623 RTPNRTHKKWFITFIDDHTRLCWVYLLTDKTEVRSVFMNFHYMIQTQFHTKIQILRTD 675

The following BLAST results are available for this feature:
BLAST of Cucsa.365900 vs. TrEMBL
Match NameE-valueIdentityDescription
A5ALJ9_VITVI4.0e-4733.83Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034932 PE=4 SV=1[more]
A5BS42_VITVI3.8e-4229.98Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002211 PE=4 SV=1[more]
A5C7R1_VITVI8.6e-4234.55Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024166 PE=4 SV=1[more]
A5C7R1_VITVI4.3e-0143.86Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024166 PE=4 SV=1[more]
A5C6A5_VITVI3.4e-3833.24Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042891 PE=4 SV=1[more]
BLAST of Cucsa.365900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147805017|emb|CAN60373.1|5.7e-4733.83hypothetical protein VITISV_034932 [Vitis vinifera][more]
gi|147784156|emb|CAN77225.1|5.5e-4229.98hypothetical protein VITISV_002211 [Vitis vinifera][more]
gi|147863556|emb|CAN84036.1|1.2e-4134.55hypothetical protein VITISV_024166 [Vitis vinifera][more]
gi|147863556|emb|CAN84036.1|6.2e-0143.86hypothetical protein VITISV_024166 [Vitis vinifera][more]
gi|147792973|emb|CAN73102.1|4.8e-3833.24hypothetical protein VITISV_042891 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025724GAG-pre-integrase_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.365900.1Cucsa.365900.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 178..248
score: 1.
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 74..409
score: 1.2
NoneNo IPR availablePANTHERPTHR11439:SF185SUBFAMILY NOT NAMEDcoord: 74..409
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.365900CSPI06G02550Wild cucumber (PI 183967)cgycpiB540
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.365900Wax gourdcgywgoB733
Cucsa.365900Cucurbita maxima (Rimu)cgycmaB0989
Cucsa.365900Cucurbita maxima (Rimu)cgycmaB1003
Cucsa.365900Cucurbita moschata (Rifu)cgycmoB0991
Cucsa.365900Cucurbita moschata (Rifu)cgycmoB1003
Cucsa.365900Cucumber (Chinese Long) v2cgycuB511
Cucsa.365900Melon (DHL92) v3.5.1cgymeB592
Cucsa.365900Watermelon (Charleston Gray)cgywcgB622
Cucsa.365900Watermelon (Charleston Gray)cgywcgB627
Cucsa.365900Watermelon (97103) v1cgywmB656
Cucsa.365900Cucurbita pepo (Zucchini)cgycpeB0964
Cucsa.365900Cucurbita pepo (Zucchini)cgycpeB0967
Cucsa.365900Bottle gourd (USVL1VR-Ls)cgylsiB591
Cucsa.365900Melon (DHL92) v3.6.1cgymedB588
Cucsa.365900Silver-seed gourdcarcgyB0757
Cucsa.365900Cucumber (Chinese Long) v3cgycucB556
Cucsa.365900Watermelon (97103) v2cgywmbB627
Cucsa.365900Watermelon (97103) v2cgywmbB633