Cucsa.365560 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.365560
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	scaffold03611 : 3389072 .. 3392257 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACTAAATCCCTTGGGAACTCTTGTATTTTTTAGATTTGGGATCAGGGAAGATGATTGGCTTGGCAATACTGAATTATGTGCAGTATTGTATCTTCTTAAAACAATGAGTCCTCCACCAACAATGAAACACAGTAAACATGTAGTTCACTCTAATTGCGAGCCTGTTTTTGTTACTGAGTCTTTAAACCATTAAAATAAAGATAGTCTTATCATGATGTTGCACTATCATCTTGGTCATCCCAACATTCCCTATTTTGCGTGTCTGTACCCTGCTTTATTCCTAATAAAGAGTCAGTTTTTCCGCTGTGAAGTTTATCAACTCCTCAGACACACACGTGCTCAAATTTTACCTCACACTTATTCTCCATCTCAACCTTTCTCTCTTATCCAAGGGGATATTTGGGGACCTTCAAGGGTAAAAAATATAATGGGGCACGATGGTTTCTTCTTTTAGTTGATGATCACACCCGCCTAAGTTGGACCTTCCTTATGAAAGATAAGTTTGAAACTAGTCAATTAAAAaCAGTTTTTCATAAAATGATCCAAACTCAGTTTCAAGTAAATATCCAAATACTCAAGACTGACAATGCTCGTGATTTCTTCAACTCTACTCTTGGACCATAGCTTCAATCTCATGGTATTGTTCACCAAAGTTCTTGATGTAGCTCGATCCCTCATGCTCACGTCACATGTTCCAGAAAGATTTTAAGGTGAGGCTGTTCTTACTACTACATATCTGATAAAATGACTGCCCTTCCGCATTCAGAAGTTCAACACACCCTTACAAAGTCTTCTTACACTATATCCTACTTCCCATCTTGTGTCTCCTCTACTGCTAAAACTATTTGGATGTACTGGATTTATGCATTTGTATTCTCAACATCAAATTAAACTTGATGCACAATCTATAAAATGCACTTTTCTCGGCTACTCACCAAACAAAAAAGGGTATAAGTGTTATCATCCTCCAACTCACCTATTCTTTCATATCTTGGGTATCACATTTTTGAAAGTCAACCATATTATCCCAATTATGCAACTCAGAGGGAGCATAACGATCTTGAACCACAAAATTGGGACCAGGACTTTCCTTCAAACTCATCCTTTGAAAGTTCTTATGGCCTCTCCTCTGAGTCACCTCCTATTACCTTGAGACTGAACTGCAAGTTTATTCACGAAGAGTTAGACAATCTGAGACAAATGAAGTACAACCTACACAAGTTCAGCAAGGTCAGCAAGGCCAGGATTTGAATCAGAATTCCAATGTGTCAGAAATAGTACACTATAGGACGCAAGATGATCTGTACAGACCCATTGTGTAGGGAAAGGTGTTCGCTCATGTACTCAACATCACATACAGTATCACTTATCTTACAATAATTTGTCACCTTATTTTAAGGCTTTTATGACTTCTTTAGATCAAATACAAATTCCCAAAACAGTTCAAGAAGCTTACAGAGGTCTGACTGGAAAGCAGCTATACTAGAGGAGTCACAGGCACTTGAGAAAAATAAGACGTTGATCCTTACTAATTTGCCACTAGGAAAACAGACAGTTGGATGTAAATAGATTTTCTCAACAAAACATAGACCCTACTGACAAAACACAGACCTGATGCAGTATAGAGCAGTTTAAAGCTTATCTTGTTGCCAAAATATTCACCTAGGCTTATGGGATTGATTACCAAGAAACCTTTGCACCAGTTGCTAAGTTGAACACTATTCAAGTATTTCTCTCTGTTAGTGATATATAACTAAATTTGCCTTCAACCATTAGCTTAAGCTTTTGGATAAATTGGTGATTGAAGATGGTATCAGAGCAGATGGTCCAAGGAGGTCCTGTATTCAAGCCCTTGCATTGTTGTTTCCTCAGTTGAAATTGATTTCTACTTGTTGGGCCATCTAAATATTTCAAGCCCACAAGTGAGGGAGAGAGTTAGTGATATATAATTAAATTTGCCTTCAACCACTAGCTTAAACTTTTGGGTGAATTGATGATTTAAGACTCTCTATTGCAGCAATTCTCAATTGGCCACCATTTCAGCTTGAGGTAAAGAATGCATTTCTAAATGGTGATCCATTGGAAGAGGTGTACATGGAAATACCTCATGGATTTAAGATCAAATATACTACAGGAAAGGTATGTAAGCTCTAGAAGTCTCTCTATGGTCTAAAATAGTGACCTCGGGCCTGGTTTGGAAAATTTACGAATGTGCTTAATGAAGATGGCTATACTCATTGTCAATCCAATCATACAATGTTCATCAAATGTTTCTCAGCAAGTAAGATTACTATGTGAATGATACTGTTGTCACAAGAAATGTTCTCGATGAAATAAATCAACTAAAACATCTTCTCTTAAAGAAATATGAAATTAAAGACTTGGGACATCTATGATACTTTCTAGGAATGGAAGTAGCAAGATCTAGCAAATGAATCTGTCAGTCAATGGAAATACACTTTAGATCTCTTAAATGAAACAGGGCCGAGTGGTTGCAAACCAGTTGATACTCCTATGAATGGAAACTCAAAGCTTGGAGTTAATCCTAAAGACGAACAAGTTGATCAAGGTAGGTATCAACGACTAGTTGGAAAGCTAATATATTTCACTCATACTCAACCAGACATCAGCTTTGCTGTTAGCGTGGTAAGTTAATTTTTAAACAAATCCTCTAAGGTGCATATGGAATTTGTGTATAGGATATTGCAATATCTCAAGCACGATCCTGGAAAGGGTCTCTTGTTCAGAAAGAATACAAACAACTCTTTAGAAGTTTACACCGATGCTAATTGGCTGGATCTCCTATTGACCGCAAGTCAACCTTAGGATATTGCTCTTATGTATGGGGAAACATAGTAACTTGGCGAAGTTAGCAACAAGTTGTTTCCCGAAGCAGTGCTGAAGTTGAGTTTCAATCTTTAGTCCATGGGATTTGTGAAGAAATTTGGCTGAAACACCTTATAACTGAGCTTAAGGTCAACGTCAAAGGTACTATTGAAGTACTATGTGATAATCAATCTGCCATAGCCATTGCAAGAAATCTGATATGCCATGAGCCATTGCGAGAAATCTGATATGCCATGATCGAATGAAACATGTCCACATAGATTGTCACTTCATTAGTGAGAAAATTGATTCGGATACAATCAACTTGAGATATGTACCTTCCAACAACAAGTAG

mRNA sequence

atgaaactaaatcccttgggaactcttgtattttttagatttgggatcagggaagatgattggcTTGGCAATACTGAATTATGTGCAGTATTGTATCTTCTTAAAACAATGAGTCCTCCACCAACAATGAAACACAATAGTCTTATCATGATGTTGCACTATCATCTTGGTCATCCCAACATTCCCTATTTTGCGTGTCTGTACCCTGCTTTATTCCTAATAAAGAGTCAGTTTTTCCGCTGTGAAGTTTATCAACTCCTCAGACACACACGTGCTCAAATtttacctcacacttattctccatctcaacctttctctcttatccaaggggatatttggggaccttcaaggAAGTTCAACACACCCTTACAAAGTCTTCTTACACTATATCCTACTTCCCATCTTGTGTCTCCTCTACTGCTAAAACTATTTGGATGTACTGGATTTATGCATTTGTATTCTCAACATCAAATTAAACTTGATGCACAATCTATAAAATGCACTTTTCTCGGCTACTCACCAAACAAAAAAGGGTATAAGTGTTATCATCCTCCAACTCACCTATTCTTTCATATCTTGGGGAAAGGTGTTCGCTCATGTACTCAACATCACATACAGTATCACTTATCTTACAATAATTTGTCACCTTATTTTAAGGCTTTTATGACTTCTTTAGATCAAATACAAATTCCCAAAACAGTTCAAGAAGCTTACAGAGCAATTCTCAATTGGCCACCATttcagcttgaggtaaagaatgcatttctaaatggtgatccattggaagaggtgtacatggaaataccTCATGGATTTAAGATCAAATATACTACAGGAAagcaagatctagcaaatgaatctgtcagtcaatggaaatacactttagatctcttaaatgaaacagggccgagtggttgcaaaccagttgatactcctatgaatggaaactcaaagcttggagttaatcctaaagacgaacaagttgatcaaggtaggtatcaacgactagttggaaagctaatatatttcactcatactcaaccagacatcagctttgctgttagcgtggtgcatatggaatttgtgtataggatattgcaatatctcaagcacgatcctggaaagggtctcttgttcagaaagaatacaaacaactctttagaagtttacaccgatgctaattggctggatctcctattgaccgcaattgtttcccgaagcagtgctgaagttgagtttcaatctttagtccatgggatttgtgaagaaatttggctgaaacaccttataactgagcttaaggtcaacgtcaaaggtactattgaagtactatCCATTGCGAGAAATCTGATATGCCATGATCGAATGAAACATGTCCACATAGATTGTCACTTCATTAGTGAGAAAATTGATTCGGATACAATCAACTTGAGATATGTACCTTCCAACAACAAGTAG

Coding sequence (CDS)

ATGAAACTAAATCCCTTGGGAACTCTTGTATTTTTTAGATTTGGGATCAGGGAAGATGATTGGCTTGGCAATACTGAATTATGTGCAGTATTGTATCTTCTTAAAACAATGAGTCCTCCACCAACAATGAAACACAATAGTCTTATCATGATGTTGCACTATCATCTTGGTCATCCCAACATTCCCTATTTTGCGTGTCTGTACCCTGCTTTATTCCTAATAAAGAGTCAGTTTTTCCGCTGTGAAGTTTATCAACTCCTCAGACACACACGTGCTCAAATTTTACCTCACACTTATTCTCCATCTCAACCTTTCTCTCTTATCCAAGGGGATATTTGGGGACCTTCAAGGAAGTTCAACACACCCTTACAAAGTCTTCTTACACTATATCCTACTTCCCATCTTGTGTCTCCTCTACTGCTAAAACTATTTGGATGTACTGGATTTATGCATTTGTATTCTCAACATCAAATTAAACTTGATGCACAATCTATAAAATGCACTTTTCTCGGCTACTCACCAAACAAAAAAGGGTATAAGTGTTATCATCCTCCAACTCACCTATTCTTTCATATCTTGGGGAAAGGTGTTCGCTCATGTACTCAACATCACATACAGTATCACTTATCTTACAATAATTTGTCACCTTATTTTAAGGCTTTTATGACTTCTTTAGATCAAATACAAATTCCCAAAACAGTTCAAGAAGCTTACAGAGCAATTCTCAATTGGCCACCATTTCAGCTTGAGGTAAAGAATGCATTTCTAAATGGTGATCCATTGGAAGAGGTGTACATGGAAATACCTCATGGATTTAAGATCAAATATACTACAGGAAAGCAAGATCTAGCAAATGAATCTGTCAGTCAATGGAAATACACTTTAGATCTCTTAAATGAAACAGGGCCGAGTGGTTGCAAACCAGTTGATACTCCTATGAATGGAAACTCAAAGCTTGGAGTTAATCCTAAAGACGAACAAGTTGATCAAGGTAGGTATCAACGACTAGTTGGAAAGCTAATATATTTCACTCATACTCAACCAGACATCAGCTTTGCTGTTAGCGTGGTGCATATGGAATTTGTGTATAGGATATTGCAATATCTCAAGCACGATCCTGGAAAGGGTCTCTTGTTCAGAAAGAATACAAACAACTCTTTAGAAGTTTACACCGATGCTAATTGGCTGGATCTCCTATTGACCGCAATTGTTTCCCGAAGCAGTGCTGAAGTTGAGTTTCAATCTTTAGTCCATGGGATTTGTGAAGAAATTTGGCTGAAACACCTTATAACTGAGCTTAAGGTCAACGTCAAAGGTACTATTGAAGTACTATCCATTGCGAGAAATCTGATATGCCATGATCGAATGAAACATGTCCACATAGATTGTCACTTCATTAGTGAGAAAATTGATTCGGATACAATCAACTTGAGATATGTACCTTCCAACAACAAGTAG

Protein sequence

MKLNPLGTLVFFRFGIREDDWLGNTELCAVLYLLKTMSPPPTMKHNSLIMMLHYHLGHPNIPYFACLYPALFLIKSQFFRCEVYQLLRHTRAQILPHTYSPSQPFSLIQGDIWGPSRKFNTPLQSLLTLYPTSHLVSPLLLKLFGCTGFMHLYSQHQIKLDAQSIKCTFLGYSPNKKGYKCYHPPTHLFFHILGKGVRSCTQHHIQYHLSYNNLSPYFKAFMTSLDQIQIPKTVQEAYRAILNWPPFQLEVKNAFLNGDPLEEVYMEIPHGFKIKYTTGKQDLANESVSQWKYTLDLLNETGPSGCKPVDTPMNGNSKLGVNPKDEQVDQGRYQRLVGKLIYFTHTQPDISFAVSVVHMEFVYRILQYLKHDPGKGLLFRKNTNNSLEVYTDANWLDLLLTAIVSRSSAEVEFQSLVHGICEEIWLKHLITELKVNVKGTIEVLSIARNLICHDRMKHVHIDCHFISEKIDSDTINLRYVPSNNK*

Homology

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BLAST of Cucsa.365560 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-16
Identity = 65/242 (26.86%), Postives = 112/242 (46.28%), Query Frame = 1


Query: 288  VSQWKYTLDLLNETGPSGCKPVDTPMNGNSKLGVNPKDEQVDQGRYQRLVGKLIYFTH-T 347
            +SQ  Y   +L++     C  V TP+       +   DE  +    + L+G L+Y    T
Sbjct: 1137 LSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTP-CRSLIGCLMYIMLCT 1196

Query: 348  QPDISFAVSVVHM----------EFVYRILQYLKHDPGKGLLFRKNT--NNSLEVYTDAN 407
            +PD++ AV+++            + + R+L+YLK      L+F+KN    N +  Y D++
Sbjct: 1197 RPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSD 1256

Query: 408  W----LDLLLTA--------------------IVSRSSAEVEFQSLVHGICEEIWLKHLI 467
            W    +D   T                      V+ SS E E+ +L   + E +WLK L+
Sbjct: 1257 WAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLL 1316

Query: 468  TELKVNVKGTIEV-------LSIARNLICHDRMKHVHIDCHFISEKIDSDTINLRYVPSN 486
            T + + ++  I++       +SIA N  CH R KH+ I  HF  E++ ++ I L Y+P+ 
Sbjct: 1317 TSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTE 1376

HSP 2 Score: 34.7 bits (78), Expect = 3.5e+00
Identity = 14/24 (58.33%), Postives = 18/24 (75.00%), Query Frame = 1


Query: 248  QLEVKNAFLNGDPLEEVYMEIPHG 272
            Q++VK AFLNG   EE+YM +P G
Sbjct: 1000 QMDVKTAFLNGTLKEEIYMRLPQG 1023

[Close]

BLAST of Cucsa.365560 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.9e-10
Identity = 48/171 (28.07%), Postives = 76/171 (44.44%), Query Frame = 1


Query: 288 VSQWKYTLDLLNETGPSGCKPVDTPMNGNSKLGVNPKDEQVDQGRYQRLVGKLIYFTHTQ 347
           +SQ KY   +LN  G   CKP+ TP+       V+   +  D   ++ +VG L Y T T+
Sbjct: 56  LSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTA-KYPDPSDFRSIVGALQYLTLTR 115

Query: 348 PDISFAVSVV----------HMEFVYRILQYLKHDPGKGLLFRKNTNNSLEVYTDANWLD 407
           PDIS+AV++V            + + R+L+Y+K     GL   KN+  +++ + D++W  
Sbjct: 116 PDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAG 175

Query: 408 LLLT-----------------------AIVSRSSAEVEFQSLVHGICEEIW 426
              T                         VSRSS E E+++L     E  W
Sbjct: 176 CTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cucsa.365560 vs. TrEMBL
Match: A5BUX6_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_024743 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.3e-54
Identity = 125/276 (45.29%), Postives = 167/276 (60.51%), Query Frame = 1


Query: 239  RAILNWPPFQLEVKNAFLNGDPLEEVY---------MEIPHGFKIKYTTGKQDLANES-- 298
            +A+L     Q+ V +  L+G+ +EE+           E+     +KY  G +   +    
Sbjct: 802  KAVLKLGYKQVYVDDIILSGNDMEELQNLKKYLSEEFEVKDLGNLKYFLGMEVARSRKGI 861

Query: 299  -VSQWKYTLDLLNETGPSGCKPVDTPMNGNSKLGVNPKDEQVDQGRYQRLVGKLIYFTHT 358
             VSQ KY LDLL ETG  GCKP+DTPM+   KLG+  +   VD+GRYQRLVG+LIY +HT
Sbjct: 862  VVSQRKYILDLLKETGMLGCKPIDTPMDSQKKLGIEKESTPVDKGRYQRLVGRLIYLSHT 921

Query: 359  QPDISFAVSVV----------HMEFVYRILQYLKHDPGKGLLFRKNTNNSLEVYTDANWL 418
            +PDI FAVS V          HME VYRIL+YLK  PGKGL FRK  N   EVY++A+W 
Sbjct: 922  RPDIGFAVSAVSQFMHSPTEEHMEAVYRILRYLKMAPGKGLFFRKTENRDTEVYSNADWA 981

Query: 419  DLLLTAIVSRSSAEVEFQSLVHGICEEIWLKHLITELKVNVKGTI-------EVLSIARN 478
               LT   +RSSAE E+++L  GICE IW+K +++EL       I         +SIA+N
Sbjct: 982  GTSLTG--ARSSAEAEYRALAQGICEGIWIKRVLSELGQTSSSPILMMCDNQAAISIAKN 1041

Query: 479  LICHDRMKHVHIDCHFISEKIDSDTINLRYVPSNNK 486
             + HDR KHV ID HFI+EK+ S+T+ L YVP+ ++
Sbjct: 1042 PVHHDRTKHVEIDRHFITEKVTSETVKLNYVPTKHQ 1075

[Close]

BLAST of Cucsa.365560 vs. TrEMBL
Match: A5BUX6_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_024743 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.2e-08
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1


Query: 124 QSLLTLYPTSHLVSPLLL---KLFGCTGFMHLYSQHQIKLDAQSIKCTFLGYSPNKKGYK 183
           QS+L  + +     PLL+   K+FGCT F+H+Y Q++ K   ++ KC FLGYSP +KGYK
Sbjct: 381 QSMLESFNSVSNSKPLLIYHSKVFGCTTFVHVYPQNRSKFAPRANKCIFLGYSPTQKGYK 440

Query: 184 CYHPPTHLFF 191
           CY P    F+
Sbjct: 441 CYSPTNKRFY 450

HSP 2 Score: 57.0 bits (136), Expect = 7.4e-05
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 1


Query: 193 LGKGVRSCTQHHIQYHLSYNNLSPYFKAFMTSLDQIQIPKTVQEAYRAILNW 245
           L KGVR C  H I  +++Y  LSP ++AF TSLD  Q+P T+QEA++ I  W
Sbjct: 602 LSKGVRRCXDHPIGNYVTYEGLSPSYRAFATSLDDTQVPNTIQEAFK-ISEW 652

HSP 3 Score: 45.8 bits (107), Expect = 1.7e-01
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 1


Query: 243 NWPPFQLEVKNAFLNGDPLEEVYMEIPHGFK 274
           +W   QL++KNAFLNGD  EEVYMEIP GF+
Sbjct: 741 DWCLQQLDIKNAFLNGDLEEEVYMEIPPGFE 771

HSP 4 Score: 218.8 bits (556), Expect = 1.5e-53
Identity = 125/239 (52.30%), Postives = 156/239 (65.27%), Query Frame = 1


Query: 287 SVSQWKYTLDLLNETGPSGCKPVDTPMNGNSKLGVNPKDEQVDQGRYQRLVGKLIYFTHT 346
           SVSQ KY LDLL ETG  GC+ VDTPM+ N+KL    ++  VD+G+YQRLVGKLIY TH 
Sbjct: 120 SVSQRKYVLDLLKETGMIGCRLVDTPMDPNTKLMPRTEEMAVDKGQYQRLVGKLIYLTHM 179

Query: 347 QPDISFAVS----------VVHMEFVYRILQYLKHDPGKGLLFRKNTNNSLEVYTDANW- 406
             DISFAVS          V HME V RIL+YLK DPGKGL+F+K  N SLEVYTDA+W 
Sbjct: 180 CLDISFAVSRVSQFLSNPSVTHMEAVDRILRYLKRDPGKGLMFKKTLNRSLEVYTDADWA 239

Query: 407 ---LDLLLTA-------------------IVSRSSAEVEFQSLVHGICEEIWLKHLITEL 466
              +D   T+                   +V+RSSAE EF++L  GICE IWLK L+ EL
Sbjct: 240 GSPIDRKSTSGYCSYVWGNLVTWRSKKQQVVARSSAEAEFRALAQGICEGIWLKRLLDEL 299

Query: 467 KVNVKGTIEV-------LSIARNLICHDRMKHVHIDCHFISEKIDSDTINLRYVPSNNK 486
           KV + G I++       ++IA+N I HDR KHV ID HFISEKI+S+ I+L++VPS ++
Sbjct: 300 KVGISGPIDMMCDNQSAIAIAKNPIHHDRTKHVEIDRHFISEKIESNAISLKHVPSRHQ 358

[Close]

BLAST of Cucsa.365560 vs. TrEMBL
Match: A5BS42_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002211 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.8e-52
Identity = 122/287 (42.51%), Postives = 164/287 (57.14%), Query Frame = 1


Query: 251  VKNAFLNGDPLEEVY---------MEIPHGFKIKYTTGKQDLANES---VSQWKYTLDLL 310
            V +  L+G+ +EE+           E+     +KY  G +   +     VSQ KY LDLL
Sbjct: 1289 VDDIILSGNDMEELQNLKKYLSEEFEVKDLGNLKYFLGMEVARSRKGIVVSQRKYILDLL 1348

Query: 311  NETGPSGCKPVDTPMNGNSKLGVNPKDEQVDQGRYQRLVGKLIYFTHTQPDISFAVSVV- 370
             ETG  GCKP+DTPM+   KLG+  +   VD+GRYQRLVG+LIY +HT+PDI FAVS V 
Sbjct: 1349 KETGMLGCKPIDTPMDSQKKLGIEKESTPVDRGRYQRLVGRLIYLSHTRPDIGFAVSAVS 1408

Query: 371  ---------HMEFVYRILQYLKHDPGKGLLFRKNTNNSLEVYTDANWLDLLLT------- 430
                     HME VYRIL+YLK  PGKGL FRK  N   EVY+DA+W   ++        
Sbjct: 1409 QFMHSPTEEHMEAVYRILRYLKMTPGKGLFFRKTENRDTEVYSDADWAGNIIDRXSTSGY 1468

Query: 431  ----------------AIVSRSSAEVEFQSLVHGICEEIWLKHLITELKVNVKGTI---- 486
                            ++V+RSSAE E+++L  GICE IW+K +++EL       I    
Sbjct: 1469 CSFVWGNLVTWRSKKQSVVARSSAEAEYRALAQGICEGIWIKRVLSELGQTSSSPILMMC 1528

[Close]

BLAST of Cucsa.365560 vs. TrEMBL
Match: A5BS42_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002211 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.5e-10
Identity = 43/126 (34.13%), Postives = 62/126 (49.21%), Query Frame = 1


Query: 16  IREDDWLGNTELCAVLYLLKT------MSPPPTMKHNSL-----------------IMML 75
           ++    +G+ ELC+ LYLL        +S    ++  S+                 I+ML
Sbjct: 694 LKSGKMIGSAELCSGLYLLSCGQFSNQVSQASCVQSQSMLESFNXVSNSKVNKDSEIIML 753

Query: 76  HYHLGHPNIPYFACLYPALFLIKSQF-FRCEVYQLLRHTRAQILPHTYSPSQPFSLIQGD 118
           HY LGHP+  Y   L+P LF+ K+   + CE+ Q  +HTR       Y PS  FSL+  D
Sbjct: 754 HYRLGHPSFVYLXKLFPKLFINKNPASYHCEICQFAKHTRTVYPQIPYKPSTVFSLVHSD 813

HSP 2 Score: 73.9 bits (180), Expect = 5.9e-10
Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 1


Query: 115 PSR--KFNTPLQSLLTLYP-TSHLVSPLLLKLFGCTGFMHLYSQHQIKLDAQSIKCTFLG 174
           PSR   F +P Q  L  +P T    S L LK+FGCT F+H+Y Q++ K   ++ KC FLG
Sbjct: 859 PSRVLTFQSPRQLFLKQFPHTXAASSDLPLKVFGCTXFVHVYPQNRSKFAPRANKCIFLG 918

Query: 175 YSPNKKGYKCYHPPTHLFF 191
           YSP +KGYKCY P    F+
Sbjct: 919 YSPTQKGYKCYSPTNKRFY 937

HSP 3 Score: 56.2 bits (134), Expect = 1.3e-04
Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 1


Query: 193  LGKGVRSCTQHHIQYHLSYNNLSPYFKAFMTSLDQIQIPKTVQEAYRAILNW 245
            L KGVR CT H I  ++ Y  LSP ++AF TSLD  Q+P T+QEA + I  W
Sbjct: 1089 LRKGVRRCTDHPIGNYVXYEGLSPSYRAFATSLDDTQVPNTIQEALK-ISEW 1139

HSP 4 Score: 45.8 bits (107), Expect = 1.7e-01
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 1


Query: 243  NWPPFQLEVKNAFLNGDPLEEVYMEIPHGFK 274
            +W   QL++KNAFLNGD  EEVYMEIP GF+
Sbjct: 1228 DWCLQQLDIKNAFLNGDLEEEVYMEIPPGFE 1258

HSP 5 Score: 213.0 bits (541), Expect = 8.1e-52
Identity = 121/287 (42.16%), Postives = 163/287 (56.79%), Query Frame = 1


Query: 251  VKNAFLNGDPLEEVY---------MEIPHGFKIKYTTGKQDLANES---VSQWKYTLDLL 310
            V +  L+G+ +EE+           E+     +KY  G +   +     VSQ KY LDLL
Sbjct: 1081 VDDIILSGNDMEELQNLKKYLSEEFEVKDLGNLKYFLGMEVARSRKGIVVSQRKYILDLL 1140

Query: 311  NETGPSGCKPVDTPMNGNSKLGVNPKDEQVDQGRYQRLVGKLIYFTHTQPDISFAVSVV- 370
             ETG  GCKP+DTPM+   KLG+  +   VD+GRYQRLVG+LIY +HT+PDI FAVS V 
Sbjct: 1141 KETGMLGCKPIDTPMDSQKKLGIEKESTPVDRGRYQRLVGRLIYLSHTRPDIGFAVSAVS 1200

Query: 371  ---------HMEFVYRILQYLKHDPGKGLLFRKNTNNSLEVYTDANWLDLLLT------- 430
                     HME VYRIL+YLK  PGKGL FRK  N   EVY+DA+W   ++        
Sbjct: 1201 QFMHSPTEEHMEAVYRILRYLKMTPGKGLFFRKTENRDTEVYSDADWAGNIIDRRSTSGY 1260

Query: 431  ----------------AIVSRSSAEVEFQSLVHGICEEIWLKHLITELKVNVKGTI---- 486
                            ++V+RSSAE E+++L  GICE IW+K +++EL       I    
Sbjct: 1261 CSFVWGNLVTWRSKKQSVVARSSAEAEYRALAQGICEGIWIKRVLSELGQTSSSPILMMC 1320

[Close]

BLAST of Cucsa.365560 vs. TrEMBL
Match: A5C9Q9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008809 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.0e-10
Identity = 44/126 (34.92%), Postives = 62/126 (49.21%), Query Frame = 1


Query: 16  IREDDWLGNTELCAVLYLLKT------MSPPPTMKHNSL-----------------IMML 75
           ++    +G+ ELC+ LYLL        +S    ++  S+                 I+ML
Sbjct: 445 LKSGKMIGSAELCSGLYLLSCGQFSNQVSQASCVQSQSMLESFNSVSNSKVNKDSEIIML 504

Query: 76  HYHLGHPNIPYFACLYPALFLIKSQF-FRCEVYQLLRHTRAQILPHTYSPSQPFSLIQGD 118
           HY LGHP   Y A L+P LF+ K+   + CE+ Q  +HTR       Y PS  FSL+  D
Sbjct: 505 HYRLGHPXFVYLAKLFPKLFINKNPASYHCEICQFAKHTRTVYPQIXYKPSTVFSLVHSD 564

HSP 2 Score: 74.7 bits (182), Expect = 3.4e-10
Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 1


Query: 115 PSR--KFNTPLQSLLTLYP-TSHLVSPLLLKLFGCTGFMHLYSQHQIKLDAQSIKCTFLG 174
           PSR   F +P Q  L  +P T    S L LK+FGCT F+H+Y Q++ K   ++ KC FLG
Sbjct: 702 PSRVLTFQSPRQLFLKQFPHTRAASSDLXLKVFGCTAFVHVYPQNRSKFAHRANKCIFLG 761

Query: 175 YSPNKKGYKCYHPPTHLFF 191
           YSP +KGYKCY P    F+
Sbjct: 762 YSPTQKGYKCYSPTNKRFY 780

HSP 3 Score: 57.0 bits (136), Expect = 7.4e-05
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 1


Query: 193 LGKGVRSCTQHHIQYHLSYNNLSPYFKAFMTSLDQIQIPKTVQEAYRAILNW 245
           L KGVR CT H I  +++Y  LSP ++AF TSLD  Q+P T+QEA + I  W
Sbjct: 881 LRKGVRRCTDHPIGNYVTYEGLSPSYRAFATSLDDTQVPNTIQEALK-ISEW 931

HSP 4 Score: 44.3 bits (103), Expect = 5.0e-01
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 1


Query: 243  NWPPFQLEVKNAFLNGDPLEEVYMEIPHGFK 274
            +W   QL++KN FLNGD  EEVYMEIP GF+
Sbjct: 1020 DWCLQQLDIKNVFLNGDLEEEVYMEIPPGFE 1050

HSP 5 Score: 212.6 bits (540), Expect = 1.1e-51
Identity = 113/238 (47.48%), Postives = 146/238 (61.34%), Query Frame = 1


Query: 288  VSQWKYTLDLLNETGPSGCKPVDTPMNGNSKLGVNPKDEQVDQGRYQRLVGKLIYFTHTQ 347
            VSQ KY LDLL ETG  GCKP+DTPM+   KLG+  +   VD+GRYQRLVG+LIY +HT+
Sbjct: 1201 VSQRKYILDLLKETGMLGCKPIDTPMDSKKKLGIEKESTPVDRGRYQRLVGRLIYLSHTR 1260

Query: 348  PDISFAVSVV----------HMEFVYRILQYLKHDPGKGLLFRKNTNNSLEVYTDANWLD 407
            PDI FAVS V          HME VYRIL+YLK  PGKGL FRK  N   EVY+DA+W  
Sbjct: 1261 PDIGFAVSAVSQFMHSPTEEHMEAVYRILRYLKMTPGKGLFFRKTENRDTEVYSDADWAG 1320

Query: 408  LLLT-----------------------AIVSRSSAEVEFQSLVHGICEEIWLKHLITELK 467
             ++                        ++V+RSSAE E+++L  GICE IW+K +++EL 
Sbjct: 1321 NIIDRRSTSGYCSFVWGNLVTWRSKKQSVVARSSAEAEYRALAQGICEGIWIKRVLSELG 1380

Query: 468  VNVKGTI-------EVLSIARNLICHDRMKHVHIDCHFISEKIDSDTINLRYVPSNNK 486
                  I         +SIA+N + HDR KHV ID HFI+EK+ S+T+ L YVP+ ++
Sbjct: 1381 QTSSSPILMMCDNQAAISIAKNPVHHDRTKHVEIDRHFITEKVTSETVKLNYVPTKHQ 1438

[Close]

BLAST of Cucsa.365560 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 114.4 bits (285), Expect = 2.0e-25
Identity = 79/262 (30.15%), Postives = 126/262 (48.09%), Query Frame = 1


Query: 257 NGDPLEEVYMEIPHGFKI------KYTTGKQ---DLANESVSQWKYTLDLLNETGPSGCK 316
           N   ++E+  ++   FK+      KY  G +     A  ++ Q KY LDLL+ETG  GCK
Sbjct: 293 NDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCK 352

Query: 317 PVDTPMNGNSKLGVNPKDEQVDQGRYQRLVGKLIYFTHTQPDISFAVS----------VV 376
           P   PM+ +     +   + VD   Y+RL+G+L+Y   T+ DISFAV+          + 
Sbjct: 353 PSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLA 412

Query: 377 HMEFVYRILQYLKHDPGKGLLFRKNTNNSLEVYTDANWLDLLLT---------------- 436
           H + V +IL Y+K   G+GL +       L+V++DA++     T                
Sbjct: 413 HQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLI 472

Query: 437 -------AIVSRSSAEVEFQSLVHGICEEIWLKHLITELKVNV-KGTI------EVLSIA 470
                   +VS+SSAE E+++L     E +WL     EL++ + K T+        + IA
Sbjct: 473 SWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIA 532

HSP 2 Score: 42.4 bits (98), Expect = 9.6e-04
Identity = 19/36 (52.78%), Postives = 26/36 (72.22%), Query Frame = 1


Query: 237 AYRAILNWPPFQLEVKNAFLNGDPLEEVYMEIPHGF 273
           A  AI N+   QL++ NAFLNGD  EE+YM++P G+
Sbjct: 181 AISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGY 216

[Close]

BLAST of Cucsa.365560 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 68.2 bits (165), Expect = 1.6e-11
Identity = 48/171 (28.07%), Postives = 76/171 (44.44%), Query Frame = 1


Query: 288 VSQWKYTLDLLNETGPSGCKPVDTPMNGNSKLGVNPKDEQVDQGRYQRLVGKLIYFTHTQ 347
           +SQ KY   +LN  G   CKP+ TP+       V+   +  D   ++ +VG L Y T T+
Sbjct: 56  LSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTA-KYPDPSDFRSIVGALQYLTLTR 115

Query: 348 PDISFAVSVV----------HMEFVYRILQYLKHDPGKGLLFRKNTNNSLEVYTDANWLD 407
           PDIS+AV++V            + + R+L+Y+K     GL   KN+  +++ + D++W  
Sbjct: 116 PDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAG 175

Query: 408 LLLT-----------------------AIVSRSSAEVEFQSLVHGICEEIW 426
              T                         VSRSS E E+++L     E  W
Sbjct: 176 CTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cucsa.365560 vs. NCBI nr
Match: gi|147782555|emb|CAN60008.1| (hypothetical protein VITISV_024743 [Vitis vinifera])

HSP 1 Score: 222.2 bits (565), Expect = 1.9e-54
Identity = 125/276 (45.29%), Postives = 167/276 (60.51%), Query Frame = 1


Query: 239  RAILNWPPFQLEVKNAFLNGDPLEEVY---------MEIPHGFKIKYTTGKQDLANES-- 298
            +A+L     Q+ V +  L+G+ +EE+           E+     +KY  G +   +    
Sbjct: 802  KAVLKLGYKQVYVDDIILSGNDMEELQNLKKYLSEEFEVKDLGNLKYFLGMEVARSRKGI 861

Query: 299  -VSQWKYTLDLLNETGPSGCKPVDTPMNGNSKLGVNPKDEQVDQGRYQRLVGKLIYFTHT 358
             VSQ KY LDLL ETG  GCKP+DTPM+   KLG+  +   VD+GRYQRLVG+LIY +HT
Sbjct: 862  VVSQRKYILDLLKETGMLGCKPIDTPMDSQKKLGIEKESTPVDKGRYQRLVGRLIYLSHT 921

Query: 359  QPDISFAVSVV----------HMEFVYRILQYLKHDPGKGLLFRKNTNNSLEVYTDANWL 418
            +PDI FAVS V          HME VYRIL+YLK  PGKGL FRK  N   EVY++A+W 
Sbjct: 922  RPDIGFAVSAVSQFMHSPTEEHMEAVYRILRYLKMAPGKGLFFRKTENRDTEVYSNADWA 981

Query: 419  DLLLTAIVSRSSAEVEFQSLVHGICEEIWLKHLITELKVNVKGTI-------EVLSIARN 478
               LT   +RSSAE E+++L  GICE IW+K +++EL       I         +SIA+N
Sbjct: 982  GTSLTG--ARSSAEAEYRALAQGICEGIWIKRVLSELGQTSSSPILMMCDNQAAISIAKN 1041

Query: 479  LICHDRMKHVHIDCHFISEKIDSDTINLRYVPSNNK 486
             + HDR KHV ID HFI+EK+ S+T+ L YVP+ ++
Sbjct: 1042 PVHHDRTKHVEIDRHFITEKVTSETVKLNYVPTKHQ 1075

[Close]

BLAST of Cucsa.365560 vs. NCBI nr
Match: gi|147782555|emb|CAN60008.1| (hypothetical protein VITISV_024743 [Vitis vinifera])

HSP 1 Score: 68.2 bits (165), Expect = 4.6e-08
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1


Query: 124 QSLLTLYPTSHLVSPLLL---KLFGCTGFMHLYSQHQIKLDAQSIKCTFLGYSPNKKGYK 183
           QS+L  + +     PLL+   K+FGCT F+H+Y Q++ K   ++ KC FLGYSP +KGYK
Sbjct: 381 QSMLESFNSVSNSKPLLIYHSKVFGCTTFVHVYPQNRSKFAPRANKCIFLGYSPTQKGYK 440

Query: 184 CYHPPTHLFF 191
           CY P    F+
Sbjct: 441 CYSPTNKRFY 450

HSP 2 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 1


Query: 193 LGKGVRSCTQHHIQYHLSYNNLSPYFKAFMTSLDQIQIPKTVQEAYRAILNW 245
           L KGVR C  H I  +++Y  LSP ++AF TSLD  Q+P T+QEA++ I  W
Sbjct: 602 LSKGVRRCXDHPIGNYVTYEGLSPSYRAFATSLDDTQVPNTIQEAFK-ISEW 652

HSP 3 Score: 45.8 bits (107), Expect = 2.5e-01
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 1


Query: 243 NWPPFQLEVKNAFLNGDPLEEVYMEIPHGFK 274
           +W   QL++KNAFLNGD  EEVYMEIP GF+
Sbjct: 741 DWCLQQLDIKNAFLNGDLEEEVYMEIPPGFE 771

HSP 4 Score: 218.8 bits (556), Expect = 2.1e-53
Identity = 125/239 (52.30%), Postives = 156/239 (65.27%), Query Frame = 1


Query: 287 SVSQWKYTLDLLNETGPSGCKPVDTPMNGNSKLGVNPKDEQVDQGRYQRLVGKLIYFTHT 346
           SVSQ KY LDLL ETG  GC+ VDTPM+ N+KL    ++  VD+G+YQRLVGKLIY TH 
Sbjct: 120 SVSQRKYVLDLLKETGMIGCRLVDTPMDPNTKLMPRTEEMAVDKGQYQRLVGKLIYLTHM 179

Query: 347 QPDISFAVS----------VVHMEFVYRILQYLKHDPGKGLLFRKNTNNSLEVYTDANW- 406
             DISFAVS          V HME V RIL+YLK DPGKGL+F+K  N SLEVYTDA+W 
Sbjct: 180 CLDISFAVSRVSQFLSNPSVTHMEAVDRILRYLKRDPGKGLMFKKTLNRSLEVYTDADWA 239

Query: 407 ---LDLLLTA-------------------IVSRSSAEVEFQSLVHGICEEIWLKHLITEL 466
              +D   T+                   +V+RSSAE EF++L  GICE IWLK L+ EL
Sbjct: 240 GSPIDRKSTSGYCSYVWGNLVTWRSKKQQVVARSSAEAEFRALAQGICEGIWLKRLLDEL 299

Query: 467 KVNVKGTIEV-------LSIARNLICHDRMKHVHIDCHFISEKIDSDTINLRYVPSNNK 486
           KV + G I++       ++IA+N I HDR KHV ID HFISEKI+S+ I+L++VPS ++
Sbjct: 300 KVGISGPIDMMCDNQSAIAIAKNPIHHDRTKHVEIDRHFISEKIESNAISLKHVPSRHQ 358

[Close]

BLAST of Cucsa.365560 vs. NCBI nr
Match: gi|147784156|emb|CAN77225.1| (hypothetical protein VITISV_002211 [Vitis vinifera])

HSP 1 Score: 214.5 bits (545), Expect = 4.0e-52
Identity = 122/287 (42.51%), Postives = 164/287 (57.14%), Query Frame = 1


Query: 251  VKNAFLNGDPLEEVY---------MEIPHGFKIKYTTGKQDLANES---VSQWKYTLDLL 310
            V +  L+G+ +EE+           E+     +KY  G +   +     VSQ KY LDLL
Sbjct: 1289 VDDIILSGNDMEELQNLKKYLSEEFEVKDLGNLKYFLGMEVARSRKGIVVSQRKYILDLL 1348

Query: 311  NETGPSGCKPVDTPMNGNSKLGVNPKDEQVDQGRYQRLVGKLIYFTHTQPDISFAVSVV- 370
             ETG  GCKP+DTPM+   KLG+  +   VD+GRYQRLVG+LIY +HT+PDI FAVS V 
Sbjct: 1349 KETGMLGCKPIDTPMDSQKKLGIEKESTPVDRGRYQRLVGRLIYLSHTRPDIGFAVSAVS 1408

Query: 371  ---------HMEFVYRILQYLKHDPGKGLLFRKNTNNSLEVYTDANWLDLLLT------- 430
                     HME VYRIL+YLK  PGKGL FRK  N   EVY+DA+W   ++        
Sbjct: 1409 QFMHSPTEEHMEAVYRILRYLKMTPGKGLFFRKTENRDTEVYSDADWAGNIIDRXSTSGY 1468

Query: 431  ----------------AIVSRSSAEVEFQSLVHGICEEIWLKHLITELKVNVKGTI---- 486
                            ++V+RSSAE E+++L  GICE IW+K +++EL       I    
Sbjct: 1469 CSFVWGNLVTWRSKKQSVVARSSAEAEYRALAQGICEGIWIKRVLSELGQTSSSPILMMC 1528

[Close]

BLAST of Cucsa.365560 vs. NCBI nr
Match: gi|147784156|emb|CAN77225.1| (hypothetical protein VITISV_002211 [Vitis vinifera])

HSP 1 Score: 74.3 bits (181), Expect = 6.4e-10
Identity = 43/126 (34.13%), Postives = 62/126 (49.21%), Query Frame = 1


Query: 16  IREDDWLGNTELCAVLYLLKT------MSPPPTMKHNSL-----------------IMML 75
           ++    +G+ ELC+ LYLL        +S    ++  S+                 I+ML
Sbjct: 694 LKSGKMIGSAELCSGLYLLSCGQFSNQVSQASCVQSQSMLESFNXVSNSKVNKDSEIIML 753

Query: 76  HYHLGHPNIPYFACLYPALFLIKSQF-FRCEVYQLLRHTRAQILPHTYSPSQPFSLIQGD 118
           HY LGHP+  Y   L+P LF+ K+   + CE+ Q  +HTR       Y PS  FSL+  D
Sbjct: 754 HYRLGHPSFVYLXKLFPKLFINKNPASYHCEICQFAKHTRTVYPQIPYKPSTVFSLVHSD 813

HSP 2 Score: 73.9 bits (180), Expect = 8.4e-10
Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 1


Query: 115 PSR--KFNTPLQSLLTLYP-TSHLVSPLLLKLFGCTGFMHLYSQHQIKLDAQSIKCTFLG 174
           PSR   F +P Q  L  +P T    S L LK+FGCT F+H+Y Q++ K   ++ KC FLG
Sbjct: 859 PSRVLTFQSPRQLFLKQFPHTXAASSDLPLKVFGCTXFVHVYPQNRSKFAPRANKCIFLG 918

Query: 175 YSPNKKGYKCYHPPTHLFF 191
           YSP +KGYKCY P    F+
Sbjct: 919 YSPTQKGYKCYSPTNKRFY 937

HSP 3 Score: 56.2 bits (134), Expect = 1.8e-04
Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 1


Query: 193  LGKGVRSCTQHHIQYHLSYNNLSPYFKAFMTSLDQIQIPKTVQEAYRAILNW 245
            L KGVR CT H I  ++ Y  LSP ++AF TSLD  Q+P T+QEA + I  W
Sbjct: 1089 LRKGVRRCTDHPIGNYVXYEGLSPSYRAFATSLDDTQVPNTIQEALK-ISEW 1139

HSP 4 Score: 45.8 bits (107), Expect = 2.5e-01
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 1


Query: 243  NWPPFQLEVKNAFLNGDPLEEVYMEIPHGFK 274
            +W   QL++KNAFLNGD  EEVYMEIP GF+
Sbjct: 1228 DWCLQQLDIKNAFLNGDLEEEVYMEIPPGFE 1258

HSP 5 Score: 213.0 bits (541), Expect = 1.2e-51
Identity = 121/287 (42.16%), Postives = 163/287 (56.79%), Query Frame = 1


Query: 251  VKNAFLNGDPLEEVY---------MEIPHGFKIKYTTGKQDLANES---VSQWKYTLDLL 310
            V +  L+G+ +EE+           E+     +KY  G +   +     VSQ KY LDLL
Sbjct: 1081 VDDIILSGNDMEELQNLKKYLSEEFEVKDLGNLKYFLGMEVARSRKGIVVSQRKYILDLL 1140

Query: 311  NETGPSGCKPVDTPMNGNSKLGVNPKDEQVDQGRYQRLVGKLIYFTHTQPDISFAVSVV- 370
             ETG  GCKP+DTPM+   KLG+  +   VD+GRYQRLVG+LIY +HT+PDI FAVS V 
Sbjct: 1141 KETGMLGCKPIDTPMDSQKKLGIEKESTPVDRGRYQRLVGRLIYLSHTRPDIGFAVSAVS 1200

Query: 371  ---------HMEFVYRILQYLKHDPGKGLLFRKNTNNSLEVYTDANWLDLLLT------- 430
                     HME VYRIL+YLK  PGKGL FRK  N   EVY+DA+W   ++        
Sbjct: 1201 QFMHSPTEEHMEAVYRILRYLKMTPGKGLFFRKTENRDTEVYSDADWAGNIIDRRSTSGY 1260

Query: 431  ----------------AIVSRSSAEVEFQSLVHGICEEIWLKHLITELKVNVKGTI---- 486
                            ++V+RSSAE E+++L  GICE IW+K +++EL       I    
Sbjct: 1261 CSFVWGNLVTWRSKKQSVVARSSAEAEYRALAQGICEGIWIKRVLSELGQTSSSPILMMC 1320

[Close]

BLAST of Cucsa.365560 vs. NCBI nr
Match: gi|147792850|emb|CAN68802.1| (hypothetical protein VITISV_008809 [Vitis vinifera])

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-10
Identity = 44/126 (34.92%), Postives = 62/126 (49.21%), Query Frame = 1


Query: 16  IREDDWLGNTELCAVLYLLKT------MSPPPTMKHNSL-----------------IMML 75
           ++    +G+ ELC+ LYLL        +S    ++  S+                 I+ML
Sbjct: 445 LKSGKMIGSAELCSGLYLLSCGQFSNQVSQASCVQSQSMLESFNSVSNSKVNKDSEIIML 504

Query: 76  HYHLGHPNIPYFACLYPALFLIKSQF-FRCEVYQLLRHTRAQILPHTYSPSQPFSLIQGD 118
           HY LGHP   Y A L+P LF+ K+   + CE+ Q  +HTR       Y PS  FSL+  D
Sbjct: 505 HYRLGHPXFVYLAKLFPKLFINKNPASYHCEICQFAKHTRTVYPQIXYKPSTVFSLVHSD 564

HSP 2 Score: 74.7 bits (182), Expect = 4.9e-10
Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 1


Query: 115 PSR--KFNTPLQSLLTLYP-TSHLVSPLLLKLFGCTGFMHLYSQHQIKLDAQSIKCTFLG 174
           PSR   F +P Q  L  +P T    S L LK+FGCT F+H+Y Q++ K   ++ KC FLG
Sbjct: 702 PSRVLTFQSPRQLFLKQFPHTRAASSDLXLKVFGCTAFVHVYPQNRSKFAHRANKCIFLG 761

Query: 175 YSPNKKGYKCYHPPTHLFF 191
           YSP +KGYKCY P    F+
Sbjct: 762 YSPTQKGYKCYSPTNKRFY 780

HSP 3 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 1


Query: 193 LGKGVRSCTQHHIQYHLSYNNLSPYFKAFMTSLDQIQIPKTVQEAYRAILNW 245
           L KGVR CT H I  +++Y  LSP ++AF TSLD  Q+P T+QEA + I  W
Sbjct: 881 LRKGVRRCTDHPIGNYVTYEGLSPSYRAFATSLDDTQVPNTIQEALK-ISEW 931

HSP 4 Score: 44.3 bits (103), Expect = 7.1e-01
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 1


Query: 243  NWPPFQLEVKNAFLNGDPLEEVYMEIPHGFK 274
            +W   QL++KN FLNGD  EEVYMEIP GF+
Sbjct: 1020 DWCLQQLDIKNVFLNGDLEEEVYMEIPPGFE 1050

HSP 5 Score: 212.6 bits (540), Expect = 1.5e-51
Identity = 113/238 (47.48%), Postives = 146/238 (61.34%), Query Frame = 1


Query: 288  VSQWKYTLDLLNETGPSGCKPVDTPMNGNSKLGVNPKDEQVDQGRYQRLVGKLIYFTHTQ 347
            VSQ KY LDLL ETG  GCKP+DTPM+   KLG+  +   VD+GRYQRLVG+LIY +HT+
Sbjct: 1201 VSQRKYILDLLKETGMLGCKPIDTPMDSKKKLGIEKESTPVDRGRYQRLVGRLIYLSHTR 1260

Query: 348  PDISFAVSVV----------HMEFVYRILQYLKHDPGKGLLFRKNTNNSLEVYTDANWLD 407
            PDI FAVS V          HME VYRIL+YLK  PGKGL FRK  N   EVY+DA+W  
Sbjct: 1261 PDIGFAVSAVSQFMHSPTEEHMEAVYRILRYLKMTPGKGLFFRKTENRDTEVYSDADWAG 1320

Query: 408  LLLT-----------------------AIVSRSSAEVEFQSLVHGICEEIWLKHLITELK 467
             ++                        ++V+RSSAE E+++L  GICE IW+K +++EL 
Sbjct: 1321 NIIDRRSTSGYCSFVWGNLVTWRSKKQSVVARSSAEAEYRALAQGICEGIWIKRVLSELG 1380

Query: 468  VNVKGTI-------EVLSIARNLICHDRMKHVHIDCHFISEKIDSDTINLRYVPSNNK 486
                  I         +SIA+N + HDR KHV ID HFI+EK+ S+T+ L YVP+ ++
Sbjct: 1381 QTSSSPILMMCDNQAAISIAKNPVHHDRTKHVEIDRHFITEKVTSETVKLNYVPTKHQ 1438

The following BLAST results are available for this feature:

BLAST of Cucsa.365560 vs. Swiss-Prot


Match Name	E-value	Identity	Description
COPIA_DROME	1.6e-16	26.86	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
M810_ARATH	2.9e-10	28.07	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0...	[more]

BLAST of Cucsa.365560 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BUX6_VITVI	1.3e-54	45.29	Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_024743 P...	[more]
A5BUX6_VITVI	3.2e-08	45.71	Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_024743 P...	[more]
A5BS42_VITVI	2.8e-52	42.51	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002211 PE=4 SV=1	[more]
A5BS42_VITVI	4.5e-10	34.13	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002211 PE=4 SV=1	[more]
A5C9Q9_VITVI	2.0e-10	34.92	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008809 PE=4 SV=1	[more]

BLAST of Cucsa.365560 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	2.0e-25	30.15	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.6e-11	28.07	ATMG00810.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of Cucsa.365560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147782555\|emb\|CAN60008.1\|	1.9e-54	45.29	hypothetical protein VITISV_024743 [Vitis vinifera]	[more]
gi\|147782555\|emb\|CAN60008.1\|	4.6e-08	45.71	hypothetical protein VITISV_024743 [Vitis vinifera]	[more]
gi\|147784156\|emb\|CAN77225.1\|	4.0e-52	42.51	hypothetical protein VITISV_002211 [Vitis vinifera]	[more]
gi\|147784156\|emb\|CAN77225.1\|	6.4e-10	34.13	hypothetical protein VITISV_002211 [Vitis vinifera]	[more]
gi\|147792850\|emb\|CAN68802.1\|	2.9e-10	34.92	hypothetical protein VITISV_008809 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.365560.1	Cucsa.365560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 241..279 score: 4.
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 226..440 score: 5.3E-59coord: 141..210 score: 5.3
None	No IPR available	PANTHER	PTHR11439:SF185	SUBFAMILY NOT NAMED	coord: 226..440 score: 5.3E-59coord: 141..210 score: 5.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.365560	Cucurbita maxima (Rimu)	cgycmaB1002
Cucsa.365560	Cucurbita maxima (Rimu)	cgycmaB1010
Cucsa.365560	Cucurbita moschata (Rifu)	cgycmoB1010
Cucsa.365560	Wild cucumber (PI 183967)	cgycpiB540
Cucsa.365560	Cucumber (Chinese Long) v2	cgycuB511
Cucsa.365560	Melon (DHL92) v3.5.1	cgymeB589
Cucsa.365560	Watermelon (Charleston Gray)	cgywcgB628
Cucsa.365560	Watermelon (97103) v1	cgywmB657
Cucsa.365560	Cucurbita pepo (Zucchini)	cgycpeB0950
Cucsa.365560	Cucurbita pepo (Zucchini)	cgycpeB0958
Cucsa.365560	Bottle gourd (USVL1VR-Ls)	cgylsiB592
Cucsa.365560	Melon (DHL92) v3.6.1	cgymedB588
Cucsa.365560	Silver-seed gourd	carcgyB0101
Cucsa.365560	Silver-seed gourd	carcgyB0264
Cucsa.365560	Cucumber (Chinese Long) v3	cgycucB556
Cucsa.365560	Watermelon (97103) v2	cgywmbB633
Cucsa.365560	Wax gourd	cgywgoB737