Cucsa.365530 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.365530
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionATP-dependent helicase/nuclease subunit A
Locationscaffold03611 : 3360671 .. 3362120 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGTCTTTGGCTCCAACAAGGCAGTTTGTGAAAAGTGATGAGATGAATTCTTCCTCATCAAAGCACTTAGTAGAAATTAGCAGCCAATGTTCTAGGAAGAGGAAGCTTCTTCTACATGATCATCATCACTTTATTAAGTCTCAAACAAGTGTTGATCTTCAACTCAAAGATCCTCTTCCTCTTCATTGGGAGCAATGTCTTGATCTTCAGGTCTCTCTCTCACTGTTATCTTTTCTTAAATTCTGTATTTTTAGAATATGAAATGACAATTCTGATCCATAAGGTTATTAACATCTTTATGCTAAAGTAAGCATACCAACAAAGAGTTTTTGTACTTCCAAATCCACTTTTCTTTGTTATACTAAACAAAGTTACTGATGTCTTAACAGTAAAGCGTTAGGGTTTATGCTCATGATGTTTTACTTTTTAAACTTTACTAAATTATTAAAGTCGTGTTAAATTCTCTTTGTTAGTGTTAAAATAACTCAATATTACAATTGTTGTACTAAAAAAAAAATTCTCCTCAGTTAGCCATCTTTCTTATGAAAAACACTTACAATATATAGTATAAGTGTGAAAATAGGGGATTAAATTCAAATTAAACTTTCACTCTAAGAAATAAAGTTTCAATGTGGCTTTATTTGCTTTATTTACTTCTACAAAAGAATTTTAGGAGTGAAATTATGAAATCTTGTCCTTGCAAAAAAAGACGGTTCGCTTTAACAGTTGAGCTATATTTATGTTGTGATTATACTCTCAAACTGTGAAAACTATGCTCCAATTGGATTAATTAACCTAACATTTTAAAGTCTGTCTTCATCATTCTAACAAATTTGTAATCTTATTTATGTGCGAAAAAATTGCTATACGTGTCAATATATATATGTTATGATAGGTACTGATAGTATTTTATCACAATCCATCATAGATAGATTATGATATTTTAAGATATTTATAAATATTTTTAGCAATTTTCTGATTTAAAATGATTTTTCATACCTATATAATTTTCTCAATGTATATTGTATATGATAGTTTAGACCATTACTATATAGCTATATATATAATATTTGGGGGTTAGCTAGTGCAGTCAGGGAAAATGTACTATCTAAACAGAAAAACATTAAGGAAGAGTTGGAATTGGCCAAAAGATCAAGATCATCATCAACAACATCATCACCAAAAGCTAGACTTGGCGTTGGAACTCAACAACATTAATTCTCCATCATCAAAAGCTGATAATTTGATGAATTTTGGACATGAACATGGAAATTATTCTTTTTCAGAAAGTAGCAACATGGTGGCTTTGCCTTGTCTCAATTGCCACCTTCTTGTTATTCTCTCAAAGTCTTCTCCATCTTGTCCTAATTGCAAGCATTTTCATACCCTTTTTCCAAATTGCCCTTCTTCACCCAGCTCCCCTCCTAATACCTTGCCACTCTTGAACTAG

mRNA sequence

TTGTCTTTGGCTCCAACAAGGCAGTTTGTGAAAAGTGATGAGATGAATTCTTCCTCATCAAAGCACTTAGTAGAAATTAGCAGCCAATGTTCTAGGAAGAGGAAGCTTCTTCTACATGATCATCATCACTTTATTAAGTCTCAAACAAGTGTTGATCTTCAACTCAAAGATCCTCTTCCTCTTCATTGGGAGCAATGTCTTGATCTTCAGTCAGGGAAAATGTACTATCTAAACAGAAAAACATTAAGGAAGAGTTGGAATTGGCCAAAAGATCAAGATCATCATCAACAACATCATCACCAAAAGCTAGACTTGGCGTTGGAACTCAACAACATTAATTCTCCATCATCAAAAGCTGATAATTTGATGAATTTTGGACATGAACATGGAAATTATTCTTTTTCAGAAAGTAGCAACATGGTGGCTTTGCCTTGTCTCAATTGCCACCTTCTTGTTATTCTCTCAAAGTCTTCTCCATCTTGTCCTAATTGCAAGCATTTTCATACCCTTTTTCCAAATTGCCCTTCTTCACCCAGCTCCCCTCCTAATACCTTGCCACTCTTGAACTAG

Coding sequence (CDS)

TTGTCTTTGGCTCCAACAAGGCAGTTTGTGAAAAGTGATGAGATGAATTCTTCCTCATCAAAGCACTTAGTAGAAATTAGCAGCCAATGTTCTAGGAAGAGGAAGCTTCTTCTACATGATCATCATCACTTTATTAAGTCTCAAACAAGTGTTGATCTTCAACTCAAAGATCCTCTTCCTCTTCATTGGGAGCAATGTCTTGATCTTCAGTCAGGGAAAATGTACTATCTAAACAGAAAAACATTAAGGAAGAGTTGGAATTGGCCAAAAGATCAAGATCATCATCAACAACATCATCACCAAAAGCTAGACTTGGCGTTGGAACTCAACAACATTAATTCTCCATCATCAAAAGCTGATAATTTGATGAATTTTGGACATGAACATGGAAATTATTCTTTTTCAGAAAGTAGCAACATGGTGGCTTTGCCTTGTCTCAATTGCCACCTTCTTGTTATTCTCTCAAAGTCTTCTCCATCTTGTCCTAATTGCAAGCATTTTCATACCCTTTTTCCAAATTGCCCTTCTTCACCCAGCTCCCCTCCTAATACCTTGCCACTCTTGAACTAG

Protein sequence

LSLAPTRQFVKSDEMNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKSQTSVDLQLKDPLPLHWEQCLDLQSGKMYYLNRKTLRKSWNWPKDQDHHQQHHHQKLDLALELNNINSPSSKADNLMNFGHEHGNYSFSESSNMVALPCLNCHLLVILSKSSPSCPNCKHFHTLFPNCPSSPSSPPNTLPLLN*
Homology
[Close]
BLAST of Cucsa.365530 vs. TrEMBL
Match: A0A0A0K842_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G023890 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 2.2e-109
Identity = 188/189 (99.47%), Postives = 189/189 (100.00%), Query Frame = 1 

Query: 1   LSLAPTRQFVKSDEMNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKSQTSVDLQLKDPLP 60
           LSLAPTRQFVKSDEMNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKSQTSVDLQLKDPLP
Sbjct: 9   LSLAPTRQFVKSDEMNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKSQTSVDLQLKDPLP 68

Query: 61  LHWEQCLDLQSGKMYYLNRKTLRKSWNWPKDQDHHQQHHHQKLDLALELNNINSPSSKAD 120
           LHWEQCLDLQSGKMYYLNRKTLRKSWNWPKDQDHHQQHHHQKLDLALELNNINSPSSKAD
Sbjct: 69  LHWEQCLDLQSGKMYYLNRKTLRKSWNWPKDQDHHQQHHHQKLDLALELNNINSPSSKAD 128

Query: 121 NLMNFGHEHGNYSFSESSNMVALPCLNCHLLVILSKSSPSCPNCKHFHTLFPNCPSSPSS 180
           NLMNFGHEHGNYSFSESSNMVALPCLNCHLLVILSKSSPSCPNCKHFHTLFPNCPSSP+S
Sbjct: 129 NLMNFGHEHGNYSFSESSNMVALPCLNCHLLVILSKSSPSCPNCKHFHTLFPNCPSSPNS 188

Query: 181 PPNTLPLLN 190
           PPNTLPLLN
Sbjct: 189 PPNTLPLLN 197

[Close]
BLAST of Cucsa.365530 vs. TrEMBL
Match: D7U8U2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0124g00100 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.6e-40
Identity = 107/200 (53.50%), Postives = 124/200 (62.00%), Query Frame = 1 

Query: 1   LSLAPTRQFVKSDEMNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKS----QTSVDLQLK 60
           LSLAP+ +       NSSSS+     ++  S+KRK      H F +S    QTSVDLQLK
Sbjct: 33  LSLAPSPRHGVDKSTNSSSSE---SEANYPSKKRKF---SDHLFNRSDPMIQTSVDLQLK 92

Query: 61  DPLPLHWEQCLDLQSGKMYYLNRKTLRKSWNWPKDQDHHQQHHHQKLDLALE---LNNIN 120
           DPLPL WEQCLDL+SG+MYYLNRKTLRKSWN PKD      H+ QKLDL L    L+N  
Sbjct: 93  DPLPLDWEQCLDLESGRMYYLNRKTLRKSWNCPKD------HNQQKLDLELNISTLSNCP 152

Query: 121 SPSSKADNLMNFGHEHGNYSFSESSNMVALPCLNCHLLVILSKSSPSCPNCKHFHTL--- 180
              S  D+     H   +   S SSNMVAL CLNCHLLVILSKSSPSCPNCK+ H+L   
Sbjct: 153 EKCSSFDSQRLQDHSKKHQHCSSSSNMVALACLNCHLLVILSKSSPSCPNCKYVHSLPTQ 212

Query: 181 -FPNCPSSPSSPPNTLPLLN 190
             P   + P    +TL LLN
Sbjct: 213 QIPTSKAPPIKSLDTLSLLN 220

[Close]
BLAST of Cucsa.365530 vs. TrEMBL
Match: B9IAD6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s14900g PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.1e-39
Identity = 104/200 (52.00%), Postives = 123/200 (61.50%), Query Frame = 1 

Query: 1   LSLAPTRQFVKSDEMNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKS----QTSVDLQLK 60
           LSLAP  QFV     NSSSS    E  +  SRKRK    D +  +K+    Q SVDL +K
Sbjct: 6   LSLAPA-QFVLEKSRNSSSSS---ESENTPSRKRKFF-SDQYQLLKNGPPIQASVDLHVK 65

Query: 61  DPLPLHWEQCLDLQSGKMYYLNRKTLRKSWNWPKDQDHHQQHHHQKLDLALELNNI--NS 120
           DPLPL WEQCLDL+SG+MYYLNRKTLRKSWNWPK          QKLDL L +++   N 
Sbjct: 66  DPLPLDWEQCLDLESGRMYYLNRKTLRKSWNWPK---------KQKLDLELNMSSTIPNC 125

Query: 121 PSSKADNLMNFGHEHGNYSFSESSNMVALPCLNCHLLVILSKSSPSCPNCKHFHTLFPNC 180
           P   + +  +    +     S +SNMVAL CLNCHLLVI SKSSPSCPNCK+ H+ FP  
Sbjct: 126 PDECSSSNSSLEDSNNKNHASSNSNMVALACLNCHLLVIFSKSSPSCPNCKYVHS-FPTL 185

Query: 181 PS-----SPSSPPNTLPLLN 190
            S     SP+   +TL LLN
Sbjct: 186 QSPQRKVSPTRSLSTLSLLN 190

[Close]
BLAST of Cucsa.365530 vs. TrEMBL
Match: A0A0B0MGB8_GOSAR (ATP-dependent helicase/nuclease subunit A OS=Gossypium arboreum GN=F383_18265 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.8e-38
Identity = 101/201 (50.25%), Postives = 123/201 (61.19%), Query Frame = 1 

Query: 1   LSLAPTRQFVKSDEMNSSSSK----HLVEISSQCSRKRKLLLHDHHHFIKSQ--TSVDLQ 60
           LSLA ++        N S S     H V+  +  S+KRKL   D    + SQ  TSVDLQ
Sbjct: 6   LSLASSQCVSADKTCNFSPSSDFHHHQVDGFNFPSKKRKLF-SDQFFNVDSQFQTSVDLQ 65

Query: 61  LKDPLPLHWEQCLDLQSGKMYYLNRKTLRKSWNWPKDQDHHQQHHHQKLDLALELNNINS 120
           +KDPLPL WEQCLDL+SGKMYY+NRKTL K+WNWPKD          KLDL L ++  +S
Sbjct: 66  VKDPLPLDWEQCLDLESGKMYYMNRKTLEKTWNWPKD---------HKLDLELNISPTSS 125

Query: 121 PSSKADNLMNFGHEHGNYS------FSESSNMVALPCLNCHLLVILSKSSPSCPNCKHFH 180
              +  N  +   E  N +      FS ++NMVALPCLNCHLLVIL KSSP+CPNCK+ H
Sbjct: 126 NGLEHFNGSSISSEDSNNNNKQQQHFSSTTNMVALPCLNCHLLVILPKSSPACPNCKYVH 185

Query: 181 TLFPNCPSSPSSPPNTLPLLN 190
           + FP     P+  PNTL LLN
Sbjct: 186 S-FPTL--QPTKCPNTLSLLN 193

[Close]
BLAST of Cucsa.365530 vs. TrEMBL
Match: A0A061EJ78_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_020072 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.3e-37
Identity = 99/199 (49.75%), Postives = 123/199 (61.81%), Query Frame = 1 

Query: 1   LSLAPTRQFVKSDEMNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKSQ--TSVDLQLKDP 60
           LSLAP  QF+     +SSSS    +       K++ L  DH     SQ  TSVDLQ+KDP
Sbjct: 9   LSLAPN-QFLADKSCHSSSSD---QADFNIPSKKRKLFPDHLLSAGSQFQTSVDLQVKDP 68

Query: 61  LPLHWEQCLDLQSGKMYYLNRKTLRKSWNWPKDQDHHQQHHHQKLDLALELNNINSPSSK 120
           LPL WEQCLDL+SGKMYYLNRKTL+++WNWPKD         QKLDL L ++  ++ S +
Sbjct: 69  LPLDWEQCLDLESGKMYYLNRKTLQRTWNWPKD---------QKLDLELNISQKSNCSEQ 128

Query: 121 ADNLMNFGHEHGNYSFSESSNMVALPCLNCHLLVILSKSSPSCPNCKHFHTLFPNCPSSP 180
               ++   E  N   S  +NMVAL CLNCHLLVILSKSSP+CPNCK+ H+L    P+  
Sbjct: 129 CSASVSL--EDSNKQHSTGTNMVALACLNCHLLVILSKSSPACPNCKYVHSL----PTLK 188

Query: 181 SSPP--------NTLPLLN 190
           + PP        +TL LLN
Sbjct: 189 AQPPKVTAIKSLDTLSLLN 188

[Close]
BLAST of Cucsa.365530 vs. TAIR10
Match: AT4G08910.1 (AT4G08910.1 unknown protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.8e-06
Identity = 48/177 (27.12%), Postives = 76/177 (42.94%), Query Frame = 1 

Query: 7   RQFVKSDEMNSSSSKHLVEISSQCSRKRKLLLHD-------------HHHFIKSQTSVDL 66
           ++F+ +DE+   S +    I S    KR+    D             HHH      S+DL
Sbjct: 37  QEFLANDEIFKRSDESQNLIVSPFDHKRRRFNEDSKNMNNNIEEGYNHHHM-----SLDL 96

Query: 67  QLKDPLPLHWEQCLDLQSGKMYYLNRKTLRKSWNWPKDQDHHQQHHHQKLDLALELNNIN 126
           +L               S  +  LN      ++N   ++D  ++   +K  + L L    
Sbjct: 97  ELN-------------LSPSLIDLNHHHDLSNYNKGYEEDERKKKMMEKGSV-LGLETKK 156

Query: 127 SPSSKADNLMNFGHEHGNYSFSESSN-MVALPCLNCHLLVILSKSSPSCPNCKHFHT 170
           S S  A +L +   + G+     S   MVA  C+ CH+LV+L K+SP+CPNCK  H+
Sbjct: 157 SMSRVAFDLDDDCCDRGDGVGGRSEEEMVARVCMKCHMLVMLCKASPACPNCKFMHS 194

[Close]
BLAST of Cucsa.365530 vs. NCBI nr
Match: gi|778710043|ref|XP_011656508.1| (PREDICTED: uncharacterized protein LOC105435750 isoform X2 [Cucumis sativus])

HSP 1 Score: 402.9 bits (1034), Expect = 3.1e-109
Identity = 188/189 (99.47%), Postives = 189/189 (100.00%), Query Frame = 1 

Query: 1   LSLAPTRQFVKSDEMNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKSQTSVDLQLKDPLP 60
           LSLAPTRQFVKSDEMNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKSQTSVDLQLKDPLP
Sbjct: 9   LSLAPTRQFVKSDEMNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKSQTSVDLQLKDPLP 68

Query: 61  LHWEQCLDLQSGKMYYLNRKTLRKSWNWPKDQDHHQQHHHQKLDLALELNNINSPSSKAD 120
           LHWEQCLDLQSGKMYYLNRKTLRKSWNWPKDQDHHQQHHHQKLDLALELNNINSPSSKAD
Sbjct: 69  LHWEQCLDLQSGKMYYLNRKTLRKSWNWPKDQDHHQQHHHQKLDLALELNNINSPSSKAD 128

Query: 121 NLMNFGHEHGNYSFSESSNMVALPCLNCHLLVILSKSSPSCPNCKHFHTLFPNCPSSPSS 180
           NLMNFGHEHGNYSFSESSNMVALPCLNCHLLVILSKSSPSCPNCKHFHTLFPNCPSSP+S
Sbjct: 129 NLMNFGHEHGNYSFSESSNMVALPCLNCHLLVILSKSSPSCPNCKHFHTLFPNCPSSPNS 188

Query: 181 PPNTLPLLN 190
           PPNTLPLLN
Sbjct: 189 PPNTLPLLN 197

[Close]
BLAST of Cucsa.365530 vs. NCBI nr
Match: gi|778710039|ref|XP_011656507.1| (PREDICTED: uncharacterized protein LOC105435750 isoform X1 [Cucumis sativus])

HSP 1 Score: 397.5 bits (1020), Expect = 1.3e-107
Identity = 188/192 (97.92%), Postives = 189/192 (98.44%), Query Frame = 1 

Query: 1   LSLAPTRQFVKSDEMNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKSQTSVDLQLKDPLP 60
           LSLAPTRQFVKSDEMNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKSQTSVDLQLKDPLP
Sbjct: 9   LSLAPTRQFVKSDEMNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKSQTSVDLQLKDPLP 68

Query: 61  LHWEQCLDLQ---SGKMYYLNRKTLRKSWNWPKDQDHHQQHHHQKLDLALELNNINSPSS 120
           LHWEQCLDLQ   SGKMYYLNRKTLRKSWNWPKDQDHHQQHHHQKLDLALELNNINSPSS
Sbjct: 69  LHWEQCLDLQLVQSGKMYYLNRKTLRKSWNWPKDQDHHQQHHHQKLDLALELNNINSPSS 128

Query: 121 KADNLMNFGHEHGNYSFSESSNMVALPCLNCHLLVILSKSSPSCPNCKHFHTLFPNCPSS 180
           KADNLMNFGHEHGNYSFSESSNMVALPCLNCHLLVILSKSSPSCPNCKHFHTLFPNCPSS
Sbjct: 129 KADNLMNFGHEHGNYSFSESSNMVALPCLNCHLLVILSKSSPSCPNCKHFHTLFPNCPSS 188

Query: 181 PSSPPNTLPLLN 190
           P+SPPNTLPLLN
Sbjct: 189 PNSPPNTLPLLN 200

[Close]
BLAST of Cucsa.365530 vs. NCBI nr
Match: gi|225433764|ref|XP_002271254.1| (PREDICTED: uncharacterized protein LOC100251518 [Vitis vinifera])

HSP 1 Score: 174.1 bits (440), Expect = 2.3e-40
Identity = 107/200 (53.50%), Postives = 124/200 (62.00%), Query Frame = 1 

Query: 1   LSLAPTRQFVKSDEMNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKS----QTSVDLQLK 60
           LSLAP+ +       NSSSS+     ++  S+KRK      H F +S    QTSVDLQLK
Sbjct: 33  LSLAPSPRHGVDKSTNSSSSE---SEANYPSKKRKF---SDHLFNRSDPMIQTSVDLQLK 92

Query: 61  DPLPLHWEQCLDLQSGKMYYLNRKTLRKSWNWPKDQDHHQQHHHQKLDLALE---LNNIN 120
           DPLPL WEQCLDL+SG+MYYLNRKTLRKSWN PKD      H+ QKLDL L    L+N  
Sbjct: 93  DPLPLDWEQCLDLESGRMYYLNRKTLRKSWNCPKD------HNQQKLDLELNISTLSNCP 152

Query: 121 SPSSKADNLMNFGHEHGNYSFSESSNMVALPCLNCHLLVILSKSSPSCPNCKHFHTL--- 180
              S  D+     H   +   S SSNMVAL CLNCHLLVILSKSSPSCPNCK+ H+L   
Sbjct: 153 EKCSSFDSQRLQDHSKKHQHCSSSSNMVALACLNCHLLVILSKSSPSCPNCKYVHSLPTQ 212

Query: 181 -FPNCPSSPSSPPNTLPLLN 190
             P   + P    +TL LLN
Sbjct: 213 QIPTSKAPPIKSLDTLSLLN 220

[Close]
BLAST of Cucsa.365530 vs. NCBI nr
Match: gi|743912224|ref|XP_010999984.1| (PREDICTED: uncharacterized protein LOC105107671 [Populus euphratica])

HSP 1 Score: 171.4 bits (433), Expect = 1.5e-39
Identity = 104/200 (52.00%), Postives = 124/200 (62.00%), Query Frame = 1 

Query: 1   LSLAPTRQFVKSDEMNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKS----QTSVDLQLK 60
           LSLAP  QFV     NSSSS    E  +  SRKRK    D +  +K+    Q SVDL +K
Sbjct: 6   LSLAPA-QFVLEKSRNSSSSS---ESENTSSRKRKFF-SDQYQLLKNGPPIQASVDLHVK 65

Query: 61  DPLPLHWEQCLDLQSGKMYYLNRKTLRKSWNWPKDQDHHQQHHHQKLDLALELNNI--NS 120
           DPLPL WEQCLDL+SG+MYYLNRKTLRKSWNWPK         +QKLDL L +++   N 
Sbjct: 66  DPLPLDWEQCLDLESGRMYYLNRKTLRKSWNWPK---------NQKLDLELNMSSTIPNC 125

Query: 121 PSSKADNLMNFGHEHGNYSFSESSNMVALPCLNCHLLVILSKSSPSCPNCKHFHTLFPNC 180
           P   + +  +    +     S +SNMVAL CLNCHLLVI SKSSPSCPNCK+ H+ FP  
Sbjct: 126 PDECSSSNSSLEDSNNKNHASSNSNMVALACLNCHLLVIFSKSSPSCPNCKYVHS-FPTL 185

Query: 181 PS-----SPSSPPNTLPLLN 190
            S     SP+   +TL LLN
Sbjct: 186 QSPQPKVSPTRSLSTLSLLN 190

[Close]
BLAST of Cucsa.365530 vs. NCBI nr
Match: gi|224131566|ref|XP_002321117.1| (hypothetical protein POPTR_0014s14900g [Populus trichocarpa])

HSP 1 Score: 169.9 bits (429), Expect = 4.4e-39
Identity = 104/200 (52.00%), Postives = 123/200 (61.50%), Query Frame = 1 

Query: 1   LSLAPTRQFVKSDEMNSSSSKHLVEISSQCSRKRKLLLHDHHHFIKS----QTSVDLQLK 60
           LSLAP  QFV     NSSSS    E  +  SRKRK    D +  +K+    Q SVDL +K
Sbjct: 6   LSLAPA-QFVLEKSRNSSSSS---ESENTPSRKRKFF-SDQYQLLKNGPPIQASVDLHVK 65

Query: 61  DPLPLHWEQCLDLQSGKMYYLNRKTLRKSWNWPKDQDHHQQHHHQKLDLALELNNI--NS 120
           DPLPL WEQCLDL+SG+MYYLNRKTLRKSWNWPK          QKLDL L +++   N 
Sbjct: 66  DPLPLDWEQCLDLESGRMYYLNRKTLRKSWNWPK---------KQKLDLELNMSSTIPNC 125

Query: 121 PSSKADNLMNFGHEHGNYSFSESSNMVALPCLNCHLLVILSKSSPSCPNCKHFHTLFPNC 180
           P   + +  +    +     S +SNMVAL CLNCHLLVI SKSSPSCPNCK+ H+ FP  
Sbjct: 126 PDECSSSNSSLEDSNNKNHASSNSNMVALACLNCHLLVIFSKSSPSCPNCKYVHS-FPTL 185

Query: 181 PS-----SPSSPPNTLPLLN 190
            S     SP+   +TL LLN
Sbjct: 186 QSPQRKVSPTRSLSTLSLLN 190

The following BLAST results are available for this feature:
BLAST of Cucsa.365530 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K842_CUCSA2.2e-10999.47Uncharacterized protein OS=Cucumis sativus GN=Csa_6G023890 PE=4 SV=1[more]
D7U8U2_VITVI1.6e-4053.50Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0124g00100 PE=4 SV=... [more]
B9IAD6_POPTR3.1e-3952.00Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s14900g PE=4 SV=1[more]
A0A0B0MGB8_GOSAR5.8e-3850.25ATP-dependent helicase/nuclease subunit A OS=Gossypium arboreum GN=F383_18265 PE... [more]
A0A061EJ78_THECC1.3e-3749.75Uncharacterized protein OS=Theobroma cacao GN=TCM_020072 PE=4 SV=1[more]
BLAST of Cucsa.365530 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G08910.11.8e-0627.12 unknown protein[more]
BLAST of Cucsa.365530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778710043|ref|XP_011656508.1|3.1e-10999.47PREDICTED: uncharacterized protein LOC105435750 isoform X2 [Cucumis sativus][more]
gi|778710039|ref|XP_011656507.1|1.3e-10797.92PREDICTED: uncharacterized protein LOC105435750 isoform X1 [Cucumis sativus][more]
gi|225433764|ref|XP_002271254.1|2.3e-4053.50PREDICTED: uncharacterized protein LOC100251518 [Vitis vinifera][more]
gi|743912224|ref|XP_010999984.1|1.5e-3952.00PREDICTED: uncharacterized protein LOC105107671 [Populus euphratica][more]
gi|224131566|ref|XP_002321117.1|4.4e-3952.00hypothetical protein POPTR_0014s14900g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001202WW_dom
IPR015767Rho GTPase activating protein
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.365530.1Cucsa.365530.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001202WW domainPROFILEPS50020WW_DOMAIN_2coord: 57..91
score: 11
IPR001202WW domainunknownSSF51045WW domaincoord: 52..92
score: 2.9
IPR015767Rho GTPase activating proteinPANTHERPTHR23181RHO GTPASE ACTIVATING PROTEINcoord: 47..182
score: 1.1
NoneNo IPR availableGENE3DG3DSA:2.20.70.10coord: 56..89
score: 7.