Cucsa.365010 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.365010
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold03611 : 2504631 .. 2504801 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCTGCGAAAGCCTAGGCGAAGCCTCACAATGCAAGTCAGATTCGTGGATGAGGGTAGACCGCTGTCAACGACAAAGCCTTGGGTTCGCTTAGAGTGTGGACACCGGTCGTCGCTGCCTCTTGCTATTGAAGAGTCGCCGGAGAAGAAGAATGGTGGTCGGCGGTGA

mRNA sequence

ATGATGCTGCGAAAGCCTAGGCGAAGCCTCACAATGCAAGTCAGATTCGTGGATGAGGGTAGACCGCTGTCAACGACAAAGCCTTGGGTTCGCTTAGAGTGTGGACACCGGTCGTCGCTGCCTCTTGCTATTGAAGAGTCGCCGGAGAAGAAGAATGGTGGTCGGCGGTGA

Coding sequence (CDS)

ATGATGCTGCGAAAGCCTAGGCGAAGCCTCACAATGCAAGTCAGATTCGTGGATGAGGGTAGACCGCTGTCAACGACAAAGCCTTGGGTTCGCTTAGAGTGTGGACACCGGTCGTCGCTGCCTCTTGCTATTGAAGAGTCGCCGGAGAAGAAGAATGGTGGTCGGCGGTGA

Protein sequence

MMLRKPRRSLTMQVRFVDEGRPLSTTKPWVRLECGHRSSLPLAIEESPEKKNGGRR*
Homology
[Close]
BLAST of Cucsa.365010 vs. TrEMBL
Match: A0A0A0K9B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G042320 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 4.2e-24
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MMLRKPRRSLTMQVRFVDEGRPLSTTKPWVRLECGHRSSLPLAIEESPEKKNGGRR 57
          MMLRKPRRSLTMQVRFVDEGRPLSTTKPWVRLECGHRSSLPLAIEESPEKKNGGRR
Sbjct: 8  MMLRKPRRSLTMQVRFVDEGRPLSTTKPWVRLECGHRSSLPLAIEESPEKKNGGRR 63

[Close]
BLAST of Cucsa.365010 vs. NCBI nr
Match: gi|700190794|gb|KGN45998.1| (hypothetical protein Csa_6G042320 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 6.0e-24
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MMLRKPRRSLTMQVRFVDEGRPLSTTKPWVRLECGHRSSLPLAIEESPEKKNGGRR 57
          MMLRKPRRSLTMQVRFVDEGRPLSTTKPWVRLECGHRSSLPLAIEESPEKKNGGRR
Sbjct: 8  MMLRKPRRSLTMQVRFVDEGRPLSTTKPWVRLECGHRSSLPLAIEESPEKKNGGRR 63

The following BLAST results are available for this feature:
BLAST of Cucsa.365010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9B2_CUCSA4.2e-24100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G042320 PE=4 SV=1[more]
BLAST of Cucsa.365010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190794|gb|KGN45998.1|6.0e-24100.00hypothetical protein Csa_6G042320 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.365010.1Cucsa.365010.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.365010Csa6G042320Cucumber (Chinese Long) v2cgycuB511
Cucsa.365010CSPI06G03580Wild cucumber (PI 183967)cgycpiB540
Cucsa.365010CsaV3_6G003870Cucumber (Chinese Long) v3cgycucB556
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.365010Cucurbita pepo (Zucchini)cgycpeB0949
Cucsa.365010Cucurbita pepo (Zucchini)cgycpeB0957
Cucsa.365010Bottle gourd (USVL1VR-Ls)cgylsiB590
Cucsa.365010Melon (DHL92) v3.6.1cgymedB588
Cucsa.365010Silver-seed gourdcarcgyB0102
Cucsa.365010Watermelon (97103) v2cgywmbB628
Cucsa.365010Watermelon (97103) v2cgywmbB632
Cucsa.365010Wax gourdcgywgoB732
Cucsa.365010Cucurbita maxima (Rimu)cgycmaB1000
Cucsa.365010Cucurbita maxima (Rimu)cgycmaB1011
Cucsa.365010Cucurbita moschata (Rifu)cgycmoB1001
Cucsa.365010Cucurbita moschata (Rifu)cgycmoB1011
Cucsa.365010Melon (DHL92) v3.5.1cgymeB589
Cucsa.365010Watermelon (Charleston Gray)cgywcgB626