Cucsa.364940 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.364940
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold03611 : 2418530 .. 2419578 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAAACGTTTCAAATTGCCTCAGAAACGTAAAATTCAAATTTTGCTAGTGCAGAGGCCATCTTTCTCCAGATTGTGGAATTTCCAATCATTTCAAGTGTGCCAAAGTAAATCCCCTCATGCTCCAAAAATTCTTAGACATTACATCCATAAGCAAACCTCCTTCAACAATGTTTGAACTGCCCTACTAAAATCGGAATTAAATGGGGTTTGACCTTAAAGTTCCCCCTTTGGACTCTCTTCGGATCCATCCCATCAAGCACTCCATTTCTTATAAGAATCTGGATCTTCTTGAAGTATACAGCTCTAAAGTTCAGGCCCCTGAATGCTTTATTAGATCAGTAAATGCAGATTCTACATCTGAGCTTTTCAATATTTCTACACCATCACTAACACAAAGACTTCAATTCTGTGGGCTCCCTCTGCAAAGCTGATTATTCTTTCAAGAACCAGCTTGATATTTCCTCTCCATTCAGTGTTAGTAGTGAAGAATCAACCGGTGCTCTCAGCGCGTTTGACCTTAAATTAGATTCAGAAATTGAAGGGGTGGGTCTTAATGCTTTGTTTAATGATGAAGGCTTCCCTCCAAATAAAGTTCCCTTGGATCTGTCAAAGGATTTGTTGACAATAGTCAATGATTGTGGAATTATTTTTGCTTAAATTAGCAGTTCAGCCCTCCCATGTTGTTTGACCTCCAATATTGTTCCAATATAGTAAGAGAAAGCAAAAAGAGAATTCAGAAGTTTGTGTAATGGCTTTGCTCGGGATGACCCAAGAGTGGAATGGCTTTTCTCTGTTTCAAAAAAaTATATACATATTAGATCTAAAGTTCATTGCTTTAATCTTGAAGGCTTCCCTACTTTTATTGGACTAGTCCAGATTATCAACTATTTGAGCATTCACCATCTGTATTGAGGTATGTGTTGAAGAAAAGGTTTGCACGTGGTTCCTATGGTAAAGTATTGTTGGCTTTTCATGGTAACTGCCAAGAAGTATTTAGTTCAGAAAGAGAGAATGTTAATGTTTTGTGCAACTCATCTCTAAAA

mRNA sequence

atgaaaaaaacgtttcaaattgcctcagaaactccagattatcaactatttgagcattcaccatctgtattgaggtatgtgttgaagaaaaggtttgcacgtggttcctatggtaaagtattgttggcttttcatggtaactgccaagaagtatttagttcagaaagagagaatgttaatgttttgtgcaactcatctctaaaa

Coding sequence (CDS)

ATGAAAAAAACGTTTCAAATTGCCTCAGAAACTCCAGATTATCAACTATTTGAGCATTCACCATCTGTATTGAGGTATGTGTTGAAGAAAAGGTTTGCACGTGGTTCCTATGGTAAAGTATTGTTGGCTTTTCATGGTAACTGCCAAGAAGTATTTAGTTCAGAAAGAGAGAATGTTAATGTTTTGTGCAACTCATCTCTAAAA

Protein sequence

MKKTFQIASETPDYQLFEHSPSVLRYVLKKRFARGSYGKVLLAFHGNCQEVFSSERENVNVLCNSSLK
Homology
[Close]
BLAST of Cucsa.364940 vs. NCBI nr
Match: gi|778669079|ref|XP_011649191.1| (PREDICTED: uncharacterized protein LOC101210198 isoform X2 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 3.4e-18
Identity = 47/55 (85.45%), Postives = 48/55 (87.27%), Query Frame = 1 

Query: 12  PDYQLFEHSPSVLRYVLKKRFARGSYGKVLLAFHGNCQEVFSSERENVNVLCNSS 67
           PDYQLFEHSPS LRYVLKKRFARGSYG+V LAFHGNCQE FSS  EN NV CNSS
Sbjct: 597 PDYQLFEHSPSALRYVLKKRFARGSYGEVWLAFHGNCQEAFSSVGENDNVSCNSS 651

[Close]
BLAST of Cucsa.364940 vs. NCBI nr
Match: gi|778669082|ref|XP_011649192.1| (PREDICTED: uncharacterized protein LOC101210198 isoform X3 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 3.4e-18
Identity = 47/55 (85.45%), Postives = 48/55 (87.27%), Query Frame = 1 

Query: 12  PDYQLFEHSPSVLRYVLKKRFARGSYGKVLLAFHGNCQEVFSSERENVNVLCNSS 67
           PDYQLFEHSPS LRYVLKKRFARGSYG+V LAFHGNCQE FSS  EN NV CNSS
Sbjct: 597 PDYQLFEHSPSALRYVLKKRFARGSYGEVWLAFHGNCQEAFSSVGENDNVSCNSS 651

[Close]
BLAST of Cucsa.364940 vs. NCBI nr
Match: gi|778669086|ref|XP_011649193.1| (PREDICTED: probable protein phosphatase 2C 51 isoform X4 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 3.4e-18
Identity = 47/55 (85.45%), Postives = 48/55 (87.27%), Query Frame = 1 

Query: 12  PDYQLFEHSPSVLRYVLKKRFARGSYGKVLLAFHGNCQEVFSSERENVNVLCNSS 67
           PDYQLFEHSPS LRYVLKKRFARGSYG+V LAFHGNCQE FSS  EN NV CNSS
Sbjct: 597 PDYQLFEHSPSALRYVLKKRFARGSYGEVWLAFHGNCQEAFSSVGENDNVSCNSS 651

[Close]
BLAST of Cucsa.364940 vs. NCBI nr
Match: gi|778669073|ref|XP_011649189.1| (PREDICTED: uncharacterized protein LOC101210198 isoform X1 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 3.4e-18
Identity = 47/55 (85.45%), Postives = 48/55 (87.27%), Query Frame = 1 

Query: 12  PDYQLFEHSPSVLRYVLKKRFARGSYGKVLLAFHGNCQEVFSSERENVNVLCNSS 67
           PDYQLFEHSPS LRYVLKKRFARGSYG+V LAFHGNCQE FSS  EN NV CNSS
Sbjct: 597 PDYQLFEHSPSALRYVLKKRFARGSYGEVWLAFHGNCQEAFSSVGENDNVSCNSS 651

[Close]
BLAST of Cucsa.364940 vs. NCBI nr
Match: gi|659098010|ref|XP_008449929.1| (PREDICTED: uncharacterized protein LOC103491659 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 5.8e-10
Identity = 34/43 (79.07%), Postives = 36/43 (83.72%), Query Frame = 1 

Query: 26  YVLKKRFARGSYGKVLLAFHGNCQEVFSSERENVNVLCNSSLK 69
           YVLKKRFARGSYG+V LAFHGNCQE FSS  EN NV CNSS +
Sbjct: 679 YVLKKRFARGSYGEVWLAFHGNCQEAFSSVGENDNVSCNSSFE 721

The following BLAST results are available for this feature:
BLAST of Cucsa.364940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778669079|ref|XP_011649191.1|3.4e-1885.45PREDICTED: uncharacterized protein LOC101210198 isoform X2 [Cucumis sativus][more]
gi|778669082|ref|XP_011649192.1|3.4e-1885.45PREDICTED: uncharacterized protein LOC101210198 isoform X3 [Cucumis sativus][more]
gi|778669086|ref|XP_011649193.1|3.4e-1885.45PREDICTED: probable protein phosphatase 2C 51 isoform X4 [Cucumis sativus][more]
gi|778669073|ref|XP_011649189.1|3.4e-1885.45PREDICTED: uncharacterized protein LOC101210198 isoform X1 [Cucumis sativus][more]
gi|659098010|ref|XP_008449929.1|5.8e-1079.07PREDICTED: uncharacterized protein LOC103491659 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.364940.1Cucsa.364940.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.364940Cucumber (Chinese Long) v3cgycucB556
Cucsa.364940Watermelon (97103) v2cgywmbB628
Cucsa.364940Watermelon (97103) v2cgywmbB632
Cucsa.364940Wax gourdcgywgoB732
Cucsa.364940Cucurbita maxima (Rimu)cgycmaB1011
Cucsa.364940Cucurbita moschata (Rifu)cgycmoB1011
Cucsa.364940Wild cucumber (PI 183967)cgycpiB540
Cucsa.364940Cucumber (Chinese Long) v2cgycuB511
Cucsa.364940Melon (DHL92) v3.5.1cgymeB589
Cucsa.364940Watermelon (Charleston Gray)cgywcgB626
Cucsa.364940Cucurbita pepo (Zucchini)cgycpeB0957
Cucsa.364940Bottle gourd (USVL1VR-Ls)cgylsiB590
Cucsa.364940Melon (DHL92) v3.6.1cgymedB588
Cucsa.364940Silver-seed gourdcarcgyB0102