Cucsa.362740 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.362740
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description40S ribosomal protein S13
Locationscaffold03611 : 504637 .. 507284 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGCAGTGTTGCCTTTCAGCGAAGGAGCAGACGAAGTTGTAGTGTTCAACCTCTGAGGATCGCTATCCGTCTCTTCCCCACGCGCCGTCGCCATGGGTCGTATGCATAGTCGAGGGTTTGTATTTACTTTCACCGAAGAAAGTTTGCTTTTAAGCTTCACGAAAAAATCTGTTTACAGCTTTTAAATGGGGTTTTTTTTTTTTTCCCATTCTTCTTCTTTGCATTTGCAGTAAGGGTATTTCAGCTTCCGCACTGCCTTACAAGAGGACGCCGCCTAGTTGGTTGAAGATCTCTTCTCAGGATGTGAGAATTCCGCGCCAAATTTTTATTTTTCTAGTATTTTGGATTAAGCTTTGGTCGTTATAATTGATTAGAAATATAAAATTTTGGAATGGAAAATGTGTGAAAATGTAGATTTCATCTAATTCCATTCCGTTGTGAAGCCATTCGATCATTAGTTAATATCGAGGTTTCCAATGTTTTTACAATGCTTCGGGTTTCCAATGTGTGAAAATGTAGATTTCATGTAATTCCATTATGAGGATGGTTCATGTGATTGGCAAAATAATAGTAATTAAAATTGCAGTGCTCATTTTAGTGAAGCATGATGAAATGTATTTGAGTGTTATCTGAGTACCAAAGTTTGATGGTTGCTCTAGAGTGTCACTTTAAATGTTTTTTTCTTTATAAGAATGTCATTTTAAATGTTAGTCATTCTCAAGTTCTCATTGAAGGATGGGAGGTTTGTTTTTCTACTATCTGTAGAACTAGAAATTAATTTCTTTTCTATAACCAATCAGGTCGCTGAAAACATTTGCAAATTTGCCAAGAAGGGTTTGACACCTTCTCAAATTGGTGTTATTCTCCGTGATTCTCATGGGATTGCTCAGGTCAAAAGTGTTACTGGGAACAAAATTTTGCGTATATTGAAGGCTCATGGTGAGCCCTCCGTACCCTTCCTCCTTGAATTTTTTTCTTTTTTATACTTGGGTCGAATTATTCTTTGATTTTTGTCGGTTTTTTCTTGCATCCCTCAGGGCTAGCTCCTGAAATTCCAGAGGATCTTTACCATCTCATTAAAAAAGCTGTTTCAATCAGAAAGCATTTGGAGAGGAACAGGAAAGATAAGGATTCCAAATTCAGGTTGATTTTAGTCGAGAGCAGGATTCATCGCCTGGCCCGGTATTACAAGAAGACAAAGAAGCTCCCCCCTGTCTGGAAGTAGTAAGTATTTTGATAAGCAGAAGACAATGGATTATTTATTGCACTTTTGCATGAAAATGTTGCATAGTGTATACTAAAGTTTATATATTCTCACATGCTGCTGATCTCTAGCTTCCAAATTTTCCTAGAAGGATAAAAAGAGAAATTGGGTATAAAGGATGATAACCAGTTAGCATCTGGTTTATTTCAGTATCATAATAGCAATTGGATTTTTCTTTTTTGAGTGCAACAGGTGGGGATGGTGGGGGATTGATTTAATCTTAGGGGGATGTATAGGTCTGTGGCAAAAACTAGATTTATCTCATAAGATAACTAAAATGTAGCTTTGTGATGTTTCAATACATAGGTTCATTTATCTTTGCACATTGGATTGCCAAACTGCAAAGTGTCTTTACAGAATTGCATCTACTGCCCTAGACCTGAGAATCTTATTGTATGTGTTTGGTTCCAGTCCTTGCATTATGCTATAGCCACCCATCTCTTACTCCCAAGGATGGTTAGTCATCTCAAAACCAGCAATAAGTGAAAACATCGGTTAATAAGTTATTATTAACCTTTAGGTTTGTAACTAAGAGGTTAAAATGGCCCTTTGGAGCACTAAGTTGGTTATTATAGTTTGTAAGTTATAATAGTGTGTAGGTTATAATAATAGTGTGTATGTTTATGGTACAAACTATTTTAACGGGGAGAGTAAATAGTGAACGTAGTAACAAAGAAAGTGAGAATGGGTAGGAAATTGTAAACAATGTAGCAATTATGGATTTGAAATAGTAATATTGTAGATAATTGTAGCTTATAACAGCTAGAAACACCAACTATTGTAATTGGAGCTCTAAACAAAGCTCACTCCACCCACTTGAAATTTAGGGCCCACAAACAACCCTCAAGTATGTCTCCCAATTCTCAAACTCTTGCCATTAGGATGAGGACTTTCTGAAGGTCTTAGATCACCAAATGTCAGAATGTCAAACCATATGTTAAAGTTATTAGTTTGTGATGTTTTTGCTGATTCTTAATCGTTGTTCGCATCCTTCTTTATTGTGAAATTGTCTAAACATTGTCAATTTTGTATTCTTCTAACTGCCGAACTGTCTAATTGACCACGGGTGTTCGTTTTCTACAGTGAATCCACCACGGCCAGCACCCTCGTTGCTTAGAAGCAAGTATTTTGATGATTACTAAGAAAAACTAAGGAGTTATTTTGGGGATTCAACTTTTCGTTTAGTAGTTATGTTTAATACTTTAATCAGTGCCAAGTGTGGCAGTTATCCATCTTGTGCCTCAGATTGGAGTCATTGAAGTTTTGTTACTCTTATTGCAAATTTGATTTCTGCAATGTTTTTGTGAATGACTGTTGCTTCTTCAATTGCTCGTATGGGGTGCAAGTGTAAGTGCTTCTAATTCAGCTCAAGTTTTTATTAGCA

mRNA sequence

TTGCAGTGTTGCCTTTCAGCGAAGGAGCAGACGAAGTTGTAGTGTTCAACCTCTGAGGATCGCTATCCGTCTCTTCCCCACGCGCCGTCGCCATGGGTCGTATGCATAGTCGAGGTAAGGGTATTTCAGCTTCCGCACTGCCTTACAAGAGGACGCCGCCTAGTTGGTTGAAGATCTCTTCTCAGGATGTCGCTGAAAACATTTGCAAATTTGCCAAGAAGGGTTTGACACCTTCTCAAATTGGTGTTATTCTCCGTGATTCTCATGGGATTGCTCAGGTCAAAAGTGTTACTGGGAACAAAATTTTGCGTATATTGAAGGCTCATGGGCTAGCTCCTGAAATTCCAGAGGATCTTTACCATCTCATTAAAAAAGCTGTTTCAATCAGAAAGCATTTGGAGAGGAACAGGAAAGATAAGGATTCCAAATTCAGGTTGATTTTAGTCGAGAGCAGGATTCATCGCCTGGCCCGGTATTACAAGAAGACAAAGAAGCTCCCCCCTGTCTGGAAGTATGAATCCACCACGGCCAGCACCCTCGTTGCTTAGAAGCAAGTATTTTGATGATTACTAAGAAAAACTAAGGAGTTATTTTGGGGATTCAACTTTTCGTTTAGTAGTTATGTTTAATACTTTAATCAGTGCCAAGTGTGGCAGTTATCCATCTTGTGCCTCAGATTGGAGTCATTGAAGTTTTGTTACTCTTATTGCAAATTTGATTTCTGCAATGTTTTTGTGAATGACTGTTGCTTCTTCAATTGCTCGTATGGGGTGCAAGTGTAAGTGCTTCTAATTCAGCTCAAGTTTTTATTAGCA

Coding sequence (CDS)

ATGGGTCGTATGCATAGTCGAGGTAAGGGTATTTCAGCTTCCGCACTGCCTTACAAGAGGACGCCGCCTAGTTGGTTGAAGATCTCTTCTCAGGATGTCGCTGAAAACATTTGCAAATTTGCCAAGAAGGGTTTGACACCTTCTCAAATTGGTGTTATTCTCCGTGATTCTCATGGGATTGCTCAGGTCAAAAGTGTTACTGGGAACAAAATTTTGCGTATATTGAAGGCTCATGGGCTAGCTCCTGAAATTCCAGAGGATCTTTACCATCTCATTAAAAAAGCTGTTTCAATCAGAAAGCATTTGGAGAGGAACAGGAAAGATAAGGATTCCAAATTCAGGTTGATTTTAGTCGAGAGCAGGATTCATCGCCTGGCCCGGTATTACAAGAAGACAAAGAAGCTCCCCCCTGTCTGGAAGTATGAATCCACCACGGCCAGCACCCTCGTTGCTTAG

Protein sequence

MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA*
Homology
[Close]
BLAST of Cucsa.362740 vs. Swiss-Prot
Match: RS13_SOYBN (40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 4.6e-79
Identity = 147/151 (97.35%), Postives = 149/151 (98.68%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVNSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Cucsa.362740 vs. Swiss-Prot
Match: RS132_ARATH (40S ribosomal protein S13-2 OS=Arabidopsis thaliana GN=RPS13B PE=2 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 4.7e-76
Identity = 142/151 (94.04%), Postives = 147/151 (97.35%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +SQDV E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Cucsa.362740 vs. Swiss-Prot
Match: RS13_PEA (40S ribosomal protein S13 OS=Pisum sativum GN=RPS13 PE=2 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 8.0e-76
Identity = 142/151 (94.04%), Postives = 147/151 (97.35%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60
           MGR+HS+GKGIS+SALPY+RT PSWLKISSQDV E ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRLHSKGKGISSSALPYRRTAPSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER RKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Cucsa.362740 vs. Swiss-Prot
Match: RS131_ARATH (40S ribosomal protein S13-1 OS=Arabidopsis thaliana GN=RPS13A PE=2 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 1.8e-75
Identity = 141/151 (93.38%), Postives = 146/151 (96.69%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK + QDV E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Cucsa.362740 vs. Swiss-Prot
Match: RS132_ORYSJ (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.3e-69
Identity = 131/151 (86.75%), Postives = 138/151 (91.39%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLK ++ DV E I K AKKG  PSQIGV+LRD HGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKTAASDVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
             VKSVTG+KILRILKAHGLAPEIPEDLY LIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct: 121 RIHRLARYYKRTKKLPPTWKYESTTASTLVA 151

[Close]
BLAST of Cucsa.362740 vs. TrEMBL
Match: A0A0A0KEP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G077430 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 4.1e-79
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Cucsa.362740 vs. TrEMBL
Match: A0A059CJ48_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02462 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 6.0e-78
Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Cucsa.362740 vs. TrEMBL
Match: V7AML9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G082900g PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.0e-77
Identity = 148/151 (98.01%), Postives = 150/151 (99.34%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLKIS+QDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Cucsa.362740 vs. TrEMBL
Match: A0A0B0MHR3_GOSAR (40S ribosomal S13 OS=Gossypium arboreum GN=F383_19582 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.3e-77
Identity = 148/151 (98.01%), Postives = 150/151 (99.34%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Cucsa.362740 vs. TrEMBL
Match: A0A059CIJ2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02461 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.3e-77
Identity = 148/151 (98.01%), Postives = 150/151 (99.34%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Cucsa.362740 vs. TAIR10
Match: AT4G00100.1 (AT4G00100.1 ribosomal protein S13A)

HSP 1 Score: 285.0 bits (728), Expect = 2.7e-77
Identity = 142/151 (94.04%), Postives = 147/151 (97.35%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +SQDV E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Cucsa.362740 vs. TAIR10
Match: AT3G60770.1 (AT3G60770.1 Ribosomal protein S13/S15)

HSP 1 Score: 283.1 bits (723), Expect = 1.0e-76
Identity = 141/151 (93.38%), Postives = 146/151 (96.69%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK + QDV E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Cucsa.362740 vs. NCBI nr
Match: gi|449472968|ref|XP_004153746.1| (PREDICTED: 40S ribosomal protein S13 [Cucumis sativus])

HSP 1 Score: 302.0 bits (772), Expect = 5.9e-79
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Cucsa.362740 vs. NCBI nr
Match: gi|659096061|ref|XP_008448906.1| (PREDICTED: 40S ribosomal protein S13 [Cucumis melo])

HSP 1 Score: 298.9 bits (764), Expect = 5.0e-78
Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKIS+QDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Cucsa.362740 vs. NCBI nr
Match: gi|702328061|ref|XP_010053902.1| (PREDICTED: 40S ribosomal protein S13 [Eucalyptus grandis])

HSP 1 Score: 298.1 bits (762), Expect = 8.6e-78
Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Cucsa.362740 vs. NCBI nr
Match: gi|593265380|ref|XP_007134868.1| (hypothetical protein PHAVU_010G082900g [Phaseolus vulgaris])

HSP 1 Score: 297.4 bits (760), Expect = 1.5e-77
Identity = 148/151 (98.01%), Postives = 150/151 (99.34%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLKIS+QDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISAQDVDENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Cucsa.362740 vs. NCBI nr
Match: gi|951009695|ref|XP_014509360.1| (PREDICTED: 40S ribosomal protein S13 [Vigna radiata var. radiata])

HSP 1 Score: 297.0 bits (759), Expect = 1.9e-77
Identity = 148/151 (98.01%), Postives = 150/151 (99.34%), Query Frame = 1 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

The following BLAST results are available for this feature:
BLAST of Cucsa.362740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS13_SOYBN4.6e-7997.3540S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1[more]
RS132_ARATH4.7e-7694.0440S ribosomal protein S13-2 OS=Arabidopsis thaliana GN=RPS13B PE=2 SV=1[more]
RS13_PEA8.0e-7694.0440S ribosomal protein S13 OS=Pisum sativum GN=RPS13 PE=2 SV=1[more]
RS131_ARATH1.8e-7593.3840S ribosomal protein S13-1 OS=Arabidopsis thaliana GN=RPS13A PE=2 SV=1[more]
RS132_ORYSJ3.3e-6986.7540S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica GN=Os08g0117300 PE=1... [more]
BLAST of Cucsa.362740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEP4_CUCSA4.1e-79100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G077430 PE=3 SV=1[more]
A0A059CJ48_EUCGR6.0e-7898.68Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02462 PE=3 SV=1[more]
V7AML9_PHAVU1.0e-7798.01Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G082900g PE=3 SV=1[more]
A0A0B0MHR3_GOSAR1.3e-7798.0140S ribosomal S13 OS=Gossypium arboreum GN=F383_19582 PE=3 SV=1[more]
A0A059CIJ2_EUCGR1.3e-7798.01Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02461 PE=3 SV=1[more]
BLAST of Cucsa.362740 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G00100.12.7e-7794.04 ribosomal protein S13A[more]
AT3G60770.11.0e-7693.38 Ribosomal protein S13/S15[more]
BLAST of Cucsa.362740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449472968|ref|XP_004153746.1|5.9e-79100.00PREDICTED: 40S ribosomal protein S13 [Cucumis sativus][more]
gi|659096061|ref|XP_008448906.1|5.0e-7898.68PREDICTED: 40S ribosomal protein S13 [Cucumis melo][more]
gi|702328061|ref|XP_010053902.1|8.6e-7898.68PREDICTED: 40S ribosomal protein S13 [Eucalyptus grandis][more]
gi|593265380|ref|XP_007134868.1|1.5e-7798.01hypothetical protein PHAVU_010G082900g [Phaseolus vulgaris][more]
gi|951009695|ref|XP_014509360.1|1.9e-7798.01PREDICTED: 40S ribosomal protein S13 [Vigna radiata var. radiata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000589Ribosomal_S15
IPR009068S15_NS1_RNA-bd
IPR012606Ribosomal_S13/S15_N
IPR023029Ribosomal_S15P
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.362740.1Cucsa.362740.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000589Ribosomal protein S15PFAMPF00312Ribosomal_S15coord: 74..146
score: 1.2
IPR000589Ribosomal protein S15SMARTSM01387Ribosomal_S15_2coord: 70..149
score: 2.9
IPR000589Ribosomal protein S15PROSITEPS00362RIBOSOMAL_S15coord: 98..128
scor
IPR009068S15/NS1, RNA-bindingunknownSSF47060S15/NS1 RNA-binding domaincoord: 66..142
score: 5.3
IPR012606Ribosomal protein S13/S15, N-terminalPFAMPF08069Ribosomal_S13_Ncoord: 1..60
score: 6.2
IPR012606Ribosomal protein S13/S15, N-terminalSMARTSM01386Ribosomal_S13_N_2coord: 1..60
score: 8.2
IPR023029Ribosomal protein S15PHAMAPMF_01343_ARibosomal_S15_Acoord: 3..149
score: 31
NoneNo IPR availablePANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 2..151
score: 1.9E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.362740Cla006965Watermelon (97103) v1cgywmB666
Cucsa.362740Csa6G077430Cucumber (Chinese Long) v2cgycuB511
Cucsa.362740MELO3C005580Melon (DHL92) v3.5.1cgymeB585
Cucsa.362740MELO3C022497Melon (DHL92) v3.5.1cgymeB586
Cucsa.362740ClCG06G000430Watermelon (Charleston Gray)cgywcgB620
Cucsa.362740CSPI05G06350Wild cucumber (PI 183967)cgycpiB539
Cucsa.362740CSPI06G05920Wild cucumber (PI 183967)cgycpiB540
Cucsa.362740CmaCh15G011630Cucurbita maxima (Rimu)cgycmaB0994
Cucsa.362740CmaCh17G000350Cucurbita maxima (Rimu)cgycmaB0998
Cucsa.362740CmaCh08G009570Cucurbita maxima (Rimu)cgycmaB1013
Cucsa.362740CmoCh08G009250Cucurbita moschata (Rifu)cgycmoB1013
Cucsa.362740CmoCh17G000360Cucurbita moschata (Rifu)cgycmoB0999
Cucsa.362740Lsi09G018950Bottle gourd (USVL1VR-Ls)cgylsiB583
Cucsa.362740Cp4.1LG17g02620Cucurbita pepo (Zucchini)cgycpeB0954
Cucsa.362740MELO3C022497.2Melon (DHL92) v3.6.1cgymedB586
Cucsa.362740CsaV3_6G006230Cucumber (Chinese Long) v3cgycucB556
Cucsa.362740CsaV3_5G003770Cucumber (Chinese Long) v3cgycucB555
Cucsa.362740Cla97C01G003740Watermelon (97103) v2cgywmbB620
Cucsa.362740Cla97C06G109710Watermelon (97103) v2cgywmbB625
Cucsa.362740Bhi12G002285Wax gourdcgywgoB724
Cucsa.362740Carg11085Silver-seed gourdcarcgyB1193
Cucsa.362740Carg10199Silver-seed gourdcarcgyB0271
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cucsa.362740Cucsa.302270Cucumber (Gy14) v1cgycgyB142
The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.362740Silver-seed gourdcarcgyB0695
Cucsa.362740Cucumber (Chinese Long) v3cgycucB553
Cucsa.362740Watermelon (97103) v2cgywmbB622
Cucsa.362740Cucumber (Gy14) v1cgycgyB130
Cucsa.362740Cucurbita maxima (Rimu)cgycmaB0990
Cucsa.362740Cucurbita maxima (Rimu)cgycmaB1007
Cucsa.362740Cucurbita moschata (Rifu)cgycmoB0992
Cucsa.362740Cucurbita moschata (Rifu)cgycmoB1007
Cucsa.362740Wild cucumber (PI 183967)cgycpiB537
Cucsa.362740Cucumber (Chinese Long) v2cgycuB509
Cucsa.362740Melon (DHL92) v3.5.1cgymeB594
Cucsa.362740Watermelon (Charleston Gray)cgywcgB617
Cucsa.362740Watermelon (97103) v1cgywmB663
Cucsa.362740Cucurbita pepo (Zucchini)cgycpeB0947
Cucsa.362740Cucurbita pepo (Zucchini)cgycpeB0965
Cucsa.362740Cucurbita pepo (Zucchini)cgycpeB0969
Cucsa.362740Bottle gourd (USVL1VR-Ls)cgylsiB585
Cucsa.362740Melon (DHL92) v3.6.1cgymedB592