Cucsa.362160 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.362160
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description60S ribosomal protein L38
Locationscaffold03611 : 136165 .. 138410 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATCAGCAACTACGCGGCAGTCTCTGTTCTGCCACCAAAATGGTACCTCTCAATTTCTAATCCTTGATTGAATTTTTTTtCTATTGTTCATTTTCTTAATGCATTTCGGATTCAACCTACTTTTGAATTCTTATGTTTGCTGTCGCCGATTTTTTATCTGCCCTGAATTAGCTTCTGTTCTATTTAGTTGAACGTTGTGAGGGTGCATATCATCATTTAATTTTCTATTCTCGTTGCAATTCTATGGGTTTCTTGTGTTTTTGTTGGTAAACGTTTATGCGGATTTAATAACCGTAATGTACATGTTTTCATCTCGTTTGGATATCTTATGCTTTAGGTTATTTTGAAATTAATCAAATTGTGTCTTCTTGTTCCATATTTGGATTTGCAGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAGGATGTTGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAGGCAGACAAGTTGAAGCAATCCCTTCCACCAGGTTAGGTTTCACTCTTAATAACAAACATTGGAACGCTATATTGGAAGTGGCTATGTATGTTGTTTAAGTGTTTTTAAATGGTTTGATAGATTAGAAGTGTTCCATTTTTTGTTTGTGGCGACTATCAGCGCTCACATGTGCTTCCATCATCTGATTTTGACTGAAAGGAACTTGACTTTAATCTCCTAAAACGCACCTTTTCTTTTACTAAATTCTCTATTAGTATTAATAGACCTTCTCACTAATCTCTCCCTAGTGAATTTTTTTtCCTACAACTTCGCATTTTCATCTTACTTCCTCGCATACGTTTCGTGACAAAAATTTGCGTATCTCTGTTGCACTTACTTAGTCTCAATCTGCTTAGCTATAAAAATAAATTGCTTTCGATGACTCTGTAGACGGGCAAAATCATTTGGGTGAGTGTTTGTCCCTAAAACGCACCTTTCTTTGGGGGATTTGACTTGAGAGGACGTTTAGACTTTTTAGGAGTTTAGAGATCAGAGATTTCTGACTAGTGGGCTGTGAGGTTGGTTATCTCCCTTCCTCCCATGTTTGTTTTTCCTTAGATTATGACCCAAGAAACCTCCCGTCTTGGGACCTTGTGTGGTGGATTCGATGCATAAAAGACTTGCTTCTTGAGGGATTTTTTTGTGGCAAGTAGTTAATGTGGGAAAACTAGCGAGCCTGGGGTTTAGAATTAGATATTTTAAAAGCTAGAAACAAAGCCTATTGGCTAAATTGCTGTGGTGTTTTCTGAGTGGTCTACTCTCTTTTACTTGGGTTGGGTCGTAATTTGTTGAACTGGGAACCAACGAATTTCATGGCTCTCTTATCTTTGATTGGATGGGACCATACCTAAAAGGTCACGTTCTTTATCTAGTAGGATATCCGTTGAAAAGTTAATGCTCTTGATAGGCTTTCGAGGAAGTTGTCTTCTTATTGCCCTGTTTTTTtATCAACCTTCGTCAGAAATTGGAGGAAGAGTTGGATCATATCTTGTAGAGATGTGAGTTTGGTCTAGTCTTTCGTAATTATTCTTTAGGTTTCTCTGCTTTGCTGACAGCCTGACACCCTTTCCTTCTGTCGCGTTACCTTTTGTGGGTCAGTATTCTGGATCATGGTGTGTTCTTCCATGTCTTTTCATTGAAAGGCGGGTTCTGTATACATAAAAACACCTGTCTTTGTTTTTGTTTATGGTCACCTTTTTCAACAAAAAGGTCTCTATAATCCTTTCCTCAATAAGTTTTGTAAAATGGGATGAGGATGGGTTTGGTCCCGAGTATAAATTGATATTGACAGCGAAACCTGACATTTACTTCTCAACTTTTGCAGGTTTGAGTGTACAAGATCTGTGAAAGAATGGTTGAAGTTTTCTCGTGATCACAGGGATGAGGACTAGTTTTTTTTTtCCAACTATTTAGCATATGTTTAAATTTCATTTTTGAGCTTGTAGTAATCCACACACTATCTTCATTTTCGGGTAGAGATTGGATGTCGGAGTTTTTCATCTATGCAGTTGATGTTTCACCAAATATATCTTCAACAAAAGGAAAATTTCTTCATGCACCCTTTTATTCCTCGTTTAGTTTTTGAAACAATTTTATTTTTtAGTCCAATGGTGGGGAGATTTAAACGTTCGACCATGGTGCAACTCTTGGGTAATAGGAACT

mRNA sequence

TAATCAGCAACTACGCGGCAGTCTCTGTTCTGCCACCAAAATGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAGGATGTTGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAGGCAGACAAGTTGAAGCAATCCCTTCCACCAGGTTTGAGTGTACAAGATCTGTGAAAGAATGGTTGAAGTTTTCTCGTGATCACAGGGATGAGGACTAGTTTTTTTTTTCCAACTATTTAGCATATGTTTAAATTTCATTTTTGAGCTTGTAGTAATCCACACACTATCTTCATTTTCGGGTAGAGATTGGATGTCGGAGTTTTTCATCTATGCAGTTGATGTTTCACCAAATATATCTTCAACAAAAGGAAAATTTCTTCATGCACCCTTTTATTCCTCGTTTAGTTTTTGAAACAATTTTATTTTTTAGTCCAATGGTGGGGAGATTTAAACGTTCGACCATGGTGCAACTCTTGGGTAataggaact

Coding sequence (CDS)

ATGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAGGATGTTGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAGGCAGACAAGTTGAAGCAATCCCTTCCACCAGGTTTGAGTGTACAAGATCTGTGA

Protein sequence

MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL*
Homology
[Close]
BLAST of Cucsa.362160 vs. Swiss-Prot
Match: RL38_ARATH (60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.2e-31
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]
BLAST of Cucsa.362160 vs. Swiss-Prot
Match: RL38_SOLLC (60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-29
Identity = 63/69 (91.30%), Postives = 67/69 (97.10%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]
BLAST of Cucsa.362160 vs. Swiss-Prot
Match: RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.1e-26
Identity = 57/69 (82.61%), Postives = 65/69 (94.20%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGL+V++L
Sbjct: 61 PPGLAVKEL 69

[Close]
BLAST of Cucsa.362160 vs. Swiss-Prot
Match: RL38_MOUSE (60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=1 SV=3)

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-24
Identity = 54/69 (78.26%), Postives = 64/69 (92.75%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGL+V+DL
Sbjct: 61 PPGLAVKDL 69

[Close]
BLAST of Cucsa.362160 vs. Swiss-Prot
Match: RL38_RAT (60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2)

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-24
Identity = 53/69 (76.81%), Postives = 64/69 (92.75%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGL+V++L
Sbjct: 61 PPGLAVKEL 69

[Close]
BLAST of Cucsa.362160 vs. TrEMBL
Match: A0A058ZXA9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00006 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]
BLAST of Cucsa.362160 vs. TrEMBL
Match: A0A0A0KBT2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G081500 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]
BLAST of Cucsa.362160 vs. TrEMBL
Match: D7SPL7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00930 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 59  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 118

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 119 PPGLSVQDL 127

[Close]
BLAST of Cucsa.362160 vs. TrEMBL
Match: A0A068U8M1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018662001 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 36  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 95

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 96  PPGLSVQDL 104

[Close]
BLAST of Cucsa.362160 vs. TrEMBL
Match: A0A068VBT7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00007069001 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 36  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 95

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 96  PPGLSVQDL 104

[Close]
BLAST of Cucsa.362160 vs. TAIR10
Match: AT2G43460.1 (AT2G43460.1 Ribosomal L38e protein family)

HSP 1 Score: 136.3 bits (342), Expect = 7.0e-33
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]
BLAST of Cucsa.362160 vs. TAIR10
Match: AT3G59540.1 (AT3G59540.1 Ribosomal L38e protein family)

HSP 1 Score: 136.3 bits (342), Expect = 7.0e-33
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]
BLAST of Cucsa.362160 vs. NCBI nr
Match: gi|629123314|gb|KCW87739.1| (hypothetical protein EUGRSUZ_A00108, partial [Eucalyptus grandis])

HSP 1 Score: 139.4 bits (350), Expect = 2.4e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 32  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 91

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 92  PPGLSVQDL 100

[Close]
BLAST of Cucsa.362160 vs. NCBI nr
Match: gi|297735234|emb|CBI17596.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 139.4 bits (350), Expect = 2.4e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 59  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 118

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 119 PPGLSVQDL 127

[Close]
BLAST of Cucsa.362160 vs. NCBI nr
Match: gi|661878012|emb|CDP18171.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 139.4 bits (350), Expect = 2.4e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 36  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 95

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 96  PPGLSVQDL 104

[Close]
BLAST of Cucsa.362160 vs. NCBI nr
Match: gi|359476741|ref|XP_003631881.1| (PREDICTED: 60S ribosomal protein L38 [Vitis vinifera])

HSP 1 Score: 139.4 bits (350), Expect = 2.4e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]
BLAST of Cucsa.362160 vs. NCBI nr
Match: gi|661891717|emb|CDP04642.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 139.4 bits (350), Expect = 2.4e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 36  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 95

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 96  PPGLSVQDL 104

The following BLAST results are available for this feature:
BLAST of Cucsa.362160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL38_ARATH1.2e-3195.6560S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1[more]
RL38_SOLLC1.5e-2991.3060S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1[more]
RL38_BRABE2.1e-2682.6160S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1[more]
RL38_MOUSE1.1e-2478.2660S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=1 SV=3[more]
RL38_RAT3.3e-2476.8160S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2[more]
BLAST of Cucsa.362160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A058ZXA9_EUCGR1.6e-30100.00Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00006 PE=3 SV=1[more]
A0A0A0KBT2_CUCSA1.6e-30100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G081500 PE=3 SV=1[more]
D7SPL7_VITVI1.6e-30100.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00930 PE=3 SV=... [more]
A0A068U8M1_COFCA1.6e-30100.00Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018662001 PE=3 SV=1[more]
A0A068VBT7_COFCA1.6e-30100.00Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00007069001 PE=3 SV=1[more]
BLAST of Cucsa.362160 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G43460.17.0e-3395.65 Ribosomal L38e protein family[more]
AT3G59540.17.0e-3395.65 Ribosomal L38e protein family[more]
BLAST of Cucsa.362160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|629123314|gb|KCW87739.1|2.4e-30100.00hypothetical protein EUGRSUZ_A00108, partial [Eucalyptus grandis][more]
gi|297735234|emb|CBI17596.3|2.4e-30100.00unnamed protein product [Vitis vinifera][more]
gi|661878012|emb|CDP18171.1|2.4e-30100.00unnamed protein product [Coffea canephora][more]
gi|359476741|ref|XP_003631881.1|2.4e-30100.00PREDICTED: 60S ribosomal protein L38 [Vitis vinifera][more]
gi|661891717|emb|CDP04642.1|2.4e-30100.00unnamed protein product [Coffea canephora][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.362160.1Cucsa.362160.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.362160Cucumber (Chinese Long) v3cgycucB556
Cucsa.362160Watermelon (97103) v2cgywmbB625
Cucsa.362160Wax gourdcgywgoB724
Cucsa.362160Cucurbita maxima (Rimu)cgycmaB1001
Cucsa.362160Cucurbita maxima (Rimu)cgycmaB1012
Cucsa.362160Cucurbita moschata (Rifu)cgycmoB1002
Cucsa.362160Cucurbita moschata (Rifu)cgycmoB1012
Cucsa.362160Wild cucumber (PI 183967)cgycpiB540
Cucsa.362160Cucumber (Chinese Long) v2cgycuB511
Cucsa.362160Melon (DHL92) v3.5.1cgymeB586
Cucsa.362160Watermelon (Charleston Gray)cgywcgB620
Cucsa.362160Watermelon (97103) v1cgywmB666
Cucsa.362160Cucurbita pepo (Zucchini)cgycpeB0945
Cucsa.362160Cucurbita pepo (Zucchini)cgycpeB0959
Cucsa.362160Bottle gourd (USVL1VR-Ls)cgylsiB583
Cucsa.362160Melon (DHL92) v3.6.1cgymedB586
Cucsa.362160Silver-seed gourdcarcgyB0103