Cucsa.362100 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.362100
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold03611 : 95882 .. 96322 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTTCTTCCCAAATATGCAGGATTCCAGAACCACGTAGAAGGAAAGTACCTTCAATACCTTTCTGATGGTTTTCTTAGGGGTAACCTACAATACTCTTCCGATCAAGCTTTGACCCCATTTACAAAGTTCGAGATTGTGCCCGACAAGGATGGTAAATATTGGCACATAAAATGTTGCTACAACGACAAGTACTTGGCCTCTTCCAACGACCACAATCGCTTCGTTACTCCCTTCGTTAGCAAGCCGAGTGAAAACGAATCCTCATCGCCATGCACATTGTTTAATTTCATCCCTGGTCCTACTATAGGGACTTACTATTTATTTGATGTCTTGCTTCAAACCTATGCACGTCGATGTACTAGTAGCAGAATTCATCCTGATGTTCTCACAACTAGATATAGACGCGATGAAAAACGACACGACGACAAATTAGTT

mRNA sequence

ATGTCGTTTCTTCCCAAATATGCAGGATTCCAGAACCACGTAGAAGGAAAGTACCTTCAATACCTTTCTGATGGTTTTCTTAGGGGTAACCTACAATACTCTTCCGATCAAGCTTTGACCCCATTTACAAAGTTCGAGATTGTGCCCGACAAGGATGGTAAATATTGGCACATAAAATGTTGCTACAACGACAAGTACTTGGCCTCTTCCAACGACCACAATCGCTTCGTTACTCCCTTCGTTAGCAAGCCGAGTGAAAACGAATCCTCATCGCCATGCACATTGTTTAATTTCATCCCTGGTCCTACTATAGGGACTTACTATTTATTTGATGTCTTGCTTCAAACCTATGCACGTCGATGTACTAGTAGCAGAATTCATCCTGATGTTCTCACAACTAGATATAGACGCGATGAAAAACGACACGACGACAAATTAGTT

Coding sequence (CDS)

ATGTCGTTTCTTCCCAAATATGCAGGATTCCAGAACCACGTAGAAGGAAAGTACCTTCAATACCTTTCTGATGGTTTTCTTAGGGGTAACCTACAATACTCTTCCGATCAAGCTTTGACCCCATTTACAAAGTTCGAGATTGTGCCCGACAAGGATGGTAAATATTGGCACATAAAATGTTGCTACAACGACAAGTACTTGGCCTCTTCCAACGACCACAATCGCTTCGTTACTCCCTTCGTTAGCAAGCCGAGTGAAAACGAATCCTCATCGCCATGCACATTGTTTAATTTCATCCCTGGTCCTACTATAGGGACTTACTATTTATTTGATGTCTTGCTTCAAACCTATGCACGTCGATGTACTAGTAGCAGAATTCATCCTGATGTTCTCACAACTAGATATAGACGCGATGAAAAACGACACGACGACAAATTAGTT

Protein sequence

MSFLPKYAGFQNHVEGKYLQYLSDGFLRGNLQYSSDQALTPFTKFEIVPDKDGKYWHIKCCYNDKYLASSNDHNRFVTPFVSKPSENESSSPCTLFNFIPGPTIGTYYLFDVLLQTYARRCTSSRIHPDVLTTRYRRDEKRHDDKLV

Homology

[Close]

BLAST of Cucsa.362100 vs. TrEMBL
Match: A0A0A0KEW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G082530 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 1.5e-81
Identity = 145/147 (98.64%), Postives = 145/147 (98.64%), Query Frame = 1


Query: 1   MSFLPKYAGFQNHVEGKYLQYLSDGFLRGNLQYSSDQALTPFTKFEIVPDKDGKYWHIKC 60
           MSFLPKYAGFQNHVEGKYLQYLSDGFLRGNLQYSSDQALTPFTKFEIVPDKDGKYWHIKC
Sbjct: 1   MSFLPKYAGFQNHVEGKYLQYLSDGFLRGNLQYSSDQALTPFTKFEIVPDKDGKYWHIKC 60

Query: 61  CYNDKYLASSNDHNRFVTPFVSKPSENESSSPCTLFNFIPGPTIGTYYLFDVLLQTYARR 120
           CYNDKYLASSNDHNRFVTPFVSKPSENESS PCTLFNFIPGPT GTYYLFDVLLQTYARR
Sbjct: 61  CYNDKYLASSNDHNRFVTPFVSKPSENESSWPCTLFNFIPGPTTGTYYLFDVLLQTYARR 120

Query: 121 CTSSRIHPDVLTTRYRRDEKRHDDKLV 148
           CTSSRIHPDVLTTRYRRDEKRHDDKLV
Sbjct: 121 CTSSRIHPDVLTTRYRRDEKRHDDKLV 147

[Close]

BLAST of Cucsa.362100 vs. TrEMBL
Match: A0A0A0K970_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G082030 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.1e-65
Identity = 117/147 (79.59%), Postives = 131/147 (89.12%), Query Frame = 1


Query: 1   MSFLPKYAGFQNHVEGKYLQYLSDGFLRGNLQYSSDQALTPFTKFEIVPDKDGKYWHIKC 60
           MSFLPKY GFQNH E KYLQYL+ GF +GNL +SSDQALTPFTKFEI PDK+GKYWHIKC
Sbjct: 1   MSFLPKYVGFQNHTERKYLQYLTHGFFKGNLYFSSDQALTPFTKFEIEPDKNGKYWHIKC 60

Query: 61  CYNDKYLASSNDHNRFVTPFVSKPSENESSSPCTLFNFIPGPTIGTYYLFDVLLQTYARR 120
           CYN+KYLASSND+NRFV PFVSKPSEN++S PCTLFN I GPT+GTYYLFDVLLQTYA R
Sbjct: 61  CYNNKYLASSNDYNRFVRPFVSKPSENDTSWPCTLFNIIQGPTVGTYYLFDVLLQTYACR 120

Query: 121 CTSSRIHPDVLTTRYRRDEKRHDDKLV 148
           CTS + HP+VLTTRY++DEK H DKL+
Sbjct: 121 CTSCKNHPNVLTTRYKQDEKHHGDKLL 147

[Close]

BLAST of Cucsa.362100 vs. TrEMBL
Match: A0A0A0KA07_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083530 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 9.6e-65
Identity = 117/147 (79.59%), Postives = 127/147 (86.39%), Query Frame = 1


Query: 1   MSFLPKYAGFQNHVEGKYLQYLSDGFLRGNLQYSSDQALTPFTKFEIVPDKDGKYWHIKC 60
           MSFLPKYAGFQNH E KYL+Y+ DGFL+G L+YSSDQALTPFTKFEIVPDKDGKYWHIKC
Sbjct: 1   MSFLPKYAGFQNHAERKYLEYVRDGFLKGKLKYSSDQALTPFTKFEIVPDKDGKYWHIKC 60

Query: 61  CYNDKYLASSNDHNRFVTPFVSKPSENESSSPCTLFNFIPGPTIGTYYLFDVLLQTYARR 120
           CYN KYLAS+ND NRFV PFVSKPSENESS PCTLFN IPGPTIGTYYLFDV++ TYA R
Sbjct: 61  CYNGKYLASTNDGNRFVAPFVSKPSENESSWPCTLFNIIPGPTIGTYYLFDVMIYTYACR 120

Query: 121 CTSSRIHPDVLTTRYRRDEKRHDDKLV 148
           CT  R+H DVLTT Y  +E R  DKL+
Sbjct: 121 CTDRRVHHDVLTTIYNLEEARDSDKLI 147

[Close]

BLAST of Cucsa.362100 vs. TrEMBL
Match: A0A0A0KEW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083560 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.1e-40
Identity = 79/140 (56.43%), Postives = 101/140 (72.14%), Query Frame = 1


Query: 4   LPKYAGFQNHVEGKYLQYLSDGFLRGNLQYSSDQALTPFTKFEIVPDKDGKYWHIKCCYN 63
           LPKY  F+N + GK+LQY+ +G L+G LQYSSD A++ F+KF +   K   Y+HI+CCYN
Sbjct: 3   LPKYGAFRNKIAGKFLQYIHEGSLKGYLQYSSDNAMSMFSKFTLEQSKTTNYFHIRCCYN 62

Query: 64  DKYLASSNDHNRFVTPFVSKPSENESSSPCTLFNFIPGPTIGTYYLFDVLLQTYARRCTS 123
           +KY AS+ D +  V+PFVSKPSENE S PCTLF F+  PT GTYYLFDV  Q+Y  RCT+
Sbjct: 63  NKYWASAKDGDHMVSPFVSKPSENEFSWPCTLFRFVQAPTEGTYYLFDVWRQSYVCRCTT 122

Query: 124 SRIHPDVLTTRYRRDEKRHD 144
           S+ H D LTTRY   +  +D
Sbjct: 123 SKSHEDCLTTRYGNQDHYYD 142

[Close]

BLAST of Cucsa.362100 vs. TrEMBL
Match: A0A0A0KD53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083030 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.2e-20
Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = 1


Query: 1  MSFLPKYAGFQNHVEGKYLQYLSDGFLRGNLQYSSDQALTPFTKFEIVPDKDGK 55
          MSFLPK+AGFQNH EGKYLQYLSDGFL GNLQYSSDQALTPFTKFEIVPDKD K
Sbjct: 1  MSFLPKFAGFQNHTEGKYLQYLSDGFLFGNLQYSSDQALTPFTKFEIVPDKDVK 54

[Close]

BLAST of Cucsa.362100 vs. NCBI nr
Match: gi|778722035|ref|XP_004145086.2| (PREDICTED: uncharacterized protein LOC105434387 [Cucumis sativus])

HSP 1 Score: 310.1 bits (793), Expect = 2.1e-81
Identity = 145/147 (98.64%), Postives = 145/147 (98.64%), Query Frame = 1


Query: 1   MSFLPKYAGFQNHVEGKYLQYLSDGFLRGNLQYSSDQALTPFTKFEIVPDKDGKYWHIKC 60
           MSFLPKYAGFQNHVEGKYLQYLSDGFLRGNLQYSSDQALTPFTKFEIVPDKDGKYWHIKC
Sbjct: 1   MSFLPKYAGFQNHVEGKYLQYLSDGFLRGNLQYSSDQALTPFTKFEIVPDKDGKYWHIKC 60

Query: 61  CYNDKYLASSNDHNRFVTPFVSKPSENESSSPCTLFNFIPGPTIGTYYLFDVLLQTYARR 120
           CYNDKYLASSNDHNRFVTPFVSKPSENESS PCTLFNFIPGPT GTYYLFDVLLQTYARR
Sbjct: 61  CYNDKYLASSNDHNRFVTPFVSKPSENESSWPCTLFNFIPGPTTGTYYLFDVLLQTYARR 120

Query: 121 CTSSRIHPDVLTTRYRRDEKRHDDKLV 148
           CTSSRIHPDVLTTRYRRDEKRHDDKLV
Sbjct: 121 CTSSRIHPDVLTTRYRRDEKRHDDKLV 147

[Close]

BLAST of Cucsa.362100 vs. NCBI nr
Match: gi|778711447|ref|XP_011656733.1| (PREDICTED: uncharacterized protein LOC101208849 [Cucumis sativus])

HSP 1 Score: 306.6 bits (784), Expect = 2.3e-80
Identity = 143/147 (97.28%), Postives = 144/147 (97.96%), Query Frame = 1


Query: 1   MSFLPKYAGFQNHVEGKYLQYLSDGFLRGNLQYSSDQALTPFTKFEIVPDKDGKYWHIKC 60
           MSFLPK+AGFQNH EGKYLQYLSDGFL GNLQYSSDQALTPFTKFEIVPDKDGKYWHIKC
Sbjct: 1   MSFLPKFAGFQNHTEGKYLQYLSDGFLFGNLQYSSDQALTPFTKFEIVPDKDGKYWHIKC 60

Query: 61  CYNDKYLASSNDHNRFVTPFVSKPSENESSSPCTLFNFIPGPTIGTYYLFDVLLQTYARR 120
           CYNDKYLASSNDHNRFVTPFVSKPSENESSSPCTLFNFIPGPT GTYYLFDVLLQTYARR
Sbjct: 61  CYNDKYLASSNDHNRFVTPFVSKPSENESSSPCTLFNFIPGPTTGTYYLFDVLLQTYARR 120

Query: 121 CTSSRIHPDVLTTRYRRDEKRHDDKLV 148
           CTSSRIHPDVLTTRYRRDEKRHDDKLV
Sbjct: 121 CTSSRIHPDVLTTRYRRDEKRHDDKLV 147

[Close]

BLAST of Cucsa.362100 vs. NCBI nr
Match: gi|659120128|ref|XP_008460028.1| (PREDICTED: uncharacterized protein LOC103498965 [Cucumis melo])

HSP 1 Score: 289.7 bits (740), Expect = 3.0e-75
Identity = 134/147 (91.16%), Postives = 138/147 (93.88%), Query Frame = 1


Query: 1   MSFLPKYAGFQNHVEGKYLQYLSDGFLRGNLQYSSDQALTPFTKFEIVPDKDGKYWHIKC 60
           MSFLPKYAGFQNH EGKYLQY+ DG LRGNLQYSSDQALTPFTKFEIVPDKDGKYWHIKC
Sbjct: 1   MSFLPKYAGFQNHAEGKYLQYIPDGHLRGNLQYSSDQALTPFTKFEIVPDKDGKYWHIKC 60

Query: 61  CYNDKYLASSNDHNRFVTPFVSKPSENESSSPCTLFNFIPGPTIGTYYLFDVLLQTYARR 120
           CYNDKYLASS+DHNRFVTPFVSKPSENESS PCT+FN I GPT GTYYLFDV LQTYARR
Sbjct: 61  CYNDKYLASSDDHNRFVTPFVSKPSENESSRPCTMFNIISGPTTGTYYLFDVSLQTYARR 120

Query: 121 CTSSRIHPDVLTTRYRRDEKRHDDKLV 148
           CTSSRIHP+VLTTRYRRDE RHDDKLV
Sbjct: 121 CTSSRIHPNVLTTRYRRDENRHDDKLV 147

[Close]

BLAST of Cucsa.362100 vs. NCBI nr
Match: gi|659120442|ref|XP_008460196.1| (PREDICTED: uncharacterized protein LOC103499081 [Cucumis melo])

HSP 1 Score: 285.4 bits (729), Expect = 5.6e-74
Identity = 132/147 (89.80%), Postives = 138/147 (93.88%), Query Frame = 1


Query: 1   MSFLPKYAGFQNHVEGKYLQYLSDGFLRGNLQYSSDQALTPFTKFEIVPDKDGKYWHIKC 60
           MSFLPK+AGFQNH EGKYLQ+L DGFLRG LQYSSDQALTPFTKFEIVPDKDGKYWHIKC
Sbjct: 1   MSFLPKFAGFQNHAEGKYLQFLPDGFLRGVLQYSSDQALTPFTKFEIVPDKDGKYWHIKC 60

Query: 61  CYNDKYLASSNDHNRFVTPFVSKPSENESSSPCTLFNFIPGPTIGTYYLFDVLLQTYARR 120
           CYNDKYLASS+DHNRFVTPFVSKPSENESS PCT+FN + GPT GTYYLFDV LQTYARR
Sbjct: 61  CYNDKYLASSDDHNRFVTPFVSKPSENESSRPCTMFNIMSGPTTGTYYLFDVSLQTYARR 120

Query: 121 CTSSRIHPDVLTTRYRRDEKRHDDKLV 148
           CTSSRIHP+VLTTRYRRDE RHDDKLV
Sbjct: 121 CTSSRIHPNVLTTRYRRDENRHDDKLV 147

[Close]

BLAST of Cucsa.362100 vs. NCBI nr
Match: gi|778722033|ref|XP_004153114.2| (PREDICTED: uncharacterized protein LOC101207511 [Cucumis sativus])

HSP 1 Score: 257.3 bits (656), Expect = 1.6e-65
Identity = 117/147 (79.59%), Postives = 131/147 (89.12%), Query Frame = 1


Query: 1   MSFLPKYAGFQNHVEGKYLQYLSDGFLRGNLQYSSDQALTPFTKFEIVPDKDGKYWHIKC 60
           MSFLPKY GFQNH E KYLQYL+ GF +GNL +SSDQALTPFTKFEI PDK+GKYWHIKC
Sbjct: 1   MSFLPKYVGFQNHTERKYLQYLTHGFFKGNLYFSSDQALTPFTKFEIEPDKNGKYWHIKC 60

Query: 61  CYNDKYLASSNDHNRFVTPFVSKPSENESSSPCTLFNFIPGPTIGTYYLFDVLLQTYARR 120
           CYN+KYLASSND+NRFV PFVSKPSEN++S PCTLFN I GPT+GTYYLFDVLLQTYA R
Sbjct: 61  CYNNKYLASSNDYNRFVRPFVSKPSENDTSWPCTLFNIIQGPTVGTYYLFDVLLQTYACR 120

Query: 121 CTSSRIHPDVLTTRYRRDEKRHDDKLV 148
           CTS + HP+VLTTRY++DEK H DKL+
Sbjct: 121 CTSCKNHPNVLTTRYKQDEKHHGDKLL 147

The following BLAST results are available for this feature:

BLAST of Cucsa.362100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEW1_CUCSA	1.5e-81	98.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G082530 PE=4 SV=1	[more]
A0A0A0K970_CUCSA	1.1e-65	79.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G082030 PE=4 SV=1	[more]
A0A0A0KA07_CUCSA	9.6e-65	79.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083530 PE=4 SV=1	[more]
A0A0A0KEW7_CUCSA	2.1e-40	56.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083560 PE=4 SV=1	[more]
A0A0A0KD53_CUCSA	4.2e-20	92.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083030 PE=4 SV=1	[more]

BLAST of Cucsa.362100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778722035\|ref\|XP_004145086.2\|	2.1e-81	98.64	PREDICTED: uncharacterized protein LOC105434387 [Cucumis sativus]	[more]
gi\|778711447\|ref\|XP_011656733.1\|	2.3e-80	97.28	PREDICTED: uncharacterized protein LOC101208849 [Cucumis sativus]	[more]
gi\|659120128\|ref\|XP_008460028.1\|	3.0e-75	91.16	PREDICTED: uncharacterized protein LOC103498965 [Cucumis melo]	[more]
gi\|659120442\|ref\|XP_008460196.1\|	5.6e-74	89.80	PREDICTED: uncharacterized protein LOC103499081 [Cucumis melo]	[more]
gi\|778722033\|ref\|XP_004153114.2\|	1.6e-65	79.59	PREDICTED: uncharacterized protein LOC101207511 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008998	Agglutinin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009405	pathogenesis
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.362100.1	Cucsa.362100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008998	Agglutinin domain	PFAM	PF07468	Agglutinin	coord: 4..123 score: 4.7
IPR008998	Agglutinin domain	unknown	SSF50382	Agglutinin	coord: 4..131 score: 1.2
None	No IPR available	GENE3D	G3DSA:2.80.10.50		coord: 3..140 score: 1.6
None	No IPR available	PANTHER	PTHR39244	FAMILY NOT NAMED	coord: 1..100 score: 3.7
None	No IPR available	PANTHER	PTHR39244:SF1	SUBFAMILY NOT NAMED	coord: 1..100 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.362100	CmaCh17G006140	Cucurbita maxima (Rimu)	cgycmaB1001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.362100	Watermelon (Charleston Gray)	cgywcgB620
Cucsa.362100	Watermelon (97103) v1	cgywmB666
Cucsa.362100	Cucurbita pepo (Zucchini)	cgycpeB0945
Cucsa.362100	Cucurbita pepo (Zucchini)	cgycpeB0959
Cucsa.362100	Bottle gourd (USVL1VR-Ls)	cgylsiB583
Cucsa.362100	Melon (DHL92) v3.6.1	cgymedB586
Cucsa.362100	Silver-seed gourd	carcgyB0103
Cucsa.362100	Cucumber (Chinese Long) v3	cgycucB556
Cucsa.362100	Watermelon (97103) v2	cgywmbB625
Cucsa.362100	Wax gourd	cgywgoB724
Cucsa.362100	Cucurbita maxima (Rimu)	cgycmaB1012
Cucsa.362100	Cucurbita moschata (Rifu)	cgycmoB1002
Cucsa.362100	Cucurbita moschata (Rifu)	cgycmoB1012
Cucsa.362100	Wild cucumber (PI 183967)	cgycpiB540
Cucsa.362100	Cucumber (Chinese Long) v2	cgycuB511
Cucsa.362100	Melon (DHL92) v3.5.1	cgymeB586