Cucsa.359850 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.359850
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionAcyltransferase 3
Locationscaffold03588 : 647856 .. 648392 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTTGCAAGGTCTTGAAGCATAACAGAATTAACACAGTTTCATTATCTTCTCTTCTTGTTCTTCAAATTTGATATCATTCATAGTTGGTAAGCTCGTGCATGAACTGATTCAAATACGCCGAGATTTCTTCAATTGCATATGTATTAAACAGCTTGCCTAAAGTTGGTCTGTCACTTCCGAGCTTGCAGAAAAGTAGCAGTCTAAGATACATTTGTGCCAACGGGTACTTAGAAGTTAGAACTTGTAGTAGAGCATAAAAACATTTTCCCCTCAATCATTGTACTTAAAAAATTGTTAGCTTTCTTTTATAAACACACATAGGTTCTCACATATACATGAGACCATGACCCACATAAAGAAACACATCGAGGTGGGAATAAATCCTGTGGAAGTAACGAATTCAAAATCTGAGATTGCCCCAATAAATCCTGTGGACAATTCAACTTTTCGGAGGAACCAGGTGAGATTGCCCCAAGTTACTCCAGAGGAAATCCAGACGAGGTTATTGAAAACTTAAGAAGACTGTTTTATATTT

mRNA sequence

GCTTTGCAAGGTCTTGAAGCATAACAGAATTAACACAGTTTCATTATCTTCTCTTCTTGTTCTTCAAATTTGATATCATTCATAGTTGGTAAGCTCGTGCATGAACTGATTCAAATACGCCGAGATTTCTTCAATTGCATATGTATTAAACAGCTTGCCTAAAGTTGGTCTGTCACTTCCGAGCTTGCAGAAAAGTAGCAGTCTAAGATACATTTGTGCCAACGGGTACTTAGAAGTTAGAACTTGTAGTAGAGCATAAAAACATTTTCCCCTCAATCATTGTACTTAAAAAATTGTTAGCTTTCTTTTATAAACACACATAGGTTCTCACATATACATGAGACCATGACCCACATAAAGAAACACATCGAGGTGGGAATAAATCCTGTGGAAGTAACGAATTCAAAATCTGAGATTGCCCCAATAAATCCTGTGGACAATTCAACTTTTCGGAGGAACCAGGTGAGATTGCCCCAAGTTACTCCAGAGGAAATCCAGACGAGGTTATTGAAAACTTAAGAAGACTGTTTTATATTT

Coding sequence (CDS)

ATGACCCACATAAAGAAACACATCGAGGTGGGAATAAATCCTGTGGAAGTAACGAATTCAAAATCTGAGATTGCCCCAATAAATCCTGTGGACAATTCAACTTTTCGGAGGAACCAGGTGAGATTGCCCCAAGTTACTCCAGAGGAAATCCAGACGAGGTTATTGAAAACTTAA

Protein sequence

MTHIKKHIEVGINPVEVTNSKSEIAPINPVDNSTFRRNQVRLPQVTPEEIQTRLLKT*
Homology
[Close]
BLAST of Cucsa.359850 vs. TrEMBL
Match: A0A0A0K6U2_CUCSA (Acyltransferase 3 OS=Cucumis sativus GN=Csa_7G448070 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 

Query: 1   MTHIKKHIEVGINPVEVTNSKSEIAPINPVDNSTFRRNQVRLPQVTPEEIQTRLLKT 58
           MTHIKKHIEVGINPVEVTNSKSEIAPINPVDNSTFRRNQVRLPQVTPEEIQTRLLKT
Sbjct: 85  MTHIKKHIEVGINPVEVTNSKSEIAPINPVDNSTFRRNQVRLPQVTPEEIQTRLLKT 141

[Close]
BLAST of Cucsa.359850 vs. NCBI nr
Match: gi|700190212|gb|KGN45445.1| (Acyltransferase 3 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 1.8e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 

Query: 1   MTHIKKHIEVGINPVEVTNSKSEIAPINPVDNSTFRRNQVRLPQVTPEEIQTRLLKT 58
           MTHIKKHIEVGINPVEVTNSKSEIAPINPVDNSTFRRNQVRLPQVTPEEIQTRLLKT
Sbjct: 85  MTHIKKHIEVGINPVEVTNSKSEIAPINPVDNSTFRRNQVRLPQVTPEEIQTRLLKT 141

The following BLAST results are available for this feature:
BLAST of Cucsa.359850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6U2_CUCSA1.2e-23100.00Acyltransferase 3 OS=Cucumis sativus GN=Csa_7G448070 PE=4 SV=1[more]
BLAST of Cucsa.359850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190212|gb|KGN45445.1|1.8e-23100.00Acyltransferase 3 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016746 transferase activity, transferring acyl groups
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.359850.1Cucsa.359850.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.359850Csa7G448070Cucumber (Chinese Long) v2cgycuB508
Cucsa.359850CSPI07G22120Wild cucumber (PI 183967)cgycpiB535
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.359850Cucurbita pepo (Zucchini)cgycpeB0935
Cucsa.359850Cucurbita pepo (Zucchini)cgycpeB0937
Cucsa.359850Cucurbita pepo (Zucchini)cgycpeB0943
Cucsa.359850Bottle gourd (USVL1VR-Ls)cgylsiB577
Cucsa.359850Bottle gourd (USVL1VR-Ls)cgylsiB580
Cucsa.359850Melon (DHL92) v3.6.1cgymedB580
Cucsa.359850Melon (DHL92) v3.6.1cgymedB584
Cucsa.359850Silver-seed gourdcarcgyB0146
Cucsa.359850Silver-seed gourdcarcgyB0680
Cucsa.359850Silver-seed gourdcarcgyB0869
Cucsa.359850Cucumber (Chinese Long) v3cgycucB545
Cucsa.359850Cucumber (Chinese Long) v3cgycucB547
Cucsa.359850Cucumber (Chinese Long) v3cgycucB550
Cucsa.359850Watermelon (97103) v2cgywmbB616
Cucsa.359850Watermelon (97103) v2cgywmbB619
Cucsa.359850Wax gourdcgywgoB716
Cucsa.359850Wax gourdcgywgoB719
Cucsa.359850Cucumber (Gy14) v1cgycgyB093
Cucsa.359850Cucurbita maxima (Rimu)cgycmaB0981
Cucsa.359850Cucurbita maxima (Rimu)cgycmaB0983
Cucsa.359850Cucurbita maxima (Rimu)cgycmaB0988
Cucsa.359850Cucurbita moschata (Rifu)cgycmoB0984
Cucsa.359850Cucurbita moschata (Rifu)cgycmoB0985
Cucsa.359850Cucurbita moschata (Rifu)cgycmoB0990
Cucsa.359850Wild cucumber (PI 183967)cgycpiB533
Cucsa.359850Cucumber (Chinese Long) v2cgycuB506
Cucsa.359850Melon (DHL92) v3.5.1cgymeB579
Cucsa.359850Melon (DHL92) v3.5.1cgymeB583
Cucsa.359850Watermelon (Charleston Gray)cgywcgB610
Cucsa.359850Watermelon (Charleston Gray)cgywcgB614
Cucsa.359850Watermelon (97103) v1cgywmB647
Cucsa.359850Watermelon (97103) v1cgywmB650