Cucsa.358540 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.358540
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Single-stranded nucleic acid binding R3H protein
Location	scaffold03586 : 135445 .. 138580 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCATCTTCCATACGCAACCCGACAACCGAACCTCTAAACAACTTGGCTCTCTGTTCTTGTGGGTAAGTTTCAATTTCGGATAACCATTCTTAAGTTTTCTATTCTTTTGCGGGGATAAGAACATTTCTCCACATTTCTCTCTCTGTTTCTTCAAGAACAAGAACAACTACAAGTAGTGAGATCGAACCATGGATTCCTCTTCACCTTCTTCCATTGATGCCCTTCCAGATGGGCTCAAAGATAAAGTGTCAACGGTTGACCCCTTTTTGATCGAAGCCCTTCACAACCCTCGACACCGTCTAACCAGTCAGTATTTTCTTTTATTCTAATTTTGGGTTTTGTTCAGCTTCAAGTTTAACAATCTTGTTTCCTCTTATTCATTTCCCTCTTTCTTGTTGGATGACATCTTTTAGGGTTTTTATTTTTATGAACTTCCAACTGTGGTTGGTAATTGTGAATCTGTTATTGTATTTGTTTAATTCTCAACAAAGGGGTTGTAGCTTTTGTCTCAACTTTGATGCCACTTACATAGGTTTTGTCTTAGCTTTAATGGGCATTTGCTAGTTTTAGTTCAGATTAAGTAAGTTTTTGCCTCCATGGAACTAGAAGAGAACCCTGTTCGCTAACTATTTGGTTTTTAATTCTCAATTTTTGAAAATTAAGTCTATAAATACTCATCCAACCTTTCTTATTCTTTACCAATGGTTTAAAAACCATACCAGAATTTGAAAACTTGTTTTTGTTTTTCGAGTTCAACTCTTTTCAAATTTTGGCATGGTTTTTAAACCACCAGTAAAACAGTAACCTAAGAGTTCAACTCTTTTAAGAAATTGAAAGGATATAAGTTAATTTTCAAAATTAAAAAACACCACATGGTTATCAAGCGAGGTCTAAGTTTCTTTTTGTTGATATTATTCCCTTTTTTCAATATACTCTGCTCATTGTAGTTTATTTTTACCATAGTTCTGCGGATGGAACTTGATATTCAAAGGTTCTTGCAAAACCAAGATCAGCAGTTGTTTGAGTTCCAACACTTCCCTACTTCGTACCTTCGACTCGCAGCTCATCGTGTTGCTCAACACTATGGTCTGCAGACAATGGTTCAGGATAATGGTATAGATGGACAAGGGAGAATTTTGGTGAAGAAAACTGTCGAAGCTAGATTTCCAACCATTTGCTTATCCCAAATACCTGCAAAACAATTGGCTGATGATAAACCTGGGCACGTTAAAATTGCTATTAGGCCGAGGCCAAATAAGTTGTCTGATGAAGCAGGTAATTGTATGGCTAAGCAAAGTCATGCTAGGACTGTGGAGCAGAGGAAGGAAGAGTACGATAAGGCACGTGCTCGAATATTCAGCAGCCAAGGTAGTATTGGTCCAGTGGAGGTATTGCCCCATACTGTCATCGAGGGGCTTGGTATACCTCCAAACAGAGATAGGGTGGAAGATTGTCGAGTGAACGATGTTGAGAAGTATACAAGTGTTACAGATGCTGGGAATGGGGCTTCTTCTCGGGTTGCCATTTTAAGAGATAGGGAAAAGGATCTTAGTGACCCAGATTATGATCGGAGTTATGAAAGGTAATGGCTCCTTTGAAACAGACTACACCTATGCTGCTAGCTGATAGTGCCATTATTACATATGCTGTTATTGGTTTCTCCCTATATGATGAGACCATTTTAGCTGATAGTTTTTCAAAACCTCAATTCTTATCAAACTTATTATATTCATTATGCTATGTATTATCTGAATGGTTGGGTATCTAAATGCATATTAATCAACAACTTGTTCTTCATTTGTAGGTATGTTAAGAGCCTTCCAATTAATCTGACTCCGAGCTTGAATTTTGCTCCTTTCACCGTGCAAAACATCACACCTTCATTTACCGGTTACCATGTACCAAGGAACGAGGTTTCACTGGGCTATGTTTCTCCTTCACCAATCAAGACTGTAGGATTGAATCAGGTGTCTAGACCCTCGGCCAATGTGCCGTGGCCATGTGCAGGGATGCCATACCCACATACTGCTTTTCAGGTACATTTAAGATCTTTACAGTACACAGCCTCTGTTCTATCACTTGAATTGATTATTTGGTAAATCTAAAAAGTTACATCACACAACTTGGGTTCATACTAGTGTTTACAAAATTCACTTGGATCGATCTTGGTTAATCTAGAAACAATATGGAGTAGCTACGAAAGTAATTTGGCAATGCTACATAAAACTGCTTTTGCTAATTTTATCCGAAGATCTCCCCCTTCTTCGAATTTGACCATAAAATAGTTGGATGATGTTCTCCCTTTGCTATTGTACCCCAAAGGTTAGGACACTTGGAACTTACACTTGGAACTTGCTCCTTCTCATCAATCTTATTATAACAGTGATGGAGTAATAGATGATAGGTTTTTCTCTCAACTCACGACATAAAATGCACCTATTTGATCAAAAAGATGAATTCGGTACACTGATGAATTCATTGCTCCAAAAATCATTTTAAAAAATAACCCTTCTAAACACACAATACCTGTCTGAAAGTCTATCTTCCAACTGTCTTATCTTTCACAGTTGATTCAATAGTGTTACTGCCTTCTACTCGCTTGCTTGCTTTATTTCTTTAGTGGAGATACATAAACTGTTTTATTCCTTCTAATCTCTTCTAACTAAATTGTCTAAACGGAAGCTACGATCATTTCCGTCCAAACTTTTATTCTAAAAACCCGTATTAGAAACTTTCTAAACTTAACTCACAACTTCATTTCATCATTTACGGTTGATTCAGTAAGATCGTCACGTCCTACCCTCTCCTTGTTCGACCACTAGGACGTTTTAAAGAAAACTAGAATCATTGTCTATTCCAAACCTTGTTTGTACAAACGTCATTTGATTCTTACTTTTTCTTCAATTTTTGCAATTACTTTGTGTTGACTTATTTTTGGTGTTATTGCAGGCTCCATTGTATCAACAATCTTTGAGTTTTGATTATTTGCAATACAATTGAATACAGCAGTTAGGAAATAGTGTTAATTAAAAACTGATTTACTCAGCTAATTATATACTCATTTTGTTGGTTCCAAAACCTCCCGTTAGAATCAATTGTTTTAAATTAAACTCTTTTATTTATACTTACTGTCCT

mRNA sequence

CTCATCTTCCATACGCAACCCGACAACCGAACCTCTAAACAACTTGGCTCTCTGTTCTTGTGGAACAAGAACAACTACAAGTAGTGAGATCGAACCATGGATTCCTCTTCACCTTCTTCCATTGATGCCCTTCCAGATGGGCTCAAAGATAAAGTGTCAACGGTTGACCCCTTTTTGATCGAAGCCCTTCACAACCCTCGACACCGTCTAACCATTCTGCGGATGGAACTTGATATTCAAAGGTTCTTGCAAAACCAAGATCAGCAGTTGTTTGAGTTCCAACACTTCCCTACTTCGTACCTTCGACTCGCAGCTCATCGTGTTGCTCAACACTATGGTCTGCAGACAATGGTTCAGGATAATGGTATAGATGGACAAGGGAGAATTTTGGTGAAGAAAACTGTCGAAGCTAGATTTCCAACCATTTGCTTATCCCAAATACCTGCAAAACAATTGGCTGATGATAAACCTGGGCACGTTAAAATTGCTATTAGGCCGAGGCCAAATAAGTTGTCTGATGAAGCAGGTAATTGTATGGCTAAGCAAAGTCATGCTAGGACTGTGGAGCAGAGGAAGGAAGAGTACGATAAGGCACGTGCTCGAATATTCAGCAGCCAAGGTAGTATTGGTCCAGTGGAGGTATTGCCCCATACTGTCATCGAGGGGCTTGGTATACCTCCAAACAGAGATAGGGTGGAAGATTGTCGAGTGAACGATGTTGAGAAGTATACAAGTGTTACAGATGCTGGGAATGGGGCTTCTTCTCGGGTTGCCATTTTAAGAGATAGGGAAAAGGATCTTAGTGACCCAGATTATGATCGGAGTTATGAAAGGTATGTTAAGAGCCTTCCAATTAATCTGACTCCGAGCTTGAATTTTGCTCCTTTCACCGTGCAAAACATCACACCTTCATTTACCGGTTACCATGTACCAAGGAACGAGGTTTCACTGGGCTATGTTTCTCCTTCACCAATCAAGACTGTAGGATTGAATCAGGTGTCTAGACCCTCGGCCAATGTGCCGTGGCCATGTGCAGGGATGCCATACCCACATACTGCTTTTCAGGCTCCATTGTATCAACAATCTTTGAGTTTTGATTATTTGCAATACAATTGAATACAGCAGTTAGGAAATAGTGTTAATTAAAAACTGATTTACTCAGCTAATTATATACTCATTTTGTTGGTTCCAAAACCTCCCGTTAGAATCAATTGTTTTAAATTAAACTCTTTTATTTATACTTACTGTCCT

Coding sequence (CDS)

ATGGATTCCTCTTCACCTTCTTCCATTGATGCCCTTCCAGATGGGCTCAAAGATAAAGTGTCAACGGTTGACCCCTTTTTGATCGAAGCCCTTCACAACCCTCGACACCGTCTAACCATTCTGCGGATGGAACTTGATATTCAAAGGTTCTTGCAAAACCAAGATCAGCAGTTGTTTGAGTTCCAACACTTCCCTACTTCGTACCTTCGACTCGCAGCTCATCGTGTTGCTCAACACTATGGTCTGCAGACAATGGTTCAGGATAATGGTATAGATGGACAAGGGAGAATTTTGGTGAAGAAAACTGTCGAAGCTAGATTTCCAACCATTTGCTTATCCCAAATACCTGCAAAACAATTGGCTGATGATAAACCTGGGCACGTTAAAATTGCTATTAGGCCGAGGCCAAATAAGTTGTCTGATGAAGCAGGTAATTGTATGGCTAAGCAAAGTCATGCTAGGACTGTGGAGCAGAGGAAGGAAGAGTACGATAAGGCACGTGCTCGAATATTCAGCAGCCAAGGTAGTATTGGTCCAGTGGAGGTATTGCCCCATACTGTCATCGAGGGGCTTGGTATACCTCCAAACAGAGATAGGGTGGAAGATTGTCGAGTGAACGATGTTGAGAAGTATACAAGTGTTACAGATGCTGGGAATGGGGCTTCTTCTCGGGTTGCCATTTTAAGAGATAGGGAAAAGGATCTTAGTGACCCAGATTATGATCGGAGTTATGAAAGGTATGTTAAGAGCCTTCCAATTAATCTGACTCCGAGCTTGAATTTTGCTCCTTTCACCGTGCAAAACATCACACCTTCATTTACCGGTTACCATGTACCAAGGAACGAGGTTTCACTGGGCTATGTTTCTCCTTCACCAATCAAGACTGTAGGATTGAATCAGGTGTCTAGACCCTCGGCCAATGTGCCGTGGCCATGTGCAGGGATGCCATACCCACATACTGCTTTTCAGGCTCCATTGTATCAACAATCTTTGAGTTTTGATTATTTGCAATACAATTGA

Protein sequence

MDSSSPSSIDALPDGLKDKVSTVDPFLIEALHNPRHRLTILRMELDIQRFLQNQDQQLFEFQHFPTSYLRLAAHRVAQHYGLQTMVQDNGIDGQGRILVKKTVEARFPTICLSQIPAKQLADDKPGHVKIAIRPRPNKLSDEAGNCMAKQSHARTVEQRKEEYDKARARIFSSQGSIGPVEVLPHTVIEGLGIPPNRDRVEDCRVNDVEKYTSVTDAGNGASSRVAILRDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNITPSFTGYHVPRNEVSLGYVSPSPIKTVGLNQVSRPSANVPWPCAGMPYPHTAFQAPLYQQSLSFDYLQYN*

Homology

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BLAST of Cucsa.358540 vs. Swiss-Prot
Match: R3HD1_HUMAN (R3H domain-containing protein 1 OS=Homo sapiens GN=R3HDM1 PE=1 SV=3)

HSP 1 Score: 69.7 bits (169), Expect = 7.0e-11
Identity = 53/154 (34.42%), Postives = 81/154 (52.60%), Query Frame = 1


Query: 26  FLIEAL-HNPRHRLTILRMELDIQRFLQNQDQQLFEFQHFPTSYLRLAAHRVAQHYGLQT 85
           FL+  L +NPR R+ +L++E +I  F+ N +    +F    TSY R+  HRVA ++GL  
Sbjct: 156 FLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPM-TSYHRMLLHRVAAYFGL-- 215

Query: 86  MVQDNGIDGQGR-ILVKKTVEARFPTICLSQIPAKQLADDK-PGHVKIAIRPRPNKLSDE 145
              D+ +D  G+ ++V KT   R P     Q   + + DDK     K  I  R N   D+
Sbjct: 216 ---DHNVDQSGKSVIVNKTSNTRIP----DQKFNEHIKDDKGEDFQKRYILKRDNSSFDK 275

Query: 146 AGNCMA----KQSHARTVEQRKEEYDKARARIFS 173
             N M         ++++E+R+EEY +AR RIFS
Sbjct: 276 DDNQMRIRLKDDRRSKSIEEREEEYQRARDRIFS 299

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BLAST of Cucsa.358540 vs. Swiss-Prot
Match: R3HD2_MOUSE (R3H domain-containing protein 2 OS=Mus musculus GN=R3hdm2 PE=1 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 5.0e-09
Identity = 48/158 (30.38%), Postives = 83/158 (52.53%), Query Frame = 1


Query: 26  FLIEALH-NPRHRLTILRMELDIQRFLQNQDQQLFEFQHFP--TSYLRLAAHRVAQHYGL 85
           FL+  L  NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRVA ++G+
Sbjct: 157 FLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM 216

Query: 86  QTMVQDNGIDGQGR-ILVKKTVEARFPTICLSQIPAKQLADDKPGHVKIA-IRPRPNKLS 145
                D+ +D  G+ +++ KT   R P     Q  ++ + D+K    +   I  R +   
Sbjct: 217 -----DHNVDQTGKAVIINKTSSTRIP----EQRFSEHIKDEKNTEFQQRFILKRDDASM 276

Query: 146 DEAGNCM----AKQSHARTVEQRKEEYDKARARIFSSQ 175
           D   N M         ++++E+R+EEY + R RIF+ +
Sbjct: 277 DRDDNQMRVPLQDGRRSKSIEEREEEYQRVRERIFARE 302

[Close]

BLAST of Cucsa.358540 vs. Swiss-Prot
Match: R3HD2_BOVIN (R3H domain-containing protein 2 OS=Bos taurus GN=R3HDM2 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-08
Identity = 47/158 (29.75%), Postives = 83/158 (52.53%), Query Frame = 1


Query: 26  FLIEALH-NPRHRLTILRMELDIQRFLQNQDQQLFEFQHFP--TSYLRLAAHRVAQHYGL 85
           FL+  L  NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRVA ++G+
Sbjct: 157 FLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM 216

Query: 86  QTMVQDNGIDGQGR-ILVKKTVEARFPTICLSQIPAKQLADDKPGHVKIA-IRPRPNKLS 145
                D+ +D  G+ +++ KT   R P     Q  ++ + D+K    +   I  R +   
Sbjct: 217 -----DHNVDQTGKAVIINKTSNTRIP----EQRFSEHIKDEKNTEFQQRFILKRDDASM 276

Query: 146 DEAGN----CMAKQSHARTVEQRKEEYDKARARIFSSQ 175
           D   N     +     ++++E+R+EEY + R RIF+ +
Sbjct: 277 DRDDNQIRVPLQDGRRSKSIEEREEEYQRVRERIFARE 302

[Close]

BLAST of Cucsa.358540 vs. TrEMBL
Match: A0A0A0L247_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G420720 PE=4 SV=1)

HSP 1 Score: 656.8 bits (1693), Expect = 1.5e-185
Identity = 324/326 (99.39%), Postives = 324/326 (99.39%), Query Frame = 1


Query: 1   MDSSSPSSIDALPDGLKDKVSTVDPFLIEALHNPRHRLTILRMELDIQRFLQNQDQQLFE 60
           MDSSSPSSIDALPDGLKDKVSTVDPFLIEALHNPRHRLTILRMELDIQRFLQNQDQQLFE
Sbjct: 1   MDSSSPSSIDALPDGLKDKVSTVDPFLIEALHNPRHRLTILRMELDIQRFLQNQDQQLFE 60

Query: 61  FQHFPTSYLRLAAHRVAQHYGLQTMVQDNGIDGQGRILVKKTVEARFPTICLSQIPAKQL 120
           FQHFPTSYLRLAAHRVAQHYGLQTMVQDNGIDGQGRILVKKTVEARFPTICLSQIPAKQL
Sbjct: 61  FQHFPTSYLRLAAHRVAQHYGLQTMVQDNGIDGQGRILVKKTVEARFPTICLSQIPAKQL 120

Query: 121 ADDKPGHVKIAIRPRPNKLSDEAGNCMAKQSHARTVEQRKEEYDKARARIFSSQGSIGPV 180
           ADDKPGHVKIAIRPRPNKLSDEAGNCMAKQSHARTVEQRKEEYDKARARIFSSQGSIGPV
Sbjct: 121 ADDKPGHVKIAIRPRPNKLSDEAGNCMAKQSHARTVEQRKEEYDKARARIFSSQGSIGPV 180

Query: 181 EVLPHTVIEGLGIPPNRDRVEDCRVNDVEKYTSVTDAGNGASSRVAILRDREKDLSDPDY 240
           EVLPHTVIEGLGIPPNRDRVEDCRVNDVEKYTSVTDAGNGASSRVAILRDREKDLSDPDY
Sbjct: 181 EVLPHTVIEGLGIPPNRDRVEDCRVNDVEKYTSVTDAGNGASSRVAILRDREKDLSDPDY 240

Query: 241 DRSYERYVKSLPINLTPSLNFAPFTVQNITPSFTGYHVPRNEVSLGYVSPSPIKTVGLNQ 300
           DRSYERYVKSLPINLTPSLNFAPFTVQNITPSFTGYHVPRNEVSLGYVSPSPIKTVGLNQ
Sbjct: 241 DRSYERYVKSLPINLTPSLNFAPFTVQNITPSFTGYHVPRNEVSLGYVSPSPIKTVGLNQ 300

Query: 301 VSRPSANVPWPCAGMPYPHTAFQVHL 327
           VSRPSANVPWPCAGMPYPHTAFQ  L
Sbjct: 301 VSRPSANVPWPCAGMPYPHTAFQAPL 326

[Close]

BLAST of Cucsa.358540 vs. TrEMBL
Match: A5AMT9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g00890 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 7.2e-87
Identity = 190/337 (56.38%), Postives = 222/337 (65.88%), Query Frame = 1


Query: 1   MDSSS-PSSIDALPDGLKDKVSTVDPFLIEALHNPRHRLTILRMELDIQRFLQNQDQQLF 60
           MDS+   + + A P    DK S VDPFL+EAL NPRHRLTILRMELDIQRFLQN DQQ F
Sbjct: 1   MDSAPYANDVSATPG---DKESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQQF 60

Query: 61  EFQHFPTSYLRLAAHRVAQHYGLQTMVQDNGIDG-QGRILVKKTVEARFPTICLSQIPAK 120
           EFQHFPTSYLRLAAHRVA HYGLQTMVQDN +DG   RI+V KT E+R P ICLS+IPAK
Sbjct: 61  EFQHFPTSYLRLAAHRVALHYGLQTMVQDNSVDGLANRIVVMKTAESRCPAICLSEIPAK 120

Query: 121 QLADDKPGHVKIAIRPRPNKLS-DEAGNCMAKQSHARTVEQRKEEYDKARARIFSSQGSI 180
           Q  ++KP H+KIAIR RPNK S +E      K+S  RTVE+RKEEYDKARARIFS+  S 
Sbjct: 121 QSENEKPEHIKIAIRRRPNKTSLNETNETGIKRSSVRTVEERKEEYDKARARIFSTPASP 180

Query: 181 GPVEVLPHTVIEGLGIPPNRDRVEDCR--VNDVEKYTSVTDAGNGASSRVAILRDREKDL 240
              + LP    +G  +  N D  E CR  + D EK  S+ D  +G SSRVAI RDREKD 
Sbjct: 181 DSDDTLPQAPADGKNLCLNGDENEGCRNSMADPEKNISIRD--SGTSSRVAIFRDREKDR 240

Query: 241 SDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNITPSFTGY--------HVPRNEVSLGY 300
           +DPDYDRSYERYV++LP N   S + APF  Q I   F  Y         + R + SL Y
Sbjct: 241 TDPDYDRSYERYVRNLPTN--QSFSLAPFDAQKIQHPFLQYDTGFPQLGQIQRTQASLSY 300

Query: 301 VSPSPIK----TVGLNQVSRPSANVPWPCAGMPYPHT 321
              +PI      +GLNQ SR +  + WP   M Y H+
Sbjct: 301 RPSNPIMNPFCAMGLNQTSRDAVYLQWPSHSMMYAHS 330

[Close]

BLAST of Cucsa.358540 vs. TrEMBL
Match: I1LA89_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G102000 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 1.4e-85
Identity = 188/337 (55.79%), Postives = 224/337 (66.47%), Query Frame = 1


Query: 1   MDSSSPSSIDALPDGLKDKVSTVDPFLIEALHNPRHRLTILRMELDIQRFLQNQDQQLFE 60
           MDSS   + D    G KDK   VDPFL+EAL NPRHR+TILRMELDIQRFL N DQQ FE
Sbjct: 1   MDSSCVPNGDV--SGFKDKEPMVDPFLVEALQNPRHRVTILRMELDIQRFLNNADQQHFE 60

Query: 61  FQHFPTSYLRLAAHRVAQHYGLQTMVQDNGIDGQG-RILVKKTVEARFPTICLSQIPAKQ 120
           FQHFP+SYLRLAAHRVAQHYG+QTMVQDNG +GQG RI+V+K  E+R+P +CLS+IPAKQ
Sbjct: 61  FQHFPSSYLRLAAHRVAQHYGMQTMVQDNGFNGQGTRIMVRKIAESRYPVVCLSEIPAKQ 120

Query: 121 LADDKPGHVKIAIRPRPNKLS-DEAGNCMAKQSHARTVEQRKEEYDKARARIFSSQGSIG 180
           L DDKP  +KIAIRPR NK S +EAG    K +  R+VE+RKEEYD+ARARIFSS  S  
Sbjct: 121 LEDDKPEQIKIAIRPRQNKNSLNEAGR---KSNPLRSVEERKEEYDRARARIFSSSRSCD 180

Query: 181 PVEVLPHTVIEGLGIPPNRDRVEDCR--VNDVEKYTSVTDAGNGASSRVAILRDREKDLS 240
             + L  T  +       +D  E  +  V D E+ T   D    +S+RVAILRDREKD S
Sbjct: 181 SDDTLSQTFTDEKNSLIIKDENETSKTPVVDSEQCTVGRDI---SSTRVAILRDREKDRS 240

Query: 241 DPDYDRSYERYVKSLPINLTPSLNFAPFTVQNITPSFTGY--------HVPRNEVSLGYV 300
           DPDYDR+Y RY +S+PI+   SLN  PF +Q + P F  Y         + +N+ SLGY 
Sbjct: 241 DPDYDRNYGRYARSIPIS---SLNLMPFNLQQVQPPFVQYDNAFNPFSQISQNQASLGYG 300

Query: 301 SP-----SPIKTVGLNQVSRPSANVPWPCAGMPYPHT 321
            P     +P    G NQVSR  A V WP A M Y H+
Sbjct: 301 PPPSPMMNPFGVTGSNQVSRDGAYVQWPSAAMMYAHS 326

[Close]

BLAST of Cucsa.358540 vs. TrEMBL
Match: A0A0B2QZ90_GLYSO (R3H domain-containing protein 2 OS=Glycine soja GN=glysoja_044621 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 1.4e-85
Identity = 188/337 (55.79%), Postives = 224/337 (66.47%), Query Frame = 1


Query: 1   MDSSSPSSIDALPDGLKDKVSTVDPFLIEALHNPRHRLTILRMELDIQRFLQNQDQQLFE 60
           MDSS   + D    G KDK   VDPFL+EAL NPRHR+TILRMELDIQRFL N DQQ FE
Sbjct: 1   MDSSCVPNGDV--SGFKDKEPMVDPFLVEALQNPRHRVTILRMELDIQRFLNNADQQHFE 60

Query: 61  FQHFPTSYLRLAAHRVAQHYGLQTMVQDNGIDGQG-RILVKKTVEARFPTICLSQIPAKQ 120
           FQHFP+SYLRLAAHRVAQHYG+QTMVQDNG +GQG RI+V+K  E+R+P +CLS+IPAKQ
Sbjct: 61  FQHFPSSYLRLAAHRVAQHYGMQTMVQDNGFNGQGTRIMVRKIAESRYPVVCLSEIPAKQ 120

Query: 121 LADDKPGHVKIAIRPRPNKLS-DEAGNCMAKQSHARTVEQRKEEYDKARARIFSSQGSIG 180
           L DDKP  +KIAIRPR NK S +EAG    K +  R+VE+RKEEYD+ARARIFSS  S  
Sbjct: 121 LEDDKPEQIKIAIRPRQNKNSLNEAGR---KSNPLRSVEERKEEYDRARARIFSSSRSCD 180

Query: 181 PVEVLPHTVIEGLGIPPNRDRVEDCR--VNDVEKYTSVTDAGNGASSRVAILRDREKDLS 240
             + L  T  +       +D  E  +  V D E+ T   D    +S+RVAILRDREKD S
Sbjct: 181 SDDTLSQTFTDEKNSLIIKDENETSKTPVVDSEQCTVGRDI---SSTRVAILRDREKDRS 240

Query: 241 DPDYDRSYERYVKSLPINLTPSLNFAPFTVQNITPSFTGY--------HVPRNEVSLGYV 300
           DPDYDR+Y RY +S+PI+   SLN  PF +Q + P F  Y         + +N+ SLGY 
Sbjct: 241 DPDYDRNYGRYARSIPIS---SLNLMPFNLQQVQPPFVQYDNAFNPFSQISQNQASLGYG 300

Query: 301 SP-----SPIKTVGLNQVSRPSANVPWPCAGMPYPHT 321
            P     +P    G NQVSR  A V WP A M Y H+
Sbjct: 301 PPPSPMMNPFGVTGSNQVSRDGAYVQWPSAAMMYAHS 326

[Close]

BLAST of Cucsa.358540 vs. TrEMBL
Match: A0A0A0LFE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G817720 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 2.3e-85
Identity = 184/341 (53.96%), Postives = 226/341 (66.28%), Query Frame = 1


Query: 7   SSIDALPDGLKDKVSTVDPFLIEALHNPRHRLTILRMELDIQRFLQNQDQQLFEFQHFPT 66
           +S D  P G  DK S VDPFL+EAL NPRHRLTILRMELDIQ+FL N DQQLFEFQHFPT
Sbjct: 4   ASFDPTPQGFNDKESMVDPFLVEALQNPRHRLTILRMELDIQKFLHNPDQQLFEFQHFPT 63

Query: 67  SYLRLAAHRVAQHYGLQTMVQDNGIDGQG-RILVKKTVEARFPTICLSQIPAKQLADDKP 126
           SYLRLAAHRVAQHYGLQTMVQD+GIDG G RI+V+K  E R P++ LS+IPAKQL ++K 
Sbjct: 64  SYLRLAAHRVAQHYGLQTMVQDSGIDGFGNRIVVRKMAENRLPSVRLSEIPAKQLDNEKH 123

Query: 127 GHVKIAIRPRPNKLSDEAGNCMA-KQSHARTVEQRKEEYDKARARIFSSQGSIGPVEVLP 186
             VKI IRPRPNK+S  + N    KQS  R+VE+RKEEYD+ARARIFSS  S    + + 
Sbjct: 124 EQVKIVIRPRPNKMSGISANEGGHKQSSVRSVEERKEEYDRARARIFSSPSSPEIDDTIS 183

Query: 187 HTVIEGLGIPPNRDRVEDCRV--NDVEKYTSVTDAGNGASSRVAILRDREKDLSDPDYDR 246
               EG     NRD  E CR    ++EK+    +  +G +SRVAI +DREKD SDPDYDR
Sbjct: 184 QIPSEGKYACSNRDETEGCRTLGGELEKF----NGRDGMTSRVAIFKDREKDRSDPDYDR 243

Query: 247 SYERYVKSLPINLTPSLNFAPFTVQNITPSFTGY--------HVPRNEVSLGY---VSP- 306
           +Y+RY+++LP N   +L+ APF +  + P F  Y        H+P  + S+ Y    SP 
Sbjct: 244 NYDRYIRNLPTN--QNLSLAPFIMPKVQPPFVQYDSGYSLVGHMPGTQASVNYGPHPSPV 303

Query: 307 -SPIKTVGLNQVSRPSANVPWPCAGMPYPHTAFQVHLRSLQ 331
            SP   +GLNQ SR ++   W  A M Y H+  Q    + Q
Sbjct: 304 VSPFCAMGLNQASRDASYEQWQSAAMMYAHSYNQFRHSAFQ 338

[Close]

BLAST of Cucsa.358540 vs. TAIR10
Match: AT3G56680.1 (AT3G56680.1 Single-stranded nucleic acid binding R3H protein)

HSP 1 Score: 255.8 bits (652), Expect = 3.9e-68
Identity = 154/317 (48.58%), Postives = 198/317 (62.46%), Query Frame = 1


Query: 23  VDPFLIEALHNPRHRLTILRMELDIQRFLQNQDQQLFEFQHFPTSYLRLAAHRVAQHYGL 82
           VDPFL+EALHN RHRLTILRMELD+QR LQN +QQ FEFQHFPTSYLRLAAHRVA HYGL
Sbjct: 24  VDPFLVEALHNSRHRLTILRMELDVQRLLQNPEQQQFEFQHFPTSYLRLAAHRVANHYGL 83

Query: 83  QTMVQDNGIDG-QGRILVKKTVEARFPTICLSQIP-AKQLADDKPGHVKIAIRPRPNKLS 142
            T VQ++G DG + RILV KT E++FP + LS+IP AKQ  + K    K++I+ RP+K S
Sbjct: 84  ATAVQESGADGNENRILVTKTTESKFPAVRLSEIPVAKQSENGKFESRKVSIKTRPSKGS 143

Query: 143 D-EAGNCMAKQSHARTVEQRKEEYDKARARIFSSQGSIGPVEVLPHTVIEGLGIPPNRDR 202
              AG+    +   R+VE+RKEEYDKAR RIFS    +   +    T +       +RD 
Sbjct: 144 GYGAGDLEKNRGPLRSVEERKEEYDKARERIFSGLTGLSCDDSSSETQVYERNASLSRDD 203

Query: 203 VEDCRVNDVEKYTSVTDAGNGASSRVAILRDREKDLSDPDYDRSYERYVKSLPINLTPSL 262
            +  +   VE   +++   +G +SRVAI RDREKD  DPDYDR ++RY++SLP+N   + 
Sbjct: 204 KQVSKNAYVEVKKNLSIRESGPTSRVAIFRDREKDRFDPDYDRRHQRYIRSLPVN--QNF 263

Query: 263 NFAPFTVQNI-TP----SFTGYH-VPRNEVSLGYVSPSPIKTVGLNQVSRPSANVPWPCA 322
           N  PF +Q I TP     FTGY+ +P     LG+  P P   +     +  +  + WP A
Sbjct: 264 NLPPFNIQQIPTPYYEMGFTGYNQIPSPPAPLGF-GPHPSSIMSPYGTTMDAMYMHWPNA 323

Query: 323 GMPYPHTAFQVHLRSLQ 331
            M Y H   Q    SLQ
Sbjct: 324 AMMYAHPYEQFRNGSLQ 337

[Close]

BLAST of Cucsa.358540 vs. TAIR10
Match: AT2G40960.1 (AT2G40960.1 Single-stranded nucleic acid binding R3H protein)

HSP 1 Score: 245.0 bits (624), Expect = 6.9e-65
Identity = 151/315 (47.94%), Postives = 198/315 (62.86%), Query Frame = 1


Query: 16  LKDKVSTVDPFLIEALHNPRHRLTILRMELDIQRFLQNQDQQLFEFQHFPTSYLRLAAHR 75
           + DK   VDPFL+EAL NPRHRLTILRMELD+QRFLQ+ DQQ FEFQHFPTSYLR AAHR
Sbjct: 14  IADKGFNVDPFLVEALQNPRHRLTILRMELDVQRFLQSPDQQQFEFQHFPTSYLRFAAHR 73

Query: 76  VAQHYGLQTMVQDNGIDG-QGRILVKKTVEARFPTICLSQIPAKQLADDKPGHVKIAIRP 135
           VA HYGL T V+D G DG + RI+V K+ ++RFP   LS+IP KQ    K  H+K+ I+P
Sbjct: 74  VANHYGLITSVRDGGADGNESRIVVTKSSDSRFPAARLSEIPVKQSETGKFEHMKVVIKP 133

Query: 136 RPNKLSDEAGNCMAKQSHARTVEQRKEEYDKARARIFSSQGSIGPVEVLPHTVIEGLGIP 195
           RP K S   G+ + K    ++VE+RKE+YD+ARARIF+   +I   +    T    +   
Sbjct: 134 RPTKGSGMEGDEL-KGGLLKSVEERKEDYDRARARIFNGLVNIDCNDSSSETNPWRVNCS 193

Query: 196 PNRDRVEDCRVNDVEKYTSVTDAGNGASSRVAILRDREKDLSDPDYDRSYERYVKSLPIN 255
            +RD  +  +  ++E   +     +  +SR+AILRDREKD  DPDYDRS  RY+ +LP++
Sbjct: 194 SSRDENQVLKNGNIEADKNNISRKSNPASRIAILRDREKDRYDPDYDRSNYRYISNLPVD 253

Query: 256 LTPSLNFAPFTVQNI-TP----SFTGYH-VPRNEVSLGYVS-PSPIKTVGLNQVSRPSA- 315
              +L  A F +Q + TP     F GY       ++LG  S  SP  T GLNQ SR +A 
Sbjct: 254 --QNLCVAHFNIQTMGTPIYDMGFRGYSPTAPPSLNLGQHSVMSPCVTTGLNQPSRDAAM 313

Query: 316 NVPWP-CAGMPYPHT 321
            + WP  A + Y H+
Sbjct: 314 YMQWPNAAAVMYTHS 325

[Close]

BLAST of Cucsa.358540 vs. TAIR10
Match: AT3G10770.1 (AT3G10770.1 Single-stranded nucleic acid binding R3H protein)

HSP 1 Score: 233.4 bits (594), Expect = 2.1e-61
Identity = 150/320 (46.88%), Postives = 192/320 (60.00%), Query Frame = 1


Query: 16  LKDKVSTVDPFLIEALHNPRHRLTILRMELDIQRFLQNQDQQLFEFQHFPTSYLRLAAHR 75
           + +K + VDPFL+EAL NPRHRLTILRMELDIQ+F QN +Q  FEF  FPTSYLRLAAHR
Sbjct: 4   MTEKEAMVDPFLVEALQNPRHRLTILRMELDIQKFFQNPEQLQFEFPPFPTSYLRLAAHR 63

Query: 76  VAQHYGLQTMVQDNGI---DG-QGRILVKKTVEARFPTICLSQIPAKQLADDKPGHVKIA 135
           VAQHYGL TM  DNG    DG   RILV KT E+RFP +CLS+IP KQ  + +P   KIA
Sbjct: 64  VAQHYGLVTMALDNGTGAGDGSDNRILVTKTAESRFPYVCLSEIPVKQPENGRPEGFKIA 123

Query: 136 IRPRPNKLSDEAGN-CMAKQSHARTVEQRKEEYDKARARIFSSQGSIGPVEVLPHTVIEG 195
           I+PRP + S   G+    +Q+  R+VE+RKEEYDKARARIF+S  S            + 
Sbjct: 124 IKPRPKRGSGCGGSGSGVQQNLLRSVEERKEEYDKARARIFNSPSSSDSE--------DS 183

Query: 196 LGIPPNRDRVEDCRVNDVEKYTSVTDA-------GNGASSRVAILRDREKDLSDPDYDRS 255
             + P    V +  +N  E   +V ++        +G +SRVAI+RDREKD  DPDYDRS
Sbjct: 184 SSLRPPSLEVRNTCINRNETEVAVNNSPVDAVTRDSGRTSRVAIIRDREKDRYDPDYDRS 243

Query: 256 YERYVKSLP---INLTPS-LNFAPFTVQNITPSFTGY--HVPR-NEVSLGYVSPSPIKTV 312
           Y+RYV       + + PS  +F+P  +    P   G+  H+PR ++ +L Y  P      
Sbjct: 244 YDRYVVDPAYRYVRVMPSGQSFSPMPIH--IPFHDGFFPHMPRGHQANLNYGHP------ 303

[Close]

BLAST of Cucsa.358540 vs. TAIR10
Match: AT5G05100.1 (AT5G05100.1 Single-stranded nucleic acid binding R3H protein)

HSP 1 Score: 232.6 bits (592), Expect = 3.5e-61
Identity = 151/329 (45.90%), Postives = 191/329 (58.05%), Query Frame = 1


Query: 16  LKDKVSTVDPFLIEALHNPRHRLTILRMELDIQRFLQNQDQQLFEFQHFPTSYLRLAAHR 75
           + DK + VDPFL+EAL NPRHRLTILRMELDIQ+F Q+ +QQ +EFQ  PTSYLRL AHR
Sbjct: 4   MSDKEAMVDPFLVEALQNPRHRLTILRMELDIQKFFQSPEQQQYEFQPLPTSYLRLIAHR 63

Query: 76  VAQHYGL-QTMVQDNGIDGQG-RILVKKTVEARFPTICLSQIPAKQ-LADDKPGHVKIAI 135
           VAQHYGL  T ++  G+DG G RIL  KTVE+R+P +CLS+IP KQ     +P   KIAI
Sbjct: 64  VAQHYGLFTTALEGGGVDGSGNRILATKTVESRYPYVCLSEIPVKQPEIHGRPEGFKIAI 123

Query: 136 RPRPNKLSDEAGNCMAKQSH-ARTVEQRKEEYDKARARIFSSQGSI--------GPVEVL 195
           +PRPN+ +  +G+    + +  R+VE+RKEEYDKARARIF+S  S          P    
Sbjct: 124 KPRPNRGAGGSGSGSGVEKNLLRSVEERKEEYDKARARIFNSPSSSDSEDSSTRAPPPPY 183

Query: 196 PHTVIEGLGIPPNRDRVE-----DCRVNDVEKYTSVTDAGNGASSRVAILRDREKDLSDP 255
           P    +     P+R+  E     +    DVE+   + D+G   +SRVAI+RDREKD  DP
Sbjct: 184 PRLDSKHNTACPSRNETEVVVNYNSNPVDVERNGVIRDSGR--TSRVAIIRDREKDRYDP 243

Query: 256 DYDRSYERYVKSLPINLTPSLNFAPFTVQNITPSFTGYHVPRNEVSLGYVSPSPIKTVGL 315
           DYDR+  RYV+  P    P  NF P  +           +PR + SL Y  P       L
Sbjct: 244 DYDRN--RYVRVAP----PVQNFNPIPIPLPFHDAIFPQMPRTQASLNYGHP-------L 303

Query: 316 NQVSRPSANVPWPCAGMPYPHT--AFQVH 326
           N      +   WP A M Y  T  A  VH
Sbjct: 304 NPAMTAPSYTEWPSATMTYAQTLNASDVH 317

[Close]

BLAST of Cucsa.358540 vs. NCBI nr
Match: gi|449453149|ref|XP_004144321.1| (PREDICTED: cAMP-regulated phosphoprotein 21 [Cucumis sativus])

HSP 1 Score: 656.8 bits (1693), Expect = 2.2e-185
Identity = 324/326 (99.39%), Postives = 324/326 (99.39%), Query Frame = 1


Query: 1   MDSSSPSSIDALPDGLKDKVSTVDPFLIEALHNPRHRLTILRMELDIQRFLQNQDQQLFE 60
           MDSSSPSSIDALPDGLKDKVSTVDPFLIEALHNPRHRLTILRMELDIQRFLQNQDQQLFE
Sbjct: 1   MDSSSPSSIDALPDGLKDKVSTVDPFLIEALHNPRHRLTILRMELDIQRFLQNQDQQLFE 60

Query: 61  FQHFPTSYLRLAAHRVAQHYGLQTMVQDNGIDGQGRILVKKTVEARFPTICLSQIPAKQL 120
           FQHFPTSYLRLAAHRVAQHYGLQTMVQDNGIDGQGRILVKKTVEARFPTICLSQIPAKQL
Sbjct: 61  FQHFPTSYLRLAAHRVAQHYGLQTMVQDNGIDGQGRILVKKTVEARFPTICLSQIPAKQL 120

Query: 121 ADDKPGHVKIAIRPRPNKLSDEAGNCMAKQSHARTVEQRKEEYDKARARIFSSQGSIGPV 180
           ADDKPGHVKIAIRPRPNKLSDEAGNCMAKQSHARTVEQRKEEYDKARARIFSSQGSIGPV
Sbjct: 121 ADDKPGHVKIAIRPRPNKLSDEAGNCMAKQSHARTVEQRKEEYDKARARIFSSQGSIGPV 180

Query: 181 EVLPHTVIEGLGIPPNRDRVEDCRVNDVEKYTSVTDAGNGASSRVAILRDREKDLSDPDY 240
           EVLPHTVIEGLGIPPNRDRVEDCRVNDVEKYTSVTDAGNGASSRVAILRDREKDLSDPDY
Sbjct: 181 EVLPHTVIEGLGIPPNRDRVEDCRVNDVEKYTSVTDAGNGASSRVAILRDREKDLSDPDY 240

Query: 241 DRSYERYVKSLPINLTPSLNFAPFTVQNITPSFTGYHVPRNEVSLGYVSPSPIKTVGLNQ 300
           DRSYERYVKSLPINLTPSLNFAPFTVQNITPSFTGYHVPRNEVSLGYVSPSPIKTVGLNQ
Sbjct: 241 DRSYERYVKSLPINLTPSLNFAPFTVQNITPSFTGYHVPRNEVSLGYVSPSPIKTVGLNQ 300

Query: 301 VSRPSANVPWPCAGMPYPHTAFQVHL 327
           VSRPSANVPWPCAGMPYPHTAFQ  L
Sbjct: 301 VSRPSANVPWPCAGMPYPHTAFQAPL 326

[Close]

BLAST of Cucsa.358540 vs. NCBI nr
Match: gi|659111452|ref|XP_008455743.1| (PREDICTED: R3H domain-containing protein 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 598.6 bits (1542), Expect = 7.0e-168
Identity = 296/326 (90.80%), Postives = 304/326 (93.25%), Query Frame = 1


Query: 1   MDSSSPSSIDALPDGLKDKVSTVDPFLIEALHNPRHRLTILRMELDIQRFLQNQDQQLFE 60
           MDSSS S IDA PDGLKDKVS VDPFLIE LHNPRHRLTILRMELDIQRFLQNQ+QQ+FE
Sbjct: 1   MDSSSASPIDAFPDGLKDKVSVVDPFLIEVLHNPRHRLTILRMELDIQRFLQNQEQQVFE 60

Query: 61  FQHFPTSYLRLAAHRVAQHYGLQTMVQDNGIDGQGRILVKKTVEARFPTICLSQIPAKQL 120
           FQHFPTSYLRLAAHRVAQHYGLQTMVQDNGIDGQGRILVKKTVEARFPTICLSQIPAKQL
Sbjct: 61  FQHFPTSYLRLAAHRVAQHYGLQTMVQDNGIDGQGRILVKKTVEARFPTICLSQIPAKQL 120

Query: 121 ADDKPGHVKIAIRPRPNKLSDEAGNCMAKQSHARTVEQRKEEYDKARARIFSSQGSIGPV 180
           ADDKPGHVKIA+RP+PNKLSD+AGNCMAKQSH RTVEQRKEEYDKARARIFSSQ S G V
Sbjct: 121 ADDKPGHVKIAVRPKPNKLSDDAGNCMAKQSHGRTVEQRKEEYDKARARIFSSQSS-GSV 180

Query: 181 EVLPHTVIEGLGIPPNRDRVEDCRVNDVEKYTSVTDAGNGASSRVAILRDREKDLSDPDY 240
           +VL HTV EGLGIPPNRDR EDCRVNDVEKY S TDAGNGASSRVAILRDREKDLSDPDY
Sbjct: 181 DVLSHTVTEGLGIPPNRDRAEDCRVNDVEKYMSGTDAGNGASSRVAILRDREKDLSDPDY 240

Query: 241 DRSYERYVKSLPINLTPSLNFAPFTVQNITPSFTGYHVPRNEVSLGYVSPSPIKTVGLNQ 300
           DRSYERYVKSLPINLTPSLNF PFT QNI PSFTGYHVPRNEV LGYVSPS IKTVGLNQ
Sbjct: 241 DRSYERYVKSLPINLTPSLNFPPFTFQNIMPSFTGYHVPRNEVPLGYVSPSQIKTVGLNQ 300

Query: 301 VSRPSANVPWPCAGMPYPHTAFQVHL 327
           +SR SANVPWPCAGMPYPH+AFQ  L
Sbjct: 301 MSRSSANVPWPCAGMPYPHSAFQAPL 325

[Close]

BLAST of Cucsa.358540 vs. NCBI nr
Match: gi|659111454|ref|XP_008455744.1| (PREDICTED: R3H domain-containing protein 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 526.6 bits (1355), Expect = 3.4e-146
Identity = 259/284 (91.20%), Postives = 267/284 (94.01%), Query Frame = 1


Query: 43  MELDIQRFLQNQDQQLFEFQHFPTSYLRLAAHRVAQHYGLQTMVQDNGIDGQGRILVKKT 102
           MELDIQRFLQNQ+QQ+FEFQHFPTSYLRLAAHRVAQHYGLQTMVQDNGIDGQGRILVKKT
Sbjct: 1   MELDIQRFLQNQEQQVFEFQHFPTSYLRLAAHRVAQHYGLQTMVQDNGIDGQGRILVKKT 60

Query: 103 VEARFPTICLSQIPAKQLADDKPGHVKIAIRPRPNKLSDEAGNCMAKQSHARTVEQRKEE 162
           VEARFPTICLSQIPAKQLADDKPGHVKIA+RP+PNKLSD+AGNCMAKQSH RTVEQRKEE
Sbjct: 61  VEARFPTICLSQIPAKQLADDKPGHVKIAVRPKPNKLSDDAGNCMAKQSHGRTVEQRKEE 120

Query: 163 YDKARARIFSSQGSIGPVEVLPHTVIEGLGIPPNRDRVEDCRVNDVEKYTSVTDAGNGAS 222
           YDKARARIFSSQ S G V+VL HTV EGLGIPPNRDR EDCRVNDVEKY S TDAGNGAS
Sbjct: 121 YDKARARIFSSQSS-GSVDVLSHTVTEGLGIPPNRDRAEDCRVNDVEKYMSGTDAGNGAS 180

Query: 223 SRVAILRDREKDLSDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNITPSFTGYHVPRNE 282
           SRVAILRDREKDLSDPDYDRSYERYVKSLPINLTPSLNF PFT QNI PSFTGYHVPRNE
Sbjct: 181 SRVAILRDREKDLSDPDYDRSYERYVKSLPINLTPSLNFPPFTFQNIMPSFTGYHVPRNE 240

Query: 283 VSLGYVSPSPIKTVGLNQVSRPSANVPWPCAGMPYPHTAFQVHL 327
           V LGYVSPS IKTVGLNQ+SR SANVPWPCAGMPYPH+AFQ  L
Sbjct: 241 VPLGYVSPSQIKTVGLNQMSRSSANVPWPCAGMPYPHSAFQAPL 283

[Close]

BLAST of Cucsa.358540 vs. NCBI nr
Match: gi|1009159750|ref|XP_015897982.1| (PREDICTED: uncharacterized protein LOC107431548 [Ziziphus jujuba])

HSP 1 Score: 335.9 bits (860), Expect = 8.4e-89
Identity = 193/336 (57.44%), Postives = 232/336 (69.05%), Query Frame = 1


Query: 1   MDSSSPSSIDALPDGLKDKVSTVDPFLIEALHNPRHRLTILRMELDIQRFLQNQDQQLFE 60
           MDSS+P  ++  P  + DK S VDPFL+EALHNPRHRLT+LRMELDIQRFL N DQQ FE
Sbjct: 1   MDSSAP--VEVRPH-IPDKESMVDPFLVEALHNPRHRLTLLRMELDIQRFLHNPDQQQFE 60

Query: 61  FQHFPTSYLRLAAHRVAQHYGLQTMVQDNGIDGQG-RILVKKTVEARFPTICLSQIPAKQ 120
           FQHFPTSYLRLAAHRVAQHYGLQTMVQD G+DGQG RILV+KT E+++P + LS+IP KQ
Sbjct: 61  FQHFPTSYLRLAAHRVAQHYGLQTMVQDTGLDGQGNRILVRKTAESKYPAVRLSEIPMKQ 120

Query: 121 LADDKPGHVKIAIRPRPNKLSDEAGNCMAKQSHARTVEQRKEEYDKARARIFSSQGSIGP 180
           L +DKP  VKIAIR RPN+   EA     K++  R+VE+RKE+YDKARARIFSS      
Sbjct: 121 LENDKPEMVKIAIRRRPNRSLSEANEAGTKRNPVRSVEERKEDYDKARARIFSSPSISDS 180

Query: 181 VEVLPHTVIEG--LGIPPNRDRVEDCR--VNDVEKYTSVTDAGNGASSRVAILRDREKDL 240
            + L    ++G  LG+  N +  E CR  V D EK TS+ D    +SSRVAI RDREKD 
Sbjct: 181 DDKLSQVPMDGRTLGLISNDN--EGCRNSVVDGEKNTSIRDV--TSSSRVAIFRDREKDR 240

Query: 241 SDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNITPSFTGY------HVPRNEVSLGYVS 300
           +DPDYDRSYERYV++LP N   +LN APF VQ I P F  Y       +PR + SL Y  
Sbjct: 241 TDPDYDRSYERYVRNLPGN--QNLNLAPFNVQKIQPPFVQYDAVFSGQMPRTQASLSYGP 300

Query: 301 PS-----PIKTVGLNQVSRPSANVPWPCAGMPYPHT 321
           PS     P   +GLNQ +R ++ + W  A M Y H+
Sbjct: 301 PSTPAINPFCAMGLNQTTRDASYMQWSTAAMVYAHS 327

[Close]

BLAST of Cucsa.358540 vs. NCBI nr
Match: gi|225440145|ref|XP_002283240.1| (PREDICTED: R3H domain-containing protein 2 [Vitis vinifera])

HSP 1 Score: 328.9 bits (842), Expect = 1.0e-86
Identity = 190/337 (56.38%), Postives = 222/337 (65.88%), Query Frame = 1


Query: 1   MDSSS-PSSIDALPDGLKDKVSTVDPFLIEALHNPRHRLTILRMELDIQRFLQNQDQQLF 60
           MDS+   + + A P    DK S VDPFL+EAL NPRHRLTILRMELDIQRFLQN DQQ F
Sbjct: 1   MDSAPYANDVSATPG---DKESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQQF 60

Query: 61  EFQHFPTSYLRLAAHRVAQHYGLQTMVQDNGIDG-QGRILVKKTVEARFPTICLSQIPAK 120
           EFQHFPTSYLRLAAHRVA HYGLQTMVQDN +DG   RI+V KT E+R P ICLS+IPAK
Sbjct: 61  EFQHFPTSYLRLAAHRVALHYGLQTMVQDNSVDGLANRIVVMKTAESRCPAICLSEIPAK 120

Query: 121 QLADDKPGHVKIAIRPRPNKLS-DEAGNCMAKQSHARTVEQRKEEYDKARARIFSSQGSI 180
           Q  ++KP H+KIAIR RPNK S +E      K+S  RTVE+RKEEYDKARARIFS+  S 
Sbjct: 121 QSENEKPEHIKIAIRRRPNKTSLNETNETGIKRSSVRTVEERKEEYDKARARIFSTPASP 180

Query: 181 GPVEVLPHTVIEGLGIPPNRDRVEDCR--VNDVEKYTSVTDAGNGASSRVAILRDREKDL 240
              + LP    +G  +  N D  E CR  + D EK  S+ D  +G SSRVAI RDREKD 
Sbjct: 181 DSDDTLPQAPADGKNLCLNGDENEGCRNSMADPEKNISIRD--SGTSSRVAIFRDREKDR 240

Query: 241 SDPDYDRSYERYVKSLPINLTPSLNFAPFTVQNITPSFTGY--------HVPRNEVSLGY 300
           +DPDYDRSYERYV++LP N   S + APF  Q I   F  Y         + R + SL Y
Sbjct: 241 TDPDYDRSYERYVRNLPTN--QSFSLAPFDAQKIQHPFLQYDTGFPQLGQIQRTQASLSY 300

Query: 301 VSPSPIK----TVGLNQVSRPSANVPWPCAGMPYPHT 321
              +PI      +GLNQ SR +  + WP   M Y H+
Sbjct: 301 RPSNPIMNPFCAMGLNQTSRDAVYLQWPSHSMMYAHS 330

The following BLAST results are available for this feature:

BLAST of Cucsa.358540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
R3HD1_HUMAN	7.0e-11	34.42	R3H domain-containing protein 1 OS=Homo sapiens GN=R3HDM1 PE=1 SV=3	[more]
R3HD2_MOUSE	5.0e-09	30.38	R3H domain-containing protein 2 OS=Mus musculus GN=R3hdm2 PE=1 SV=2	[more]
R3HD2_BOVIN	1.1e-08	29.75	R3H domain-containing protein 2 OS=Bos taurus GN=R3HDM2 PE=2 SV=1	[more]

BLAST of Cucsa.358540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L247_CUCSA	1.5e-185	99.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G420720 PE=4 SV=1	[more]
A5AMT9_VITVI	7.2e-87	56.38	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g00890 PE=4 SV=...	[more]
I1LA89_SOYBN	1.4e-85	55.79	Uncharacterized protein OS=Glycine max GN=GLYMA_10G102000 PE=4 SV=1	[more]
A0A0B2QZ90_GLYSO	1.4e-85	55.79	R3H domain-containing protein 2 OS=Glycine soja GN=glysoja_044621 PE=4 SV=1	[more]
A0A0A0LFE9_CUCSA	2.3e-85	53.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G817720 PE=4 SV=1	[more]

BLAST of Cucsa.358540 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G56680.1	3.9e-68	48.58	Single-stranded nucleic acid binding R3H protein	[more]
AT2G40960.1	6.9e-65	47.94	Single-stranded nucleic acid binding R3H protein	[more]
AT3G10770.1	2.1e-61	46.88	Single-stranded nucleic acid binding R3H protein	[more]
AT5G05100.1	3.5e-61	45.90	Single-stranded nucleic acid binding R3H protein	[more]

BLAST of Cucsa.358540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453149\|ref\|XP_004144321.1\|	2.2e-185	99.39	PREDICTED: cAMP-regulated phosphoprotein 21 [Cucumis sativus]	[more]
gi\|659111452\|ref\|XP_008455743.1\|	7.0e-168	90.80	PREDICTED: R3H domain-containing protein 1-like isoform X1 [Cucumis melo]	[more]
gi\|659111454\|ref\|XP_008455744.1\|	3.4e-146	91.20	PREDICTED: R3H domain-containing protein 1-like isoform X2 [Cucumis melo]	[more]
gi\|1009159750\|ref\|XP_015897982.1\|	8.4e-89	57.44	PREDICTED: uncharacterized protein LOC107431548 [Ziziphus jujuba]	[more]
gi\|225440145\|ref\|XP_002283240.1\|	1.0e-86	56.38	PREDICTED: R3H domain-containing protein 2 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001374	R3H_dom
IPR024771	SUZ
IPR001374	R3H_dom
IPR024771	SUZ
IPR001374	R3H_dom
IPR024771	SUZ

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0003676	nucleic acid binding
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.358540.3	Cucsa.358540.3	mRNA
Cucsa.358540.2	Cucsa.358540.2	mRNA
Cucsa.358540.1	Cucsa.358540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001374	R3H domain	GENE3D	G3DSA:3.30.1370.50		coord: 39..109 score: 9.2
IPR001374	R3H domain	PFAM	PF01424	R3H	coord: 39..90 score: 2.9
IPR001374	R3H domain	SMART	SM00393	R3H_4	coord: 21..102 score: 2.5
IPR001374	R3H domain	PROFILE	PS51061	R3H	coord: 37..101 score: 10
IPR001374	R3H domain	unknown	SSF82708	R3H domain	coord: 12..123 score: 3.53
IPR024771	SUZ domain	PFAM	PF12752	SUZ	coord: 129..173 score: 2.
IPR024771	SUZ domain	PROFILE	PS51673	SUZ	coord: 106..175 score: 11
None	No IPR available	unknown	Coil	Coil	coord: 336..339 scor
None	No IPR available	PANTHER	PTHR15672	CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN	coord: 14..337 score: 2.3E
None	No IPR available	PANTHER	PTHR15672:SF15	EXPRESSED PROTEIN	coord: 14..337 score: 2.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.358540	Cla012088	Watermelon (97103) v1	cgywmB645
Cucsa.358540	Csa4G420720	Cucumber (Chinese Long) v2	cgycuB502
Cucsa.358540	MELO3C019120	Melon (DHL92) v3.5.1	cgymeB578
Cucsa.358540	ClCG04G005800	Watermelon (Charleston Gray)	cgywcgB609
Cucsa.358540	CSPI04G18940	Wild cucumber (PI 183967)	cgycpiB530
Cucsa.358540	Lsi01G017660	Bottle gourd (USVL1VR-Ls)	cgylsiB576
Cucsa.358540	MELO3C019120.2	Melon (DHL92) v3.6.1	cgymedB579
Cucsa.358540	CsaV3_4G029320	Cucumber (Chinese Long) v3	cgycucB544
Cucsa.358540	Cla97C04G072380	Watermelon (97103) v2	cgywmbB613
Cucsa.358540	Bhi03G002065	Wax gourd	cgywgoB715

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.358540	Silver-seed gourd	carcgyB0659
Cucsa.358540	Cucurbita maxima (Rimu)	cgycmaB0973
Cucsa.358540	Cucurbita maxima (Rimu)	cgycmaB0974
Cucsa.358540	Cucurbita moschata (Rifu)	cgycmoB0977
Cucsa.358540	Cucurbita pepo (Zucchini)	cgycpeB0934