Cucsa.356570 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.356570
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionZinc finger C-x8-C-x5-C-x3-H type family protein
Locationscaffold03577 : 1377000 .. 1377217 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGAAAGAGAGAGAAATTTACTTAATTCTAAGTTAGCCGAGTTTGAGGGCCTTCTTCTTAAGCCATATGTAACACCATCAAATCGTGCTCCTGGCAACCAAAGCTCATTTTCAGGAACTAATTCTCCTTCAATTCTACCAAGTGCTCAAAATAACACTCCTTCGTTGTCAAGTTTTAGCCAGTTGGGTGCATCACTTAATACAGGATTTGGTGCTAG

mRNA sequence

GTTGAAAGAGAGAGAAATTTACTTAATTCTAAGTTAGCCGAGTTTGAGGGCCTTCTTCTTAAGCCATATGTAACACCATCAAATCGTGCTCCTGGCAACCAAAGCTCATTTTCAGGAACTAATTCTCCTTCAATTCTACCAAGTGCTCAAAATAACACTCCTTCGTTGTCAAGTTTTAGCCAGTTGGGTGCATCACTTAATACAGGATTTGGTGCTAG

Coding sequence (CDS)

GTTGAAAGAGAGAGAAATTTACTTAATTCTAAGTTAGCCGAGTTTGAGGGCCTTCTTCTTAAGCCATATGTAACACCATCAAATCGTGCTCCTGGCAACCAAAGCTCATTTTCAGGAACTAATTCTCCTTCAATTCTACCAAGTGCTCAAAATAACACTCCTTCGTTGTCAAGTTTTAGCCAGTTGGGTGCATCACTTAATACAGGATTTGGTGCTAG

Protein sequence

VERERNLLNSKLAEFEGLLLKPYVTPSNRAPGNQSSFSGTNSPSILPSAQNNTPSLSSFSQLGASLNTGFGAX
Homology
[Close]
BLAST of Cucsa.356570 vs. Swiss-Prot
Match: C3H16_ARATH (Zinc finger CCCH domain-containing protein 16 OS=Arabidopsis thaliana GN=CG1 PE=1 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 2.2e-07
Identity = 38/74 (51.35%), Postives = 44/74 (59.46%), Query Frame = 1 

Query: 1   VERERNLLNSKLAEFEGLLLKPYVTPSNRAPGNQSSFSGTNSPSILP-SAQNNTPS--LS 60
           VERERNL NSK+AEFE  L  PY         NQS F+ T +PSI P S+Q N+PS   S
Sbjct: 168 VERERNLQNSKIAEFENFLRNPY---KGSVTANQSPFAAT-TPSIFPQSSQINSPSPAFS 227

Query: 61  SFSQLGASLNTGFG 72
            F+Q  A  NT  G
Sbjct: 228 GFNQQTAFSNTNAG 237

[Close]
BLAST of Cucsa.356570 vs. TrEMBL
Match: A0A067K7I7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19788 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-11
Identity = 44/72 (61.11%), Postives = 49/72 (68.06%), Query Frame = 1 

Query: 1   VERERNLLNSKLAEFEGLLLKPYVTPSNRAPGNQSSFSGTNSPSILPSAQNNTPSL-SSF 60
           VERERNLLNSKL EFE L+  PYV P+  A  +QS F+G   P+I  S QNN P L SSF
Sbjct: 177 VERERNLLNSKLIEFENLIRNPYVAPAKSAL-SQSPFAGVTPPAIATSDQNNAPPLVSSF 236

Query: 61  SQLGASLNTGFG 72
           SQLG SLN   G
Sbjct: 237 SQLGPSLNVESG 247

[Close]
BLAST of Cucsa.356570 vs. TrEMBL
Match: B9RL60_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1667360 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-11
Identity = 44/68 (64.71%), Postives = 48/68 (70.59%), Query Frame = 1 

Query: 1   VERERNLLNSKLAEFEGLLLKPYVTPSNRAPGNQSSFSGTNSPSILPSAQNN-TPSLSSF 60
           VERERNLL+SKL EFE LL  PY  P   A  +QS F G    +ILPS QNN  PS+SSF
Sbjct: 164 VERERNLLSSKLIEFENLLRNPYAAPPKSA-FSQSPFPGVTPNAILPSGQNNPPPSVSSF 223

Query: 61  SQLGASLN 68
           SQLGASLN
Sbjct: 224 SQLGASLN 230

[Close]
BLAST of Cucsa.356570 vs. TrEMBL
Match: A0A0D2TGB1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G009900 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.0e-11
Identity = 41/77 (53.25%), Postives = 47/77 (61.04%), Query Frame = 1 

Query: 1   VERERNLLNSKLAEFEGLLLKPYVTPSNRAPGNQSSFSGTNSPSILPSAQNNT------- 60
           +ERERNLLNSKL EFE  L  PY  P+  A   Q  F G  +  + P+ QN         
Sbjct: 170 IERERNLLNSKLVEFENFLRNPYRGPAGSAAAQQIPFPGATTIVLSPTTQNTVAPQSNVP 229

Query: 61  PSLSSFSQLGASLNTGF 71
           PS+SSFSQLGASLNTGF
Sbjct: 230 PSVSSFSQLGASLNTGF 246

[Close]
BLAST of Cucsa.356570 vs. TrEMBL
Match: A0A0D2V082_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G009900 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.0e-11
Identity = 41/77 (53.25%), Postives = 47/77 (61.04%), Query Frame = 1 

Query: 1   VERERNLLNSKLAEFEGLLLKPYVTPSNRAPGNQSSFSGTNSPSILPSAQNNT------- 60
           +ERERNLLNSKL EFE  L  PY  P+  A   Q  F G  +  + P+ QN         
Sbjct: 170 IERERNLLNSKLVEFENFLRNPYRGPAGSAAAQQIPFPGATTIVLSPTTQNTVAPQSNVP 229

Query: 61  PSLSSFSQLGASLNTGF 71
           PS+SSFSQLGASLNTGF
Sbjct: 230 PSVSSFSQLGASLNTGF 246

[Close]
BLAST of Cucsa.356570 vs. TrEMBL
Match: A0A0D2RVL9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G009900 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.0e-11
Identity = 41/77 (53.25%), Postives = 47/77 (61.04%), Query Frame = 1 

Query: 1   VERERNLLNSKLAEFEGLLLKPYVTPSNRAPGNQSSFSGTNSPSILPSAQNNT------- 60
           +ERERNLLNSKL EFE  L  PY  P+  A   Q  F G  +  + P+ QN         
Sbjct: 170 IERERNLLNSKLVEFENFLRNPYRGPAGSAAAQQIPFPGATTIVLSPTTQNTVAPQSNVP 229

Query: 61  PSLSSFSQLGASLNTGF 71
           PS+SSFSQLGASLNTGF
Sbjct: 230 PSVSSFSQLGASLNTGF 246

[Close]
BLAST of Cucsa.356570 vs. TAIR10
Match: AT1G75340.1 (AT1G75340.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-08
Identity = 38/74 (51.35%), Postives = 44/74 (59.46%), Query Frame = 1 

Query: 1   VERERNLLNSKLAEFEGLLLKPYVTPSNRAPGNQSSFSGTNSPSILP-SAQNNTPS--LS 60
           VERERNL NSK+AEFE  L  PY         NQS F+ T +PSI P S+Q N+PS   S
Sbjct: 168 VERERNLQNSKIAEFENFLRNPY---KGSVTANQSPFAAT-TPSIFPQSSQINSPSPAFS 227

Query: 61  SFSQLGASLNTGFG 72
            F+Q  A  NT  G
Sbjct: 228 GFNQQTAFSNTNAG 237

[Close]
BLAST of Cucsa.356570 vs. NCBI nr
Match: gi|778664070|ref|XP_011660211.1| (PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-31
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1   VERERNLLNSKLAEFEGLLLKPYVTPSNRAPGNQSSFSGTNSPSILPSAQNNTPSLSSFS 60
           VERERNLLNSKLAEFEGLLLKPYVTPSNRAPGNQSSFSGTNSPSILPSAQNNTPSLSSFS
Sbjct: 158 VERERNLLNSKLAEFEGLLLKPYVTPSNRAPGNQSSFSGTNSPSILPSAQNNTPSLSSFS 217

Query: 61  QLGASLNTGFGA 73
           QLGASLNTGFGA
Sbjct: 218 QLGASLNTGFGA 229

[Close]
BLAST of Cucsa.356570 vs. NCBI nr
Match: gi|778664073|ref|XP_011660212.1| (PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X2 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-31
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1   VERERNLLNSKLAEFEGLLLKPYVTPSNRAPGNQSSFSGTNSPSILPSAQNNTPSLSSFS 60
           VERERNLLNSKLAEFEGLLLKPYVTPSNRAPGNQSSFSGTNSPSILPSAQNNTPSLSSFS
Sbjct: 158 VERERNLLNSKLAEFEGLLLKPYVTPSNRAPGNQSSFSGTNSPSILPSAQNNTPSLSSFS 217

Query: 61  QLGASLNTGFGA 73
           QLGASLNTGFGA
Sbjct: 218 QLGASLNTGFGA 229

[Close]
BLAST of Cucsa.356570 vs. NCBI nr
Match: gi|659085904|ref|XP_008443668.1| (PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X2 [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 8.4e-31
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 1 

Query: 1   VERERNLLNSKLAEFEGLLLKPYVTPSNRAPGNQSSFSGTNSPSILPSAQNNTPSLSSFS 60
           VERERNLLNSKLAEFEGLL KPYVTPSNRAPGNQSSFSGTNSPSILPSAQNNTPSLSSFS
Sbjct: 158 VERERNLLNSKLAEFEGLLHKPYVTPSNRAPGNQSSFSGTNSPSILPSAQNNTPSLSSFS 217

Query: 61  QLGASLNTGFGA 73
           QLGASLNTGFGA
Sbjct: 218 QLGASLNTGFGA 229

[Close]
BLAST of Cucsa.356570 vs. NCBI nr
Match: gi|659085902|ref|XP_008443667.1| (PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 8.4e-31
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 1 

Query: 1   VERERNLLNSKLAEFEGLLLKPYVTPSNRAPGNQSSFSGTNSPSILPSAQNNTPSLSSFS 60
           VERERNLLNSKLAEFEGLL KPYVTPSNRAPGNQSSFSGTNSPSILPSAQNNTPSLSSFS
Sbjct: 158 VERERNLLNSKLAEFEGLLHKPYVTPSNRAPGNQSSFSGTNSPSILPSAQNNTPSLSSFS 217

Query: 61  QLGASLNTGFGA 73
           QLGASLNTGFGA
Sbjct: 218 QLGASLNTGFGA 229

[Close]
BLAST of Cucsa.356570 vs. NCBI nr
Match: gi|802707364|ref|XP_012084301.1| (PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Jatropha curcas])

HSP 1 Score: 76.3 bits (186), Expect = 2.5e-11
Identity = 44/72 (61.11%), Postives = 49/72 (68.06%), Query Frame = 1 

Query: 1   VERERNLLNSKLAEFEGLLLKPYVTPSNRAPGNQSSFSGTNSPSILPSAQNNTPSL-SSF 60
           VERERNLLNSKL EFE L+  PYV P+  A  +QS F+G   P+I  S QNN P L SSF
Sbjct: 180 VERERNLLNSKLIEFENLIRNPYVAPAKSAL-SQSPFAGVTPPAIATSDQNNAPPLVSSF 239

Query: 61  SQLGASLNTGFG 72
           SQLG SLN   G
Sbjct: 240 SQLGPSLNVESG 250

The following BLAST results are available for this feature:
BLAST of Cucsa.356570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
C3H16_ARATH2.2e-0751.35Zinc finger CCCH domain-containing protein 16 OS=Arabidopsis thaliana GN=CG1 PE=... [more]
BLAST of Cucsa.356570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A067K7I7_JATCU1.8e-1161.11Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19788 PE=4 SV=1[more]
B9RL60_RICCO2.3e-1164.71Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1667360 PE=4 ... [more]
A0A0D2TGB1_GOSRA4.0e-1153.25Uncharacterized protein OS=Gossypium raimondii GN=B456_012G009900 PE=4 SV=1[more]
A0A0D2V082_GOSRA4.0e-1153.25Uncharacterized protein OS=Gossypium raimondii GN=B456_012G009900 PE=4 SV=1[more]
A0A0D2RVL9_GOSRA4.0e-1153.25Uncharacterized protein OS=Gossypium raimondii GN=B456_012G009900 PE=4 SV=1[more]
BLAST of Cucsa.356570 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G75340.11.3e-0851.35 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
BLAST of Cucsa.356570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778664070|ref|XP_011660211.1|1.3e-31100.00PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Cucumis sat... [more]
gi|778664073|ref|XP_011660212.1|1.3e-31100.00PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X2 [Cucumis sat... [more]
gi|659085904|ref|XP_008443668.1|8.4e-3198.61PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X2 [Cucumis mel... [more]
gi|659085902|ref|XP_008443667.1|8.4e-3198.61PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Cucumis mel... [more]
gi|802707364|ref|XP_012084301.1|2.5e-1161.11PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Jatropha cu... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.356570.1Cucsa.356570.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.356570Cla009531Watermelon (97103) v1cgywmB638
Cucsa.356570Cla97C03G061130Watermelon (97103) v2cgywmbB608
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.356570Cucurbita pepo (Zucchini)cgycpeB0927
Cucsa.356570Cucurbita pepo (Zucchini)cgycpeB0928
Cucsa.356570Bottle gourd (USVL1VR-Ls)cgylsiB573
Cucsa.356570Melon (DHL92) v3.6.1cgymedB575
Cucsa.356570Silver-seed gourdcarcgyB0613
Cucsa.356570Silver-seed gourdcarcgyB1085
Cucsa.356570Cucumber (Chinese Long) v3cgycucB542
Cucsa.356570Wax gourdcgywgoB711
Cucsa.356570Cucurbita maxima (Rimu)cgycmaB0969
Cucsa.356570Cucurbita maxima (Rimu)cgycmaB0970
Cucsa.356570Cucurbita moschata (Rifu)cgycmoB0972
Cucsa.356570Cucurbita moschata (Rifu)cgycmoB0973
Cucsa.356570Wild cucumber (PI 183967)cgycpiB528
Cucsa.356570Cucumber (Chinese Long) v2cgycuB500
Cucsa.356570Melon (DHL92) v3.5.1cgymeB574
Cucsa.356570Watermelon (Charleston Gray)cgywcgB605