Cucsa.356450 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.356450
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Vacuolar protein sorting-associated protein, putative
Location	scaffold03577 : 1257204 .. 1258121 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTATACATGTCCTATTGTAATTGTACATCTCAGTCTAGCTTTTATGTTCCCTATATATGTAACTTTACTCTGAATTAGAATAGGATAATTTTACTCCAAAATAGGGAGTACACTAAAAACATTGTTTTCTTTTGATATTTGGAGATGATAAGGGTGCTATGGAGGTGTCCTAGTTGAGATGTCGGATGCACCTCTTGATTCTTAGGATCAATTGCTCTTTGTTTTCCTATTGTATATTGAGATTTTGTCTCATTTCGTTATCTGAGGCTGAAAAAAAAATCAAATGATTGGCTAATTCTTTTGCCAATTTCGGATTTACTTTGATCGACAGGTTCTTGGTTCTGCTGGTGTCATTGGTAATCCCATGGGATTTGCTAGGAGATTGGGGATTGGAATAAGAGATTTCTTGTCGGTGCCTGCTAAGACCATTTTGCAGGTTTTTTTTCTTTTCCTTTTCCTTTTCCTTTCTCCTTTTACTTTTTCTTTATTTTCCTTTCTTGTTGGTATACTGAATTCCGATTGTTTTATTTTAAGAGTCCAACTGGGCTGATCACTGGCATGGTACAAGGAACTACAAGTCTCTTAAGTAATACAGTTTATGCATTTAGTGATGCTACCACTCAGTTCAGTAAAGCTGCGAGGAAGGTATTGGTCTGCAATGAGGAATGTCTGTAATCAAGTGGCTTTGATGTATCATTTCTTTATTGGATGCTTATATTTCTGCAGGGTATTGTCGCATTTACGTTTGATGATCAAGCTTTTTCAAGAATTGGGCAACAGCAGACAGGTGTTTCTTTAAACAGTGGTGGTGTCATTAGTGAAGTTTTAGAGGTACAACATTAGTATGTATACTTTTTTTTAACAGAAACCAAACTTTTCATTAATGAAACGAGTAAAAGGCTCAAAGTATAAATAA

mRNA sequence

atttatacatgtcctattgtaattgtacatctcagtctagcttttatgttccctatatatGTTCTTGGTTCTGCTGGTGTCATTGGTAATCCCATGGGATTTGCTAGGAGATTGGGGATTGGAATAAGAGATTTCTTGTCGGTGCCTGCTAAGACCATTTTGCAGAGTCCAACTGGGCTGATCACTGGCATGGTACAAGGAACTACAAGTCTCTTAAGTAATACAGTTTATGCATTTAGTGATGCTACCACTCAGTTCAGTAAAGCTGCGAGGAAGGGTATTGTCGCATTTACGTTTGATGATCAAGCTTTTTCAAGAATTGGGCAACAGCAGACAGGTGTTTCTTTAAACAGTGGTGGTGTCATTAGTGAAGTTTTAGAGAAACCAAACTTTTCATTAATGAAACGAGTAAAAGGCTCAAAGTATAAATAA

Coding sequence (CDS)

ATTTATACATGTCCTATTGTAATTGTACATCTCAGTCTAGCTTTTATGTTCCCTATATATGTTCTTGGTTCTGCTGGTGTCATTGGTAATCCCATGGGATTTGCTAGGAGATTGGGGATTGGAATAAGAGATTTCTTGTCGGTGCCTGCTAAGACCATTTTGCAGAGTCCAACTGGGCTGATCACTGGCATGGTACAAGGAACTACAAGTCTCTTAAGTAATACAGTTTATGCATTTAGTGATGCTACCACTCAGTTCAGTAAAGCTGCGAGGAAGGGTATTGTCGCATTTACGTTTGATGATCAAGCTTTTTCAAGAATTGGGCAACAGCAGACAGGTGTTTCTTTAAACAGTGGTGGTGTCATTAGTGAAGTTTTAGAGAAACCAAACTTTTCATTAATGAAACGAGTAAAAGGCTCAAAGTATAAATAA

Protein sequence

IYTCPIVIVHLSLAFMFPIYVLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLITGMVQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQAFSRIGQQQTGVSLNSGGVISEVLEKPNFSLMKRVKGSKYK*

Homology

[Close]

BLAST of Cucsa.356450 vs. Swiss-Prot
Match: VP13C_DICDI (Putative vacuolar protein sorting-associated protein 13C OS=Dictyostelium discoideum GN=tipC PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-11
Identity = 36/100 (36.00%), Postives = 59/100 (59.00%), Query Frame = 1


Query: 7    VIVHLSLAFMFPIY-----VLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLI 66
            VI  +SL F + +      + GS   IGNP+  A  LG G +DF   PA  +++SP    
Sbjct: 3500 VIDEISLHFSYQMMSQAHKIFGSFDFIGNPIRLAESLGSGFKDFFHEPALGLVKSPQDFA 3559

Query: 67   TGMVQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDD 102
             G+ +GT+SL++N+V+ F+D+T++ +    KG+V  + DD
Sbjct: 3560 AGLSKGTSSLINNSVFGFADSTSKITGTISKGLVQLSLDD 3599

[Close]

BLAST of Cucsa.356450 vs. Swiss-Prot
Match: VP13D_DICDI (Putative vacuolar protein sorting-associated protein 13D OS=Dictyostelium discoideum GN=vps13D PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10
Identity = 32/94 (34.04%), Postives = 54/94 (57.45%), Query Frame = 1


Query: 10   HLSLAFMFPIY-VLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLITGMVQGT 69
            H ++  +  +Y V+GS+  IGNP+G    +G G++DF   PA  ++ SP     G+ +G+
Sbjct: 4265 HYTMQSLNQLYKVIGSSDNIGNPVGLFNHIGTGVKDFFYEPALGLITSPKDFGKGLAKGS 4324

Query: 70   TSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQ 103
             SL+ N+VY   +  ++ S    KG+   +FDDQ
Sbjct: 4325 ISLVKNSVYGLFNTLSKLSNTVGKGVAILSFDDQ 4358

[Close]

BLAST of Cucsa.356450 vs. Swiss-Prot
Match: VP13A_DICDI (Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoideum GN=vps13A PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.7e-09
Identity = 33/129 (25.58%), Postives = 64/129 (49.61%), Query Frame = 1


Query: 21   VLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLITGMVQGTTSLLSNTVYAFS 80
            +LGS   +GNP+G  R  G G+ DF   PA+ +++SP     G+ +GT+S + N+V+   
Sbjct: 3045 ILGSVDFLGNPVGLFRNFGTGVHDFFVEPAQGLVKSPADFTKGLAKGTSSFVKNSVFGTF 3104

Query: 81   DATTQFSKAARKGIVAFTFDDQAFSRIGQQQT--------GVSLNSGGVISEVLEKPNFS 140
            +  ++ +     G+   +FD++        Q         G+++   G+   +L+     
Sbjct: 3105 NTLSKLTGTLGTGVATLSFDEKYLQERKLHQARKPSHVGEGLAMGGIGLGRGILQGITGI 3164

Query: 141  LMKRVKGSK 142
            + K V+G+K
Sbjct: 3165 VTKPVEGAK 3173

[Close]

BLAST of Cucsa.356450 vs. Swiss-Prot
Match: VP13B_HUMAN (Vacuolar protein sorting-associated protein 13B OS=Homo sapiens GN=VPS13B PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 4.9e-06
Identity = 25/120 (20.83%), Postives = 61/120 (50.83%), Query Frame = 1


Query: 20   YVLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLITGMVQGTTSLLSNTVYAF 79
            +V+GS  ++G+P    R +G G+ DF  +P + + + P   ++G+ +GTTS + +     
Sbjct: 3649 WVVGSLDILGSPASLVRSIGNGVADFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGT 3708

Query: 80   SDATTQFSKAARKGIVAFTFDDQAFSRIGQQQTGVSLNSGGVISEVLEKPNFSLMKRVKG 139
              + T  + +  + +   + D++ ++R  + +  +  + G  + + L +   SL+  + G
Sbjct: 3709 LTSITNLATSLARNMDRLSLDEEHYNRQEEWRRQLPESLGEGLRQGLSRLGISLLGAIAG 3768

[Close]

BLAST of Cucsa.356450 vs. Swiss-Prot
Match: VP13B_MOUSE (Vacuolar protein sorting-associated protein 13B OS=Mus musculus GN=Vps13b PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 4.9e-06
Identity = 26/120 (21.67%), Postives = 61/120 (50.83%), Query Frame = 1


Query: 20   YVLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLITGMVQGTTSLLSNTVYAF 79
            +V+GS  ++G+P    R +G GI DF  +P + + + P   ++G+ +GTTS + +     
Sbjct: 3641 WVVGSLEILGSPASLVRSIGNGISDFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGA 3700

Query: 80   SDATTQFSKAARKGIVAFTFDDQAFSRIGQQQTGVSLNSGGVISEVLEKPNFSLMKRVKG 139
              + T  + +  + +   + D++ ++R  + +  +  + G  + + L +   SL+  + G
Sbjct: 3701 LTSITNLATSLARNMGRLSLDEEHYNRQEEWRRQLPESLGEGLRQGLSRLGISLLGAIAG 3760

[Close]

BLAST of Cucsa.356450 vs. TrEMBL
Match: A0A0A0LY06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652800 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-44
Identity = 98/110 (89.09%), Postives = 102/110 (92.73%), Query Frame = 1


Query: 32  MGFARRLGIGIRDFLSVPAKTILQSPTGLITGMVQGTTSLLSNTVYAFSDATTQFSKAAR 91
           MGFARRLGIGIRDFLSVPAKTILQSPTGLITGMVQGTTSLLSNTVYAFSDATTQFSKAAR
Sbjct: 1   MGFARRLGIGIRDFLSVPAKTILQSPTGLITGMVQGTTSLLSNTVYAFSDATTQFSKAAR 60

Query: 92  KGIVAFTFDDQAFSRIGQQQTGVSLNSGGVISEVLEKPNFSLMKRVKGSK 142
           KGIVAFTFDDQAFSRIGQQQTGVSLNSGGVISEVLE     L   ++G++
Sbjct: 61  KGIVAFTFDDQAFSRIGQQQTGVSLNSGGVISEVLEGLTGLLQSPIRGAE 110

[Close]

BLAST of Cucsa.356450 vs. TrEMBL
Match: W9QCI9_9ROSA (Putative vacuolar protein sorting-associated protein 13C OS=Morus notabilis GN=L484_010461 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.6e-40
Identity = 94/137 (68.61%), Postives = 106/137 (77.37%), Query Frame = 1


Query: 6    IVIVHLSLAFMFPIY-VLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLITGM 65
            I I H +   +  +Y V GSAGVIGNPMGFAR LG+GIRDFLSVPA+TI QSPTGLITGM
Sbjct: 2934 IFIRHCTRQLLHEMYKVFGSAGVIGNPMGFARTLGLGIRDFLSVPARTIFQSPTGLITGM 2993

Query: 66   VQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQAFSRIGQQQTGVSLNSGGVISE 125
             QGTTSLL NTVYA SDA TQFSKAA KGIVAFTFDDQA S + Q QTGV+ +S GVI+E
Sbjct: 2994 AQGTTSLLRNTVYAVSDAATQFSKAAHKGIVAFTFDDQAVSGMEQLQTGVASHSKGVINE 3053

Query: 126  VLEKPNFSLMKRVKGSK 142
            VLE     L   +KG++
Sbjct: 3054 VLEGLTGLLQSPIKGAE 3070

[Close]

BLAST of Cucsa.356450 vs. TrEMBL
Match: A0A164ZBQ8_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018920 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.0e-39
Identity = 89/137 (64.96%), Postives = 108/137 (78.83%), Query Frame = 1


Query: 6    IVIVHLSLAFMFPIY-VLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLITGM 65
            I+I H    F+  IY V GSAGVIGNPMGFAR +G GIRDFLSVPAK+++++PTGL TGM
Sbjct: 3127 ILIRHYKGQFLHEIYKVFGSAGVIGNPMGFARSVGQGIRDFLSVPAKSLVKNPTGLFTGM 3186

Query: 66   VQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQAFSRIGQQQTGVSLNSGGVISE 125
             QGTTSLLSNTVYA SDATTQFS+AA KGIVAFTFDDQ+  R+ +QQ G+S +S GVISE
Sbjct: 3187 AQGTTSLLSNTVYAISDATTQFSRAAHKGIVAFTFDDQSAERMEKQQFGISSHSKGVISE 3246

Query: 126  VLEKPNFSLMKRVKGSK 142
            +LE     L   ++G++
Sbjct: 3247 ILEGLTGLLQSPIRGAE 3263

[Close]

BLAST of Cucsa.356450 vs. TrEMBL
Match: B9RXC4_RICCO (Vacuolar protein sorting-associated protein, putative OS=Ricinus communis GN=RCOM_0902510 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 8.8e-39
Identity = 90/123 (73.17%), Postives = 103/123 (83.74%), Query Frame = 1


Query: 6    IVIVHLSLAFMFPIY-VLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLITGM 65
            I+  H +   +  +Y V  SAGVIGNPMGFAR LG+GIRDFLSVPA++I+QSPTG+ITGM
Sbjct: 3092 ILTRHYTRQLLHEMYKVFASAGVIGNPMGFARNLGLGIRDFLSVPARSIMQSPTGIITGM 3151

Query: 66   VQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQAFSRIGQQQTGVSLNSGGVISE 125
             QGTTSLLSNTVYA SDA TQFSKAARKGIVAFTFDDQ  SR+ +QQ GVSL+S GVI+E
Sbjct: 3152 AQGTTSLLSNTVYALSDAATQFSKAARKGIVAFTFDDQ--SRMEKQQKGVSLHSKGVINE 3211

Query: 126  VLE 128
            VLE
Sbjct: 3212 VLE 3212

[Close]

BLAST of Cucsa.356450 vs. TrEMBL
Match: U5GUT8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s45980g PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 8.8e-39
Identity = 87/123 (70.73%), Postives = 103/123 (83.74%), Query Frame = 1


Query: 6    IVIVHLSLAFMFPIY-VLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLITGM 65
            I+I H +   +  +Y V GSAGVIGNPMGFAR LG+GIRDFLSVPA++ LQSPTGLITGM
Sbjct: 2327 ILIRHYTRQLLHEMYKVFGSAGVIGNPMGFARSLGLGIRDFLSVPARSFLQSPTGLITGM 2386

Query: 66   VQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQAFSRIGQQQTGVSLNSGGVISE 125
             QGTTSL+SNTVYA SDA TQFSKAA+KGIVAFTFDDQ+ +R+ +QQ G + +S GVI+E
Sbjct: 2387 AQGTTSLVSNTVYALSDAATQFSKAAQKGIVAFTFDDQSVARMEKQQKGAASHSKGVINE 2446

Query: 126  VLE 128
            VLE
Sbjct: 2447 VLE 2449

[Close]

BLAST of Cucsa.356450 vs. TAIR10
Match: AT5G24740.1 (AT5G24740.1 Protein of unknown function (DUF1162))

HSP 1 Score: 142.1 bits (357), Expect = 2.6e-34
Identity = 74/137 (54.01%), Postives = 95/137 (69.34%), Query Frame = 1


Query: 6    IVIVHLSLAFMFPIY-VLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLITGM 65
            I++ H +   +  IY V GSAGVIGNPMGFAR +  GI+DFLS P+++I +SP G+I GM
Sbjct: 3089 ILVGHYTRQILHEIYKVFGSAGVIGNPMGFARNVAFGIKDFLSAPSRSISKSPAGIIQGM 3148

Query: 66   VQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQAFSRIGQQQTGVSLNSGGVISE 125
              GTTSL S+T+YA SDA TQFSKAA KGIVAFTF+D   +R+ +QQ G    S GVI E
Sbjct: 3149 AHGTTSLFSSTIYALSDAATQFSKAAHKGIVAFTFNDHDVARMEKQQLGEGSRSKGVIGE 3208

Query: 126  VLEKPNFSLMKRVKGSK 142
            V E     L   ++G++
Sbjct: 3209 VFEGLTGLLQSPIRGAE 3225

[Close]

BLAST of Cucsa.356450 vs. NCBI nr
Match: gi|778664064|ref|XP_011660209.1| (PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 3.4e-52
Identity = 115/137 (83.94%), Postives = 120/137 (87.59%), Query Frame = 1


Query: 6    IVIVHLSLAFMFPIY-VLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLITGM 65
            I+I H S      IY VLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLITGM
Sbjct: 3101 ILIRHYSRQLFHEIYKVLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLITGM 3160

Query: 66   VQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQAFSRIGQQQTGVSLNSGGVISE 125
            VQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQAFSRIGQQQTGVSLNSGGVISE
Sbjct: 3161 VQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQAFSRIGQQQTGVSLNSGGVISE 3220

Query: 126  VLEKPNFSLMKRVKGSK 142
            VLE     L   ++G++
Sbjct: 3221 VLEGLTGLLQSPIRGAE 3237

[Close]

BLAST of Cucsa.356450 vs. NCBI nr
Match: gi|659085898|ref|XP_008443665.1| (PREDICTED: uncharacterized protein LOC103487213 isoform X1 [Cucumis melo])

HSP 1 Score: 211.1 bits (536), Expect = 1.3e-51
Identity = 114/137 (83.21%), Postives = 119/137 (86.86%), Query Frame = 1


Query: 6    IVIVHLSLAFMFPIY-VLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLITGM 65
            I+I H S      IY VLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLITGM
Sbjct: 1718 ILIRHYSRQLFHEIYKVLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLITGM 1777

Query: 66   VQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQAFSRIGQQQTGVSLNSGGVISE 125
            VQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQAFSRIGQ QTGVSLNSGGVISE
Sbjct: 1778 VQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQAFSRIGQHQTGVSLNSGGVISE 1837

Query: 126  VLEKPNFSLMKRVKGSK 142
            VLE     L   ++G++
Sbjct: 1838 VLEGLTGLLQSPIRGAE 1854

[Close]

BLAST of Cucsa.356450 vs. NCBI nr
Match: gi|700211552|gb|KGN66648.1| (hypothetical protein Csa_1G652800 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 1.5e-44
Identity = 98/110 (89.09%), Postives = 102/110 (92.73%), Query Frame = 1


Query: 32  MGFARRLGIGIRDFLSVPAKTILQSPTGLITGMVQGTTSLLSNTVYAFSDATTQFSKAAR 91
           MGFARRLGIGIRDFLSVPAKTILQSPTGLITGMVQGTTSLLSNTVYAFSDATTQFSKAAR
Sbjct: 1   MGFARRLGIGIRDFLSVPAKTILQSPTGLITGMVQGTTSLLSNTVYAFSDATTQFSKAAR 60

Query: 92  KGIVAFTFDDQAFSRIGQQQTGVSLNSGGVISEVLEKPNFSLMKRVKGSK 142
           KGIVAFTFDDQAFSRIGQQQTGVSLNSGGVISEVLE     L   ++G++
Sbjct: 61  KGIVAFTFDDQAFSRIGQQQTGVSLNSGGVISEVLEGLTGLLQSPIRGAE 110

[Close]

BLAST of Cucsa.356450 vs. NCBI nr
Match: gi|778664067|ref|XP_011660210.1| (PREDICTED: uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 2.0e-44
Identity = 100/114 (87.72%), Postives = 102/114 (89.47%), Query Frame = 1


Query: 6    IVIVHLSLAFMFPIY-VLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLITGM 65
            I+I H S      IY VLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLITGM
Sbjct: 3101 ILIRHYSRQLFHEIYKVLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLITGM 3160

Query: 66   VQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQAFSRIGQQQTGVSLNS 119
            VQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQAFSRIGQQQTG   +S
Sbjct: 3161 VQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQAFSRIGQQQTGAHWSS 3214

[Close]

BLAST of Cucsa.356450 vs. NCBI nr
Match: gi|659085900|ref|XP_008443666.1| (PREDICTED: uncharacterized protein LOC103487213 isoform X2 [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 7.7e-44
Identity = 99/114 (86.84%), Postives = 101/114 (88.60%), Query Frame = 1


Query: 6    IVIVHLSLAFMFPIY-VLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLITGM 65
            I+I H S      IY VLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLITGM
Sbjct: 1718 ILIRHYSRQLFHEIYKVLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLITGM 1777

Query: 66   VQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQAFSRIGQQQTGVSLNS 119
            VQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQAFSRIGQ QTG   +S
Sbjct: 1778 VQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQAFSRIGQHQTGAHWSS 1831

The following BLAST results are available for this feature:

BLAST of Cucsa.356450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VP13C_DICDI	1.0e-11	36.00	Putative vacuolar protein sorting-associated protein 13C OS=Dictyostelium discoi...	[more]
VP13D_DICDI	1.1e-10	34.04	Putative vacuolar protein sorting-associated protein 13D OS=Dictyostelium discoi...	[more]
VP13A_DICDI	4.7e-09	25.58	Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoi...	[more]
VP13B_HUMAN	4.9e-06	20.83	Vacuolar protein sorting-associated protein 13B OS=Homo sapiens GN=VPS13B PE=1 S...	[more]
VP13B_MOUSE	4.9e-06	21.67	Vacuolar protein sorting-associated protein 13B OS=Mus musculus GN=Vps13b PE=1 S...	[more]

BLAST of Cucsa.356450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY06_CUCSA	1.1e-44	89.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652800 PE=4 SV=1	[more]
W9QCI9_9ROSA	3.6e-40	68.61	Putative vacuolar protein sorting-associated protein 13C OS=Morus notabilis GN=L...	[more]
A0A164ZBQ8_DAUCA	4.0e-39	64.96	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018920 PE=4 SV=1	[more]
B9RXC4_RICCO	8.8e-39	73.17	Vacuolar protein sorting-associated protein, putative OS=Ricinus communis GN=RCO...	[more]
U5GUT8_POPTR	8.8e-39	70.73	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s45980g PE=4 SV=1	[more]

BLAST of Cucsa.356450 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G24740.1	2.6e-34	54.01	Protein of unknown function (DUF1162)	[more]

BLAST of Cucsa.356450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778664064\|ref\|XP_011660209.1\|	3.4e-52	83.94	PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus]	[more]
gi\|659085898\|ref\|XP_008443665.1\|	1.3e-51	83.21	PREDICTED: uncharacterized protein LOC103487213 isoform X1 [Cucumis melo]	[more]
gi\|700211552\|gb\|KGN66648.1\|	1.5e-44	89.09	hypothetical protein Csa_1G652800 [Cucumis sativus]	[more]
gi\|778664067\|ref\|XP_011660210.1\|	2.0e-44	87.72	PREDICTED: uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus]	[more]
gi\|659085900\|ref\|XP_008443666.1\|	7.7e-44	86.84	PREDICTED: uncharacterized protein LOC103487213 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026847	VPS13

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.356450.1	Cucsa.356450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026847	Vacuolar protein sorting-associated protein 13	PANTHER	PTHR16166	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	coord: 6..127 score: 3.0
None	No IPR available	PANTHER	PTHR16166:SF87	SUBFAMILY NOT NAMED	coord: 6..127 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.356450	Silver-seed gourd	carcgyB0613
Cucsa.356450	Silver-seed gourd	carcgyB1085
Cucsa.356450	Cucumber (Chinese Long) v3	cgycucB542
Cucsa.356450	Watermelon (97103) v2	cgywmbB608
Cucsa.356450	Wax gourd	cgywgoB711
Cucsa.356450	Cucurbita maxima (Rimu)	cgycmaB0969
Cucsa.356450	Cucurbita maxima (Rimu)	cgycmaB0970
Cucsa.356450	Cucurbita moschata (Rifu)	cgycmoB0972
Cucsa.356450	Cucurbita moschata (Rifu)	cgycmoB0973
Cucsa.356450	Wild cucumber (PI 183967)	cgycpiB528
Cucsa.356450	Cucumber (Chinese Long) v2	cgycuB500
Cucsa.356450	Melon (DHL92) v3.5.1	cgymeB574
Cucsa.356450	Watermelon (Charleston Gray)	cgywcgB605
Cucsa.356450	Watermelon (Charleston Gray)	cgywcgB607
Cucsa.356450	Watermelon (97103) v1	cgywmB638
Cucsa.356450	Cucurbita pepo (Zucchini)	cgycpeB0927
Cucsa.356450	Cucurbita pepo (Zucchini)	cgycpeB0928
Cucsa.356450	Bottle gourd (USVL1VR-Ls)	cgylsiB573
Cucsa.356450	Melon (DHL92) v3.6.1	cgymedB575