Cucsa.356440 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.356440
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionVacuolar protein sorting-associated protein, putative
Locationscaffold03577 : 1253719 .. 1254574 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGCTCACTGGTCTTCTTCAATCACCAATTAGAGGAGCTGAGAGACATGGTCTCCCAGGGGTGTTCTCAGGTAACTCACTTCAATATTATGGTTTTACCATTCTCTGAACCCACTGTGATTGCTAACTATTCTTTGGCTGCAGGCATTGCATTAGGAATCACAGGACTTGTGGCAAAACCAGCTGCCAGTGTTCTAGAACTTACTGGAAAAACTGCCCAGAGCATACGAAACAGAAGTAGGCTATATCAAATGAGACCACAGCGACTTAGAGTACGCCTTCCTCGTCCTTTGAGCACCATGCTTCCTCTGAGGCCTTACTCCTGGGAGGAAGCAATTGGATCATCGGTACTTCTAGAAGCAGGAGGAGATGACATGAAGCTCAGTGATGAAGTTTTAGTTGCCTGCAAAGCACTTAAACTAGCTGGAAAATTCGTTGTCATCACTCAGAGTCTAATATTAATTGTTAGCTGTGCAAGCTTAGTGGACTTGGGCAAGCCTGAATTTCGAGGCATTGCTGCTGATTCCAAATGGGTGATAGAGTCAGCTATTGGTTTGGACACTGTCATTCATGCTGACACAAATAACGATGGAACTGCCGTCCACATCGTCGGAAGCAGTTCCGATTTATTATCAAGGCCAAATAAATCTCTCCAGAAAAGAGTTATTGGGAGAAGTAGTAGGGCAGTGAGATGGACTGGTCCAACTCCTCTTCCTATTTTTGAGACAATCCTTGAACTGGAGCTCAAGGAAGATGCTGAAAACCTGTTGAAGACCTTGTTATCTGCAATCGAATTAGCCAAAGATTGGGGCTGGCACCGTGGTCGTCATGTTCTCCACCGATATGATGTAAAATAG

mRNA sequence

GGGCTCACTGGTCTTCTTCAATCACCAATTAGAGGAGCTGAGAGACATGGTCTCCCAGGGGTGTTCTCAGGCATTGCATTAGGAATCACAGGACTTGTGGCAAAACCAGCTGCCAGTGTTCTAGAACTTACTGGAAAAACTGCCCAGAGCATACGAAACAGAAGTAGGCTATATCAAATGAGACCACAGCGACTTAGAGTACGCCTTCCTCGTCCTTTGAGCACCATGCTTCCTCTGAGGCCTTACTCCTGGGAGGAAGCAATTGGATCATCGGTACTTCTAGAAGCAGGAGGAGATGACATGAAGCTCAGTGATGAAGTTTTAGTTGCCTGCAAAGCACTTAAACTAGCTGGAAAATTCGTTGTCATCACTCAGAGTCTAATATTAATTGTTAGCTGTGCAAGCTTAGTGGACTTGGGCAAGCCTGAATTTCGAGGCATTGCTGCTGATTCCAAATGGGTGATAGAGTCAGCTATTGGTTTGGACACTGTCATTCATGCTGACACAAATAACGATGGAACTGCCGTCCACATCGTCGGAAGCAGTTCCGATTTATTATCAAGGCCAAATAAATCTCTCCAGAAAAGAGTTATTGGGAGAAGTAGTAGGGCAGTGAGATGGACTGGTCCAACTCCTCTTCCTATTTTTGAGACAATCCTTGAACTGGAGCTCAAGGAAGATGCTGAAAACCTGTTGAAGACCTTGTTATCTGCAATCGAATTAGCCAAAGATTGGGGCTGGCACCGTGGTCGTCATGTTCTCCACCGATATGATGTAAAATAG

Coding sequence (CDS)

GGGCTCACTGGTCTTCTTCAATCACCAATTAGAGGAGCTGAGAGACATGGTCTCCCAGGGGTGTTCTCAGGCATTGCATTAGGAATCACAGGACTTGTGGCAAAACCAGCTGCCAGTGTTCTAGAACTTACTGGAAAAACTGCCCAGAGCATACGAAACAGAAGTAGGCTATATCAAATGAGACCACAGCGACTTAGAGTACGCCTTCCTCGTCCTTTGAGCACCATGCTTCCTCTGAGGCCTTACTCCTGGGAGGAAGCAATTGGATCATCGGTACTTCTAGAAGCAGGAGGAGATGACATGAAGCTCAGTGATGAAGTTTTAGTTGCCTGCAAAGCACTTAAACTAGCTGGAAAATTCGTTGTCATCACTCAGAGTCTAATATTAATTGTTAGCTGTGCAAGCTTAGTGGACTTGGGCAAGCCTGAATTTCGAGGCATTGCTGCTGATTCCAAATGGGTGATAGAGTCAGCTATTGGTTTGGACACTGTCATTCATGCTGACACAAATAACGATGGAACTGCCGTCCACATCGTCGGAAGCAGTTCCGATTTATTATCAAGGCCAAATAAATCTCTCCAGAAAAGAGTTATTGGGAGAAGTAGTAGGGCAGTGAGATGGACTGGTCCAACTCCTCTTCCTATTTTTGAGACAATCCTTGAACTGGAGCTCAAGGAAGATGCTGAAAACCTGTTGAAGACCTTGTTATCTGCAATCGAATTAGCCAAAGATTGGGGCTGGCACCGTGGTCGTCATGTTCTCCACCGATATGATGTAAAATAG

Protein sequence

GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQMRPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKFVVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGLDTVIHADTNNDGTAVHIVGSSSDLLSRPNKSLQKRVIGRSSRAVRWTGPTPLPIFETILELELKEDAENLLKTLLSAIELAKDWGWHRGRHVLHRYDVK*
Homology
[Close]
BLAST of Cucsa.356440 vs. Swiss-Prot
Match: VP13B_DICDI (Putative vacuolar protein sorting-associated protein 13B OS=Dictyostelium discoideum GN=vps13B PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-14
Identity = 46/141 (32.62%), Postives = 80/141 (56.74%), Query Frame = 1 

Query: 1    GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM 60
            G+ G+++ P+RGA + GL G F G   G+ G+  KP   V +   KT++ IRN + ++  
Sbjct: 5834 GVFGIVEHPVRGAMQEGLLGFFKGCGKGVLGIAVKPVTGVFDFASKTSEGIRNNTNIH-- 5893

Query: 61   RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKF 120
             P+R R+R PR ++   P++ YS +E+ G + LL+   DD+  S+   ++    K+  KF
Sbjct: 5894 -PERFRLRTPRFINPREPIKEYSVDESEG-NFLLKKNSDDINKSEGNPLSS---KMEYKF 5953

Query: 121  VVITQSLILIVSCASLVDLGK 142
             V+     L+++  SL+ L K
Sbjct: 5954 HVVLPDCTLLLTSHSLICLSK 5967

[Close]
BLAST of Cucsa.356440 vs. Swiss-Prot
Match: VP13A_DICDI (Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoideum GN=vps13A PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.0e-09
Identity = 35/96 (36.46%), Postives = 54/96 (56.25%), Query Frame = 1 

Query: 1    GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM 60
            G+TG++  P+ GA++ G  G   G+A G+ G+  KP  +V++L  KT + I+N + L   
Sbjct: 3160 GITGIVTKPVEGAKKGGFAGFAKGLAQGVVGVAVKPTTAVIDLATKTTEGIKNTTNL--- 3219

Query: 61   RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEA 97
            + Q  RVR PR  S    LRP+   E+ G  +L  A
Sbjct: 3220 QSQAERVRPPRCFSHDNVLRPFDEVESEGWFLLKTA 3252

[Close]
BLAST of Cucsa.356440 vs. Swiss-Prot
Match: VP13E_DICDI (Putative vacuolar protein sorting-associated protein 13E OS=Dictyostelium discoideum GN=vps13E PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.5e-08
Identity = 33/94 (35.11%), Postives = 49/94 (52.13%), Query Frame = 1 

Query: 1    GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM 60
            G +G ++ P  G +  G  GV  GI  G  GLV KP A+  +   K ++ I+N +   Q+
Sbjct: 3583 GFSGFVKLPYEGGKEAGPKGVVKGIGKGTAGLVLKPIAAGFDFASKVSEGIKNST---QL 3642

Query: 61   RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLL 95
              +R R+R PRPL +  PL  Y   E+ G  + L
Sbjct: 3643 SIERKRIRFPRPLFSDSPLETYDSAESYGHFLFL 3673

[Close]
BLAST of Cucsa.356440 vs. Swiss-Prot
Match: VP13C_MOUSE (Vacuolar protein sorting-associated protein 13C OS=Mus musculus GN=Vps13c PE=1 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 4.2e-08
Identity = 30/93 (32.26%), Postives = 52/93 (55.91%), Query Frame = 1 

Query: 1    GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM 60
            G+TG++  P+ GA++ G  G F GI  G+ G VA+P   ++++   T Q I+   R+ + 
Sbjct: 3526 GVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAVARPTGGIIDMASSTFQGIQ---RVAES 3585

Query: 61   RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVL 94
              +   +R PR +     +RPY  +E+ GS +L
Sbjct: 3586 TEEVSSLRPPRLIHEDGIIRPYDRQESEGSDLL 3615

[Close]
BLAST of Cucsa.356440 vs. Swiss-Prot
Match: VP13C_HUMAN (Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.4e-08
Identity = 30/93 (32.26%), Postives = 51/93 (54.84%), Query Frame = 1 

Query: 1    GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM 60
            G+TG++  P+ GA++ G  G F GI  G+ G VA+P   ++++   T Q I+   R  + 
Sbjct: 3531 GVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAVARPTGGIVDMASSTFQGIQ---RAAES 3590

Query: 61   RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVL 94
              +   +R PR +     +RPY  +E+ GS +L
Sbjct: 3591 TEEVSSLRPPRLIHEDGIIRPYDRQESEGSDLL 3620

[Close]
BLAST of Cucsa.356440 vs. TrEMBL
Match: A0A0A0LY06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652800 PE=4 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 1.3e-141
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 1 

Query: 1   GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM 60
           GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM
Sbjct: 97  GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM 156

Query: 61  RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKF 120
           RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKF
Sbjct: 157 RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKF 216

Query: 121 VVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGLDTVIHADTNNDGTAVHIVG 180
           VVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGLDTVIHADTNNDGTAVHIVG
Sbjct: 217 VVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGLDTVIHADTNNDGTAVHIVG 276

Query: 181 SSSDLLSRPNKSLQKRVIGRSSRAVRWTGPTPLPIFETILELELKEDAENLLKTLLSAIE 240
           SSSDLLSRPNKSLQKRVIGRSSRAVRWTGPTPLPIFETILELELKEDAENLLKTLLSAIE
Sbjct: 277 SSSDLLSRPNKSLQKRVIGRSSRAVRWTGPTPLPIFETILELELKEDAENLLKTLLSAIE 336

Query: 241 LAKDWGWHRGRHVLHRYDVK 261
           LAKDWGWHRGRHVLHRYDVK
Sbjct: 337 LAKDWGWHRGRHVLHRYDVK 356

[Close]
BLAST of Cucsa.356440 vs. TrEMBL
Match: W9QCI9_9ROSA (Putative vacuolar protein sorting-associated protein 13C OS=Morus notabilis GN=L484_010461 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 4.0e-90
Identity = 184/260 (70.77%), Postives = 210/260 (80.77%), Query Frame = 1 

Query: 1    GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM 60
            GLTGLLQSPI+GAE+HGLPGV SGIALG+TGLVAKPAAS+L++TGKTAQSIRNRSRLYQM
Sbjct: 3057 GLTGLLQSPIKGAEKHGLPGVLSGIALGVTGLVAKPAASILQVTGKTAQSIRNRSRLYQM 3116

Query: 61   RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKF 120
              QR RVR PRPLS   PLRPYSWEEA+G+SVL EA GD +KL DEVLVACKALK AGKF
Sbjct: 3117 ARQRFRVRFPRPLSREAPLRPYSWEEALGTSVLAEA-GDGVKLKDEVLVACKALKQAGKF 3176

Query: 121  VVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGLDTVIHADTNNDGTAVHIVG 180
            VVIT+ LILIVSC+ LVDLGKPEFRGI AD +WV+ES IGL+TV+HAD++     VHIVG
Sbjct: 3177 VVITERLILIVSCSRLVDLGKPEFRGIPADLEWVVESEIGLETVMHADSHQG--VVHIVG 3236

Query: 181  SSSDLLSRPNKSLQKRVIGRSSRAVRWTGPTPLPIFETILELELKEDAENLLKTLLSAIE 240
            SSSD LSR N    +R  G S  +VRW  PT LP+ +T LELE  EDAENLL+ L SAIE
Sbjct: 3237 SSSDTLSRQN----QRAKGGSGTSVRWNSPT-LPLIQTNLELEHTEDAENLLEILSSAIE 3296

Query: 241  LAKDWGWHRGRHVLHRYDVK 261
              K+ GW R R++LHR  +K
Sbjct: 3297 RGKNQGWGR-RYLLHRSGIK 3307

[Close]
BLAST of Cucsa.356440 vs. TrEMBL
Match: M5XBH4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000018mg PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 2.1e-83
Identity = 169/260 (65.00%), Postives = 204/260 (78.46%), Query Frame = 1 

Query: 1    GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM 60
            GLTGLLQSPI+GAERHGLPGV SGIALGITGLVAKPAAS+LE+TGKTAQSIRNRSR YQM
Sbjct: 2337 GLTGLLQSPIKGAERHGLPGVLSGIALGITGLVAKPAASILEVTGKTAQSIRNRSRFYQM 2396

Query: 61   RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKF 120
              QR RVRLPRPLS  LPLRPY+WEEA+G+S L+EA  D  +L DE+LV CK L+ AGKF
Sbjct: 2397 GQQRFRVRLPRPLSRELPLRPYTWEEAVGASALVEA-DDSFRLKDEILVMCKELRQAGKF 2456

Query: 121  VVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGLDTVIHADTNNDGTAVHIVG 180
            V+IT  L+LIVSC+SL+DLGKPEFRG+ AD +WVIES + L++VIHAD   D   VHIVG
Sbjct: 2457 VIITHRLVLIVSCSSLLDLGKPEFRGVPADLEWVIESEVRLESVIHADC--DQGVVHIVG 2516

Query: 181  SSSDLLSRPNKSLQKRVIGRSSRAVRWTGPTPLPIFETILELELKEDAENLLKTLLSAIE 240
            SSS++  R N+  ++      + A RW  PT +P+ +T LEL  +EDAENLL+ LLS IE
Sbjct: 2517 SSSNIPLRQNQQAKR---SSGTGAGRWNNPT-VPLIQTNLELAHQEDAENLLQNLLSTIE 2576

Query: 241  LAKDWGWHRGRHVLHRYDVK 261
            L K+ GW   R++LHR ++K
Sbjct: 2577 LGKEQGW-GCRYLLHRSNIK 2588

[Close]
BLAST of Cucsa.356440 vs. TrEMBL
Match: F6I5I0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00240 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 3.1e-82
Identity = 165/261 (63.22%), Postives = 204/261 (78.16%), Query Frame = 1 

Query: 1    GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM 60
            GLTGLLQSPI+GAE+HGLPGV SG+ALG+TGLVA+PAAS+LE+TGKTAQSIRNRSRLYQM
Sbjct: 2243 GLTGLLQSPIKGAEKHGLPGVLSGVALGLTGLVARPAASILEVTGKTAQSIRNRSRLYQM 2302

Query: 61   RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKF 120
              +RLRVRLPRPLS  LPL PYSWEEA+G+SVL +A  D+++L +EVL+ CKALK  GKF
Sbjct: 2303 GARRLRVRLPRPLSRELPLMPYSWEEAVGASVLADA-DDELRLKEEVLITCKALKQDGKF 2362

Query: 121  VVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGLDTVIHADTNNDGTAVHIVG 180
             +IT+ LILIVSC+SLV LGKPEF+G+ A  +WVIE+ IGL++VIHADT  D   +HIVG
Sbjct: 2363 FIITERLILIVSCSSLVGLGKPEFQGVPATPEWVIEAEIGLESVIHADT--DDAVIHIVG 2422

Query: 181  SSSDLLSRPNKSLQKRVIGRSSRAVRWTG-PTPLPIFETILELELKEDAENLLKTLLSAI 240
            SSS+ +       Q++  G   R  +W   PTPLP F+T LE   KEDAE LL+ LLSAI
Sbjct: 2423 SSSETMLGQTHQPQRKSTG--MRTKQWNNPPTPLPFFQTSLEFVCKEDAEELLQILLSAI 2482

Query: 241  ELAKDWGWHRGRHVLHRYDVK 261
            E  K+ GW  G ++LH+ ++K
Sbjct: 2483 EQGKERGWGSG-YLLHQSNLK 2497

[Close]
BLAST of Cucsa.356440 vs. TrEMBL
Match: A0A067EG91_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0000281mg PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 4.0e-82
Identity = 169/261 (64.75%), Postives = 203/261 (77.78%), Query Frame = 1 

Query: 1    GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM 60
            GLTGLLQSPI+ AE+HGLPG+ SGIA G+TGLVA+PAAS+LE+TGKTAQSIRNRSRL++ 
Sbjct: 2695 GLTGLLQSPIKEAEKHGLPGLLSGIAFGVTGLVARPAASILEVTGKTAQSIRNRSRLHRT 2754

Query: 61   RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKF 120
            R QR RVRLPRPLS  LPL PYSWEEAIG++VL+E   D +K  DEV V CKALK AGKF
Sbjct: 2755 RSQRYRVRLPRPLSRELPLAPYSWEEAIGTTVLMEV-DDGLKYKDEVPVMCKALKQAGKF 2814

Query: 121  VVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGLDTVIHADTNNDGTAVHIVG 180
             VIT+ LILIVSC+SLVDLGKPEF+G+AAD  WV+ES I LD++IHADT ++GT VHIVG
Sbjct: 2815 AVITERLILIVSCSSLVDLGKPEFQGVAADPDWVVESEISLDSIIHADT-DEGT-VHIVG 2874

Query: 181  SSSDLLSRPNKSLQKRVIGRSSRAVRWTGP-TPLPIFETILELELKEDAENLLKTLLSAI 240
            SSSD LSR N+   KR  G  +R   W  P TPLP+F+T LEL  +EDA+ L+  LL  I
Sbjct: 2875 SSSDGLSRQNQHQSKR--GSGTRTKWWNNPSTPLPLFQTNLELTSEEDAKELVHVLLDTI 2934

Query: 241  ELAKDWGWHRGRHVLHRYDVK 261
            E  K  GW  G ++LH+  ++
Sbjct: 2935 ERGKGRGWGSG-YLLHQISIR 2949

[Close]
BLAST of Cucsa.356440 vs. TAIR10
Match: AT5G24740.1 (AT5G24740.1 Protein of unknown function (DUF1162))

HSP 1 Score: 265.4 bits (677), Expect = 3.7e-71
Identity = 145/259 (55.98%), Postives = 180/259 (69.50%), Query Frame = 1 

Query: 1    GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM 60
            GLTGLLQSPIRGAE+HGLPGV SG+A+GITGLVA+P AS+LE+TGKTAQSIRNRSR++ +
Sbjct: 3212 GLTGLLQSPIRGAEKHGLPGVISGVAMGITGLVARPTASILEVTGKTAQSIRNRSRIHNI 3271

Query: 61   RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKF 120
            R QR R+RLPRPLS   PLRPYSWEEA+G++VL+E  GD +K   E LV CKALK  G F
Sbjct: 3272 RSQRHRLRLPRPLSREQPLRPYSWEEAVGTAVLMEV-GDSLKFKGEKLVKCKALKQEGAF 3331

Query: 121  VVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGLDTVIHADTNNDGTAVHIVG 180
            VVIT  L+L++S  SLVD  K  F G+  D  W IE  IGL++VIH D +  G  V I+G
Sbjct: 3332 VVITGRLVLVLSSLSLVDFRKQGFLGVPIDLVWNIEREIGLESVIHTDCS--GGVVRIIG 3391

Query: 181  SSSDLLSRPNKSLQKRVIGRSSRAVRWTGPTPLPIFETILELELKEDAENLLKTLLSAIE 240
            S+SD +    +  QK+    S    RW  P+  P+ +T LE   +E+AE+LL  LLS IE
Sbjct: 3392 SNSDGVWNWRQDQQKK---SSPTKKRWNNPSAQPLLQTNLEFPSEEEAEDLLSVLLSTIE 3451

Query: 241  LAKDWGWHRGRHVLHRYDV 260
              K   WH  R VL R ++
Sbjct: 3452 TGKSRSWH-SRFVLSRSNI 3463

[Close]
BLAST of Cucsa.356440 vs. TAIR10
Match: AT1G48090.1 (AT1G48090.1 calcium-dependent lipid-binding family protein)

HSP 1 Score: 59.3 bits (142), Expect = 4.1e-09
Identity = 43/126 (34.13%), Postives = 61/126 (48.41%), Query Frame = 1 

Query: 1    GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKT---AQSIRNR-SR 60
            G+TG+L  P+ GA+  G+ G  SG   GI G  A+P + VL+L  KT   A ++R + + 
Sbjct: 3858 GVTGILTKPLEGAKSSGVEGFVSGFGKGIIGAAAQPVSGVLDLLSKTTEGANAMRMKIAA 3917

Query: 61   LYQMRPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKL 120
                  Q LR RLPR +     LRPY+   A G  +L       +  S   L      K+
Sbjct: 3918 AITSDEQLLRRRLPRAVGADSLLRPYNDYRAQGQVIL------QLAESGSFLGQVDLFKV 3977

Query: 121  AGKFVV 123
             GKF +
Sbjct: 3978 RGKFAL 3977

[Close]
BLAST of Cucsa.356440 vs. NCBI nr
Match: gi|778664064|ref|XP_011660209.1| (PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus])

HSP 1 Score: 510.4 bits (1313), Expect = 1.9e-141
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 1 

Query: 1    GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM 60
            GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM
Sbjct: 3224 GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM 3283

Query: 61   RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKF 120
            RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKF
Sbjct: 3284 RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKF 3343

Query: 121  VVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGLDTVIHADTNNDGTAVHIVG 180
            VVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGLDTVIHADTNNDGTAVHIVG
Sbjct: 3344 VVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGLDTVIHADTNNDGTAVHIVG 3403

Query: 181  SSSDLLSRPNKSLQKRVIGRSSRAVRWTGPTPLPIFETILELELKEDAENLLKTLLSAIE 240
            SSSDLLSRPNKSLQKRVIGRSSRAVRWTGPTPLPIFETILELELKEDAENLLKTLLSAIE
Sbjct: 3404 SSSDLLSRPNKSLQKRVIGRSSRAVRWTGPTPLPIFETILELELKEDAENLLKTLLSAIE 3463

Query: 241  LAKDWGWHRGRHVLHRYDVK 261
            LAKDWGWHRGRHVLHRYDVK
Sbjct: 3464 LAKDWGWHRGRHVLHRYDVK 3483

[Close]
BLAST of Cucsa.356440 vs. NCBI nr
Match: gi|700211552|gb|KGN66648.1| (hypothetical protein Csa_1G652800 [Cucumis sativus])

HSP 1 Score: 510.4 bits (1313), Expect = 1.9e-141
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 1 

Query: 1   GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM 60
           GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM
Sbjct: 97  GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM 156

Query: 61  RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKF 120
           RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKF
Sbjct: 157 RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKF 216

Query: 121 VVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGLDTVIHADTNNDGTAVHIVG 180
           VVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGLDTVIHADTNNDGTAVHIVG
Sbjct: 217 VVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGLDTVIHADTNNDGTAVHIVG 276

Query: 181 SSSDLLSRPNKSLQKRVIGRSSRAVRWTGPTPLPIFETILELELKEDAENLLKTLLSAIE 240
           SSSDLLSRPNKSLQKRVIGRSSRAVRWTGPTPLPIFETILELELKEDAENLLKTLLSAIE
Sbjct: 277 SSSDLLSRPNKSLQKRVIGRSSRAVRWTGPTPLPIFETILELELKEDAENLLKTLLSAIE 336

Query: 241 LAKDWGWHRGRHVLHRYDVK 261
           LAKDWGWHRGRHVLHRYDVK
Sbjct: 337 LAKDWGWHRGRHVLHRYDVK 356

[Close]
BLAST of Cucsa.356440 vs. NCBI nr
Match: gi|659085898|ref|XP_008443665.1| (PREDICTED: uncharacterized protein LOC103487213 isoform X1 [Cucumis melo])

HSP 1 Score: 499.2 bits (1284), Expect = 4.4e-138
Identity = 254/260 (97.69%), Postives = 256/260 (98.46%), Query Frame = 1 

Query: 1    GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM 60
            GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM
Sbjct: 1841 GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM 1900

Query: 61   RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKF 120
            RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKF
Sbjct: 1901 RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKF 1960

Query: 121  VVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGLDTVIHADTNNDGTAVHIVG 180
            VVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGL+TVIHADTN DGT VHIVG
Sbjct: 1961 VVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGLETVIHADTNKDGTVVHIVG 2020

Query: 181  SSSDLLSRPNKSLQKRVIGRSSRAVRWTGPTPLPIFETILELELKEDAENLLKTLLSAIE 240
            SSSDLLSRPNKS+QKRVIGRSS AVRWTGPTPLPIFETILELELKEDAENLLK LLSAIE
Sbjct: 2021 SSSDLLSRPNKSVQKRVIGRSSTAVRWTGPTPLPIFETILELELKEDAENLLKILLSAIE 2080

Query: 241  LAKDWGWHRGRHVLHRYDVK 261
            LAKDWGWHRGRHVLHRYDVK
Sbjct: 2081 LAKDWGWHRGRHVLHRYDVK 2100

[Close]
BLAST of Cucsa.356440 vs. NCBI nr
Match: gi|703063985|ref|XP_010087089.1| (Putative vacuolar protein sorting-associated protein 13C [Morus notabilis])

HSP 1 Score: 339.3 bits (869), Expect = 5.8e-90
Identity = 184/260 (70.77%), Postives = 210/260 (80.77%), Query Frame = 1 

Query: 1    GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM 60
            GLTGLLQSPI+GAE+HGLPGV SGIALG+TGLVAKPAAS+L++TGKTAQSIRNRSRLYQM
Sbjct: 3057 GLTGLLQSPIKGAEKHGLPGVLSGIALGVTGLVAKPAASILQVTGKTAQSIRNRSRLYQM 3116

Query: 61   RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKF 120
              QR RVR PRPLS   PLRPYSWEEA+G+SVL EA GD +KL DEVLVACKALK AGKF
Sbjct: 3117 ARQRFRVRFPRPLSREAPLRPYSWEEALGTSVLAEA-GDGVKLKDEVLVACKALKQAGKF 3176

Query: 121  VVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGLDTVIHADTNNDGTAVHIVG 180
            VVIT+ LILIVSC+ LVDLGKPEFRGI AD +WV+ES IGL+TV+HAD++     VHIVG
Sbjct: 3177 VVITERLILIVSCSRLVDLGKPEFRGIPADLEWVVESEIGLETVMHADSHQG--VVHIVG 3236

Query: 181  SSSDLLSRPNKSLQKRVIGRSSRAVRWTGPTPLPIFETILELELKEDAENLLKTLLSAIE 240
            SSSD LSR N    +R  G S  +VRW  PT LP+ +T LELE  EDAENLL+ L SAIE
Sbjct: 3237 SSSDTLSRQN----QRAKGGSGTSVRWNSPT-LPLIQTNLELEHTEDAENLLEILSSAIE 3296

Query: 241  LAKDWGWHRGRHVLHRYDVK 261
              K+ GW R R++LHR  +K
Sbjct: 3297 RGKNQGWGR-RYLLHRSGIK 3307

[Close]
BLAST of Cucsa.356440 vs. NCBI nr
Match: gi|657962676|ref|XP_008372939.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103436293 [Malus domestica])

HSP 1 Score: 324.7 bits (831), Expect = 1.5e-85
Identity = 175/260 (67.31%), Postives = 208/260 (80.00%), Query Frame = 1 

Query: 1    GLTGLLQSPIRGAERHGLPGVFSGIALGITGLVAKPAASVLELTGKTAQSIRNRSRLYQM 60
            GLTGLLQSPI+GAE+HGLPGV SGIALGITGLVAKPAAS+LE+TGKTAQSIRNRSRLYQM
Sbjct: 2709 GLTGLLQSPIKGAEKHGLPGVLSGIALGITGLVAKPAASILEVTGKTAQSIRNRSRLYQM 2768

Query: 61   RPQRLRVRLPRPLSTMLPLRPYSWEEAIGSSVLLEAGGDDMKLSDEVLVACKALKLAGKF 120
              QRLRVRLPRPLS  LPLRPYSWE+A+G+SVL+EA  D ++L DE+LV CK L+ AGKF
Sbjct: 2769 GQQRLRVRLPRPLSRELPLRPYSWEDAVGTSVLVEA-DDSLRLKDEILVMCKELRQAGKF 2828

Query: 121  VVITQSLILIVSCASLVDLGKPEFRGIAADSKWVIESAIGLDTVIHADTNNDGTAVHIVG 180
            V+ITQ L+LIVSC++LVDLGKPEFRG+ AD  WVIES I L++VIHAD   D   VHIVG
Sbjct: 2829 VIITQRLVLIVSCSNLVDLGKPEFRGVPADLNWVIESEICLESVIHADC--DEGVVHIVG 2888

Query: 181  SSSDLLSRPNKSLQKRVIGRSSRAVRWTGPTPLPIFETILELELKEDAENLLKTLLSAIE 240
            SSSD   R N   Q+      +RAVRW  PT +P+ +T LEL  K++A+NLL+ LLSAIE
Sbjct: 2889 SSSDAPLRQN---QQTKSSSGTRAVRWNNPT-VPLVQTNLELARKDBADNLLQILLSAIE 2948

Query: 241  LAKDWGWHRGRHVLHRYDVK 261
            L K+ GW   R++L R ++K
Sbjct: 2949 LGKEHGW-GCRYLLQRSNIK 2960

The following BLAST results are available for this feature:
BLAST of Cucsa.356440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
VP13B_DICDI1.4e-1432.62Putative vacuolar protein sorting-associated protein 13B OS=Dictyostelium discoi... [more]
VP13A_DICDI5.0e-0936.46Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoi... [more]
VP13E_DICDI2.5e-0835.11Putative vacuolar protein sorting-associated protein 13E OS=Dictyostelium discoi... [more]
VP13C_MOUSE4.2e-0832.26Vacuolar protein sorting-associated protein 13C OS=Mus musculus GN=Vps13c PE=1 S... [more]
VP13C_HUMAN9.4e-0832.26Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 S... [more]
BLAST of Cucsa.356440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LY06_CUCSA1.3e-141100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652800 PE=4 SV=1[more]
W9QCI9_9ROSA4.0e-9070.77Putative vacuolar protein sorting-associated protein 13C OS=Morus notabilis GN=L... [more]
M5XBH4_PRUPE2.1e-8365.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000018mg PE=4 SV=1[more]
F6I5I0_VITVI3.1e-8263.22Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00240 PE=4 SV=... [more]
A0A067EG91_CITSI4.0e-8264.75Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0000281mg PE=4 SV=1[more]
BLAST of Cucsa.356440 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G24740.13.7e-7155.98 Protein of unknown function (DUF1162)[more]
AT1G48090.14.1e-0934.13 calcium-dependent lipid-binding family protein[more]
BLAST of Cucsa.356440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778664064|ref|XP_011660209.1|1.9e-141100.00PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus][more]
gi|700211552|gb|KGN66648.1|1.9e-141100.00hypothetical protein Csa_1G652800 [Cucumis sativus][more]
gi|659085898|ref|XP_008443665.1|4.4e-13897.69PREDICTED: uncharacterized protein LOC103487213 isoform X1 [Cucumis melo][more]
gi|703063985|ref|XP_010087089.1|5.8e-9070.77Putative vacuolar protein sorting-associated protein 13C [Morus notabilis][more]
gi|657962676|ref|XP_008372939.1|1.5e-8567.31PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103436293 [Malus dome... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026847VPS13
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.356440.1Cucsa.356440.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026847Vacuolar protein sorting-associated protein 13PANTHERPTHR16166VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13coord: 1..256
score: 1.1E
NoneNo IPR availablePANTHERPTHR16166:SF87SUBFAMILY NOT NAMEDcoord: 1..256
score: 1.1E