Cucsa.356360 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.356360
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionPolygalacturonase
Locationscaffold03577 : 1124260 .. 1125746 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGAGCCTGGGGTAGGAAACATCACCGTTGCCAATGCAATATTTTACGGTACTCAAAATGGCCTGAGAATAAAGTCATGGGCCAGACCCAGCACTGGCTTTGTGTACGGAGTTCAATTTCTTGGAGCCACCATGCATAATGTCCAAAACCCAATTCTCATTGATCAACACTACTGCCCCAACAACTTTGACTGTCCTGATCAGGTATCAGTCAAATATCTATCAAAATTTATCACTAATAGATGATATAACAAATACTGATTTATCACTCACAAAACATAAGAGTCTATTAGTGATATACTTTACTATATTTGTAATTTTTTtAAAATATTGCTACACAGTTAGGGTGTGTTTGGTTGAGATTATAAAGTGTTTAGTAGTGTTCGACAAATTAAAAAAAaTGCATTTTCTAAAAATTCATTTATAAAATAATCTATAAAATCCAAACATTAAGTGTTTAAATTTTAAACTCATTTTTGAAAAAGTGTTTAAAAGAAAATGTATTATTGAAAAACATTTTGTTCTTAATTCAATCCAAACGGACCCTTAATAATTATTCTAAAAATTACTACTTATTATGATTACCATTTTTTTtCTAAACAATGTCCAATGTGTTTAACACAACAATGGTAAAATTTAGGTCGGACTTCTCATCTATAAAGTAGAATGTCATATCAATTGCTACTAAACTAAATTCAGTTTGACAACAAATATCTAACCAATAATTAATAATGTATCGTCTATCATATTTTGATTCAAATAAGAAAAAAAaGTGAACTAACATTTTAAAATATGGTTTTTtAAATTTTAATATGTAAATTTGTTTAAGGGATATTTTTAAAAATAGCAAAATAATTTAAAATATTTAGAAGTTATAACAAAATTTTGAATTACTTCAATGATAGTCTTCTATCACTATAGTATATAAAAAACTACTGATGATAGAATTTGCTATAGGTTCGTAAATATTTTATAAATTTTGCTATTTTCAACTTCATGTTTAATGTTTTTTAAAATATATCATTTGTTTATTTTGCAAAAGTGAAGTAATAATTGATATCAAGTGCTCTTCCAGGTTGGGCCAAATAAAACATCCAACTCATCTTATTTTTTTtAGTATCTAACAATTTTCCAATAGTTATTTTACTTTATTTACAAGTTTTAAGCTTTGAAGGCAGAATAATATAATTTGGATGAGCTTATTGTTGTTTGAGCAATATCCACACACTTTCTTAAAATATTTAACTATGATTTGATAACAGGAATCAGGAATCAAGATAAGTAATATAATCTATAAAGACATTGTAGGAACTTCAGCAACACCAATTGCCATAAAATTTGATTGTAGTTCAAAAAACCCTTGCAATGGAATAAGACTTGAAGATGTTCGCTTGACATACCAAAATGAAGAAGCTAAATCCTCTTGTGAATATGCAAAGGGGAAAACATTAGGTTTAGTTCAACCAGAAGGTTGTTTTGAATGA

mRNA sequence

ATGAACGAGCCTGGGGTAGGAAACATCACCGTTGCCAATGCAATATTTTACGGTACTCAAAATGGCCTGAGAATAAAGTCATGGGCCAGACCCAGCACTGGCTTTGTGTACGGAGTTCAATTTCTTGGAGCCACCATGCATAATGTCCAAAACCCAATTCTCATTGATCAACACTACTGCCCCAACAACTTTGACTGTCCTGATCAGGAATCAGGAATCAAGATAAGTAATATAATCTATAAAGACATTGTAGGAACTTCAGCAACACCAATTGCCATAAAATTTGATTGTAGTTCAAAAAACCCTTGCAATGGAATAAGACTTGAAGATGTTCGCTTGACATACCAAAATGAAGAAGCTAAATCCTCTTGTGAATATGCAAAGGGGAAAACATTAGGTTTAGTTCAACCAGAAGGTTGTTTTGAATGA

Coding sequence (CDS)

ATGAACGAGCCTGGGGTAGGAAACATCACCGTTGCCAATGCAATATTTTACGGTACTCAAAATGGCCTGAGAATAAAGTCATGGGCCAGACCCAGCACTGGCTTTGTGTACGGAGTTCAATTTCTTGGAGCCACCATGCATAATGTCCAAAACCCAATTCTCATTGATCAACACTACTGCCCCAACAACTTTGACTGTCCTGATCAGGAATCAGGAATCAAGATAAGTAATATAATCTATAAAGACATTGTAGGAACTTCAGCAACACCAATTGCCATAAAATTTGATTGTAGTTCAAAAAACCCTTGCAATGGAATAAGACTTGAAGATGTTCGCTTGACATACCAAAATGAAGAAGCTAAATCCTCTTGTGAATATGCAAAGGGGAAAACATTAGGTTTAGTTCAACCAGAAGGTTGTTTTGAATGA

Protein sequence

MNEPGVGNITVANAIFYGTQNGLRIKSWARPSTGFVYGVQFLGATMHNVQNPILIDQHYCPNNFDCPDQESGIKISNIIYKDIVGTSATPIAIKFDCSSKNPCNGIRLEDVRLTYQNEEAKSSCEYAKGKTLGLVQPEGCFE*
Homology
[Close]
BLAST of Cucsa.356360 vs. Swiss-Prot
Match: PGLR_PRUPE (Polygalacturonase OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.6e-46
Identity = 86/138 (62.32%), Postives = 106/138 (76.81%), Query Frame = 1 

Query: 3   EPGVGNITVANAIFYGTQNGLRIKSWARPSTGFVYGVQFLGATMHNVQNPILIDQHYCPN 62
           E GV N+TV    F GTQNGLRIKSW RPSTGF   + F  ATM NV+NPI+IDQHYCP+
Sbjct: 255 EAGVQNVTVKTVTFSGTQNGLRIKSWGRPSTGFARNILFQHATMVNVENPIVIDQHYCPD 314

Query: 63  NFDCPDQESGIKISNIIYKDIVGTSATPIAIKFDCSSKNPCNGIRLEDVRLTYQNEEAKS 122
           N  CP Q SG++IS++ Y+DI GTSAT +A+KFDCS K+PC  I+LEDV+LTY+N+ A+S
Sbjct: 315 NKGCPGQVSGVQISDVTYEDIHGTSATEVAVKFDCSPKHPCREIKLEDVKLTYKNQAAES 374

Query: 123 SCEYAKGKTLGLVQPEGC 141
           SC +A G T G+VQP  C
Sbjct: 375 SCSHADGTTEGVVQPTSC 392

[Close]
BLAST of Cucsa.356360 vs. Swiss-Prot
Match: PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-30
Identity = 64/140 (45.71%), Postives = 88/140 (62.86%), Query Frame = 1 

Query: 3   EPGVGNITVANAIFYGTQNGLRIKSWARPSTGFVYGVQFLGATMHNVQNPILIDQHYCPN 62
           E GV N+TV+N  F GT NG+RIK+W + S  F   + F    M  V+NPI+IDQHYC +
Sbjct: 261 EQGVDNVTVSNVDFMGTNNGVRIKTWGKDSNSFARNIVFQHINMKMVKNPIIIDQHYCLH 320

Query: 63  NFDCPDQESGIKISNIIYKDIVGTSATPIAIKFDCSSKNPCNGIRLEDVRLTYQNEEAKS 122
              CP QESG+K+SN+ Y+DI GTS T +A+  DCS + PC GI ++DV L   +  A++
Sbjct: 321 K-PCPKQESGVKVSNVRYEDIHGTSNTEVAVLLDCSKEKPCTGIVMDDVNLVSVHRPAQA 380

Query: 123 SCEYAKGKTLGLVQPEGCFE 143
           SC+ A G    +V    C +
Sbjct: 381 SCDNANGSANDVVPFTPCLK 399

[Close]
BLAST of Cucsa.356360 vs. Swiss-Prot
Match: QRT2_ARATH (Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2)

HSP 1 Score: 116.3 bits (290), Expect = 2.7e-25
Identity = 59/138 (42.75%), Postives = 85/138 (61.59%), Query Frame = 1 

Query: 2   NEPGVGNITVANAIFYGTQNGLRIKSWARPSTGFVYGVQFLGATMHNVQNPILIDQHYCP 61
           +E  V N+ V  A   GT NG+RIK+W +   G    + F    M NV NPI+I+Q YC 
Sbjct: 300 SEAYVSNVVVNKATLIGTTNGVRIKTW-QGGHGMAKNIIFQDIIMKNVTNPIIINQDYCD 359

Query: 62  NNFDCPDQESGIKISNIIYKDIVGTSATPIAIKFDCSSKNPCNGIRLEDVRLTYQNEE-- 121
               CP+Q+S +++SN++YK+I GTS+ PIA+KF CS   PC GI +++V+L  Q ++  
Sbjct: 360 RVEACPEQKSAVQVSNVLYKNIQGTSSRPIAVKFVCSKNIPCRGISMQNVKLVDQTQQDV 419

Query: 122 AKSSCEYAKGKTLGLVQP 138
           +K+SC   K  T G V P
Sbjct: 420 SKASCSNVKLDTRGNVSP 436

[Close]
BLAST of Cucsa.356360 vs. Swiss-Prot
Match: PGLR_ACTDE (Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-24
Identity = 56/137 (40.88%), Postives = 84/137 (61.31%), Query Frame = 1 

Query: 2   NEPGVGNITVANAIFYGTQNGLRIKSWARPSTGFVYGVQFLGATMHNVQNPILIDQHYCP 61
           +E  V ++ V  A   GT NG+RIK+W +  +G    ++F    MHNV+NPI+IDQ+YC 
Sbjct: 318 SEAHVSDVVVNGAKLCGTTNGVRIKTW-QGGSGSASNIKFQNVEMHNVENPIIIDQNYCD 377

Query: 62  NNFDCPDQESGIKISNIIYKDIVGTSATPIAIKFDCSSKNPCNGIRLEDVRLTYQ-NEEA 121
            +  C +Q S +++ N++Y++I GT A+ +AI FDCS + PC GI LEDV L  +    A
Sbjct: 378 QDKPCQEQSSAVQVKNVVYQNIKGTCASNVAITFDCSKRFPCQGIVLEDVDLEIEGGAAA 437

Query: 122 KSSCEYAKGKTLGLVQP 138
           K+ C   +    G+V P
Sbjct: 438 KALCNNVELSETGVVSP 453

[Close]
BLAST of Cucsa.356360 vs. Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.3e-24
Identity = 61/140 (43.57%), Postives = 80/140 (57.14%), Query Frame = 1 

Query: 2   NEPGVGNITVANAIFYGTQNGLRIKSWARPSTGFVYGVQFLGATMHNVQNPILIDQHYCP 61
           NE  V  I ++N     T NG RIK+W     G V  + F   TM+NV +PILIDQ YCP
Sbjct: 256 NEEPVEGIKISNCTITNTSNGARIKTWPGEHGGAVSEIHFEDITMNNVSSPILIDQQYCP 315

Query: 62  NNFDCPDQESGIKISNIIYKDIVGTSATPIAIKFDCSSKNPCNGIRLEDVRLTYQN-EEA 121
            N    ++ES +K+SNI +K+I GTSA P AIKF CS  +PC  + L D+ + +   E A
Sbjct: 316 WNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIQHNGAEPA 375

Query: 122 KSSCEYAKGKTLGLVQPEGC 141
            S C   K  T+G + P  C
Sbjct: 376 TSQCLNVKPITIGKLNPIPC 395

[Close]
BLAST of Cucsa.356360 vs. TrEMBL
Match: A0A067KUR4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03487 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 7.7e-51
Identity = 96/140 (68.57%), Postives = 114/140 (81.43%), Query Frame = 1 

Query: 1   MNEPGVGNITVANAIFYGTQNGLRIKSWARPSTGFVYGVQFLGATMHNVQNPILIDQHYC 60
           M E GV N+TV + IF  TQNG RIKSWARPS GFV GVQF+GA M NVQNPI+IDQHYC
Sbjct: 252 MEEEGVQNVTVKSTIFADTQNGFRIKSWARPSNGFVEGVQFIGAIMRNVQNPIVIDQHYC 311

Query: 61  PNNFDCPDQESGIKISNIIYKDIVGTSATPIAIKFDCSSKNPCNGIRLEDVRLTYQNEEA 120
           P+N +CP+Q SGIK+S++IY+DI GTSATP+AIKFDCSSK PCNGI+L +V LT+ N+ A
Sbjct: 312 PHNLNCPNQVSGIKVSDVIYEDIRGTSATPVAIKFDCSSKFPCNGIKLHNVNLTHSNQVA 371

Query: 121 KSSCEYAKGKTLGLVQPEGC 141
           +S C    GKT+GLVQP GC
Sbjct: 372 QSFCANVVGKTIGLVQPNGC 391

[Close]
BLAST of Cucsa.356360 vs. TrEMBL
Match: A0A067KU09_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10497 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.1e-49
Identity = 96/140 (68.57%), Postives = 111/140 (79.29%), Query Frame = 1 

Query: 1   MNEPGVGNITVANAIFYGTQNGLRIKSWARPSTGFVYGVQFLGATMHNVQNPILIDQHYC 60
           + E GV N+TV + IF  TQNG RIKSWARPS GFV GVQF+GA M NVQNPI+IDQHYC
Sbjct: 253 LEEEGVRNVTVNSTIFADTQNGFRIKSWARPSNGFVQGVQFVGAIMRNVQNPIVIDQHYC 312

Query: 61  PNNFDCPDQESGIKISNIIYKDIVGTSATPIAIKFDCSSKNPCNGIRLEDVRLTYQNEEA 120
           P+N DCP Q SGIKIS+++Y+ I GTSA  +AIKFDCSSK PCNGIRL DV LTY N+ A
Sbjct: 313 PHNIDCPTQVSGIKISDVLYQGIRGTSAKSVAIKFDCSSKFPCNGIRLHDVNLTYSNQVA 372

Query: 121 KSSCEYAKGKTLGLVQPEGC 141
           +S C    GKT+GLVQP+GC
Sbjct: 373 QSFCANVIGKTVGLVQPDGC 392

[Close]
BLAST of Cucsa.356360 vs. TrEMBL
Match: A0A067L770_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03485 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 9.4e-49
Identity = 94/140 (67.14%), Postives = 110/140 (78.57%), Query Frame = 1 

Query: 1   MNEPGVGNITVANAIFYGTQNGLRIKSWARPSTGFVYGVQFLGATMHNVQNPILIDQHYC 60
           M E GV N+TV +  F  TQNG RIKSWARPS GFV  V+F+GA MHNVQNPI+IDQHYC
Sbjct: 249 MEEEGVQNVTVKSTTFADTQNGFRIKSWARPSNGFVQRVRFIGAIMHNVQNPIVIDQHYC 308

Query: 61  PNNFDCPDQESGIKISNIIYKDIVGTSATPIAIKFDCSSKNPCNGIRLEDVRLTYQNEEA 120
           P+N +CP Q SGIKI ++IY+DI GTSATP+AIK DCSSK PCNGIRL +V LT+ N+ A
Sbjct: 309 PHNINCPTQVSGIKIRDVIYQDIRGTSATPVAIKLDCSSKFPCNGIRLHNVNLTHSNQVA 368

Query: 121 KSSCEYAKGKTLGLVQPEGC 141
           +S C    GKT+GLVQP GC
Sbjct: 369 QSFCANVVGKTVGLVQPNGC 388

[Close]
BLAST of Cucsa.356360 vs. TrEMBL
Match: W9S8V2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008395 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.6e-48
Identity = 90/140 (64.29%), Postives = 111/140 (79.29%), Query Frame = 1 

Query: 1   MNEPGVGNITVANAIFYGTQNGLRIKSWARPSTGFVYGVQFLGATMHNVQNPILIDQHYC 60
           + E GV N+TV    F  TQNGLRIKSWARPS+GFV GVQFL   M NVQNPI+IDQ+YC
Sbjct: 260 LEEDGVKNVTVKQVAFTNTQNGLRIKSWARPSSGFVQGVQFLNVVMQNVQNPIIIDQNYC 319

Query: 61  PNNFDCPDQESGIKISNIIYKDIVGTSATPIAIKFDCSSKNPCNGIRLEDVRLTYQNEEA 120
           P+N +CP + SG+KIS+++Y+ I GTSAT +A+KFDCS +NPC GIRLEDV LTY+N+EA
Sbjct: 320 PHNINCPGRVSGVKISDVVYRGIKGTSATVVAMKFDCSPRNPCKGIRLEDVNLTYKNQEA 379

Query: 121 KSSCEYAKGKTLGLVQPEGC 141
           KSSC  A GK++G V P+ C
Sbjct: 380 KSSCSNANGKSVGKVLPDSC 399

[Close]
BLAST of Cucsa.356360 vs. TrEMBL
Match: M5W6W7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018308mg PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 6.1e-48
Identity = 92/140 (65.71%), Postives = 111/140 (79.29%), Query Frame = 1 

Query: 1   MNEPGVGNITVANAIFYGTQNGLRIKSWARPSTGFVYGVQFLGATMHNVQNPILIDQHYC 60
           + E GV N+TV NA+F GTQNGLRIKSWARPS GFV GVQFL   M NVQNPI+IDQ+YC
Sbjct: 236 LEEEGVQNVTVKNALFKGTQNGLRIKSWARPSNGFVQGVQFLDVVMFNVQNPIVIDQNYC 295

Query: 61  PNNFDCPDQESGIKISNIIYKDIVGTSATPIAIKFDCSSKNPCNGIRLEDVRLTYQNEEA 120
           P+N +CP Q SG+K+S+++Y++I GTSAT IAIKFDCSS NPC+GIRLE+V LT +N+E 
Sbjct: 296 PHNINCPAQVSGVKVSDVVYRNIQGTSATAIAIKFDCSSTNPCSGIRLENVSLTCRNQEV 355

Query: 121 KSSCEYAKGKTLGLVQPEGC 141
            S C  A GK +G VQP  C
Sbjct: 356 LSLCANANGKIVGTVQPNNC 375

[Close]
BLAST of Cucsa.356360 vs. TAIR10
Match: AT1G65570.1 (AT1G65570.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 176.4 bits (446), Expect = 1.3e-44
Identity = 86/140 (61.43%), Postives = 100/140 (71.43%), Query Frame = 1 

Query: 1   MNEPGVGNITVANAIFYGTQNGLRIKSWARPSTGFVYGVQFLGATMHNVQNPILIDQHYC 60
           + E GV N+TV NA+F  T NGLRIKSW R S GFV  V+FLGA M NV  PILIDQ+YC
Sbjct: 257 IEEQGVENVTVKNAVFVRTDNGLRIKSWPRHSNGFVERVRFLGAIMVNVSYPILIDQNYC 316

Query: 61  PNNFDCPDQESGIKISNIIYKDIVGTSATPIAIKFDCSSKNPCNGIRLEDVRLTYQNEEA 120
           P +  CP QESGIKI+++IY  I+GTSAT IAIK DCS K PC GIR++ + LT   E A
Sbjct: 317 PGDSSCPSQESGIKINDVIYSGIMGTSATEIAIKMDCSEKVPCTGIRMQAINLTSYGEAA 376

Query: 121 KSSCEYAKGKTLGLVQPEGC 141
           K+SC    GK LGLV P GC
Sbjct: 377 KTSCTNVSGKQLGLVTPSGC 396

[Close]
BLAST of Cucsa.356360 vs. TAIR10
Match: AT3G59850.1 (AT3G59850.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 174.9 bits (442), Expect = 3.6e-44
Identity = 79/138 (57.25%), Postives = 102/138 (73.91%), Query Frame = 1 

Query: 3   EPGVGNITVANAIFYGTQNGLRIKSWARPSTGFVYGVQFLGATMHNVQNPILIDQHYCPN 62
           E GV NITV  A F GT+NG+RIKSWARPS GF   ++F    M+NVQNPI+IDQ+YCP 
Sbjct: 250 EVGVQNITVKTATFTGTENGVRIKSWARPSNGFAKNIRFQHCVMNNVQNPIVIDQNYCPG 309

Query: 63  NFDCPDQESGIKISNIIYKDIVGTSATPIAIKFDCSSKNPCNGIRLEDVRLTYQNEEAKS 122
           N +CP+Q SGIKIS++++ DI GTSAT + +K DCSSK PC GIR++DV+LTY+N+ A +
Sbjct: 310 NENCPNQVSGIKISDVMFFDIHGTSATEVGVKLDCSSKKPCTGIRIQDVKLTYRNKPATT 369

Query: 123 SCEYAKGKTLGLVQPEGC 141
            C +A G   G  +P  C
Sbjct: 370 DCSHAGGSEAGFQRPNSC 387

[Close]
BLAST of Cucsa.356360 vs. TAIR10
Match: AT2G43870.1 (AT2G43870.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 170.6 bits (431), Expect = 6.9e-43
Identity = 80/135 (59.26%), Postives = 101/135 (74.81%), Query Frame = 1 

Query: 3   EPGVGNITVANAIFYGTQNGLRIKSWARPSTGFVYGVQFLGATMHNVQNPILIDQHYCPN 62
           E GV N+TV    F GT NG+RIKSWARPS+GF   ++F    M+NV+NPI+IDQ+YCP+
Sbjct: 248 ESGVQNVTVKTVTFTGTDNGVRIKSWARPSSGFAKNIRFQHCVMNNVENPIIIDQNYCPD 307

Query: 63  NFDCPDQESGIKISNIIYKDIVGTSATPIAIKFDCSSKNPCNGIRLEDVRLTYQNEEAKS 122
           + DCP Q SGIKIS++++ DI GTSAT + +K DCSSK PC GIRLEDV+LTYQN+ A S
Sbjct: 308 H-DCPRQVSGIKISDVLFVDIHGTSATEVGVKLDCSSKKPCTGIRLEDVKLTYQNKPAAS 367

Query: 123 SCEYAKGKTLGLVQP 138
           +C +A G   G  QP
Sbjct: 368 ACTHAGGIEAGFFQP 381

[Close]
BLAST of Cucsa.356360 vs. TAIR10
Match: AT1G05650.1 (AT1G05650.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-42
Identity = 80/141 (56.74%), Postives = 103/141 (73.05%), Query Frame = 1 

Query: 1   MNEPGVGNITVANAIFYGTQNGLRIKSWARPSTGFVYGVQFLGATMHNVQNPILIDQHYC 60
           +NE GV N+TV++++F G+QNG+RIKSWARPSTGFV  V F    M NVQNPI+IDQ+YC
Sbjct: 251 LNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQNLIMRNVQNPIIIDQNYC 310

Query: 61  PNNFDCPDQESGIKISNIIYKDIVGTSATPIAIKFDCSSKNPCNGIRLEDVRLTY-QNEE 120
           P+N  CP + SG+KI+ + YK+I GTSAT  A+K  CS  NPC GI L+D++LTY +   
Sbjct: 311 PSNQGCPTEHSGVKITQVTYKNIQGTSATQEAMKLVCSKSNPCTGITLQDIKLTYNKGTP 370

Query: 121 AKSSCEYAKGKTLGLVQPEGC 141
           A S C  A GK LG++QP  C
Sbjct: 371 ATSLCFNAVGKNLGVIQPTSC 391

[Close]
BLAST of Cucsa.356360 vs. TAIR10
Match: AT2G43890.1 (AT2G43890.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 169.5 bits (428), Expect = 1.5e-42
Identity = 76/139 (54.68%), Postives = 99/139 (71.22%), Query Frame = 1 

Query: 2   NEPGVGNITVANAIFYGTQNGLRIKSWARPSTGFVYGVQFLGATMHNVQNPILIDQHYCP 61
           NE GV NIT+ N++F G+ NG+RIK+WAR STGFV  V F    M NVQNPI++DQ+YCP
Sbjct: 253 NEAGVENITLINSVFSGSDNGVRIKTWARQSTGFVRNVLFQNLIMKNVQNPIIVDQNYCP 312

Query: 62  NNFDCPDQESGIKISNIIYKDIVGTSATPIAIKFDCSSKNPCNGIRLEDVRLTYQNEEAK 121
           +N  CP Q SG+KIS ++Y++I GTS T  A+ FDCS  NPC  IRL D++LT+    A 
Sbjct: 313 SNQGCPKQGSGVKISQVVYRNIQGTSRTQQALTFDCSRSNPCQAIRLHDIKLTFNGRSAT 372

Query: 122 SSCEYAKGKTLGLVQPEGC 141
           S+C+  KG   G+V P+GC
Sbjct: 373 STCKNIKGVKAGVVMPQGC 391

[Close]
BLAST of Cucsa.356360 vs. NCBI nr
Match: gi|659085882|ref|XP_008443656.1| (PREDICTED: polygalacturonase [Cucumis melo])

HSP 1 Score: 288.9 bits (738), Expect = 4.9e-75
Identity = 136/142 (95.77%), Postives = 139/142 (97.89%), Query Frame = 1 

Query: 1   MNEPGVGNITVANAIFYGTQNGLRIKSWARPSTGFVYGVQFLGATMHNVQNPILIDQHYC 60
           MNEPGVGN+TV+ AIFYGTQNGLRIKSWARPSTGFVYGVQFLGATMHNVQNPILIDQHYC
Sbjct: 263 MNEPGVGNVTVSKAIFYGTQNGLRIKSWARPSTGFVYGVQFLGATMHNVQNPILIDQHYC 322

Query: 61  PNNFDCPDQESGIKISNIIYKDIVGTSATPIAIKFDCSSKNPCNGIRLEDVRLTYQNEEA 120
           PNN +CP QESGIKISNIIYKDIVGTSATPIAIKFDCSSKNPCNGIRLEDVRLTYQNEEA
Sbjct: 323 PNNINCPGQESGIKISNIIYKDIVGTSATPIAIKFDCSSKNPCNGIRLEDVRLTYQNEEA 382

Query: 121 KSSCEYAKGKTLGLVQPEGCFE 143
           KSSCEYAKGKTLGLVQPEGCFE
Sbjct: 383 KSSCEYAKGKTLGLVQPEGCFE 404

[Close]
BLAST of Cucsa.356360 vs. NCBI nr
Match: gi|1009158464|ref|XP_015897304.1| (PREDICTED: polygalacturonase-like [Ziziphus jujuba])

HSP 1 Score: 208.4 bits (529), Expect = 8.4e-51
Identity = 96/140 (68.57%), Postives = 115/140 (82.14%), Query Frame = 1 

Query: 1   MNEPGVGNITVANAIFYGTQNGLRIKSWARPSTGFVYGVQFLGATMHNVQNPILIDQHYC 60
           + E GV N+TV  AIF GTQNGLRIKSWARPS GFV GVQF+ A M NVQNPI+IDQ+YC
Sbjct: 251 LEEDGVQNVTVTKAIFIGTQNGLRIKSWARPSKGFVQGVQFIDAIMQNVQNPIIIDQNYC 310

Query: 61  PNNFDCPDQESGIKISNIIYKDIVGTSATPIAIKFDCSSKNPCNGIRLEDVRLTYQNEEA 120
           P+N +CP Q SG+KIS++IYK+I GTSAT +AIK DCS+ NPC+GIRLEDV+LTY+ +EA
Sbjct: 311 PHNINCPGQTSGLKISDVIYKNIRGTSATSVAIKLDCSATNPCSGIRLEDVKLTYKKQEA 370

Query: 121 KSSCEYAKGKTLGLVQPEGC 141
           +SSC  AKGK  G+VQP  C
Sbjct: 371 QSSCVNAKGKAFGIVQPNNC 390

[Close]
BLAST of Cucsa.356360 vs. NCBI nr
Match: gi|802584438|ref|XP_012070142.1| (PREDICTED: polygalacturonase-like [Jatropha curcas])

HSP 1 Score: 208.0 bits (528), Expect = 1.1e-50
Identity = 96/140 (68.57%), Postives = 114/140 (81.43%), Query Frame = 1 

Query: 1   MNEPGVGNITVANAIFYGTQNGLRIKSWARPSTGFVYGVQFLGATMHNVQNPILIDQHYC 60
           M E GV N+TV + IF  TQNG RIKSWARPS GFV GVQF+GA M NVQNPI+IDQHYC
Sbjct: 252 MEEEGVQNVTVKSTIFADTQNGFRIKSWARPSNGFVEGVQFIGAIMRNVQNPIVIDQHYC 311

Query: 61  PNNFDCPDQESGIKISNIIYKDIVGTSATPIAIKFDCSSKNPCNGIRLEDVRLTYQNEEA 120
           P+N +CP+Q SGIK+S++IY+DI GTSATP+AIKFDCSSK PCNGI+L +V LT+ N+ A
Sbjct: 312 PHNLNCPNQVSGIKVSDVIYEDIRGTSATPVAIKFDCSSKFPCNGIKLHNVNLTHSNQVA 371

Query: 121 KSSCEYAKGKTLGLVQPEGC 141
           +S C    GKT+GLVQP GC
Sbjct: 372 QSFCANVVGKTIGLVQPNGC 391

[Close]
BLAST of Cucsa.356360 vs. NCBI nr
Match: gi|802614667|ref|XP_012074772.1| (PREDICTED: polygalacturonase-like [Jatropha curcas])

HSP 1 Score: 204.1 bits (518), Expect = 1.6e-49
Identity = 96/140 (68.57%), Postives = 111/140 (79.29%), Query Frame = 1 

Query: 1   MNEPGVGNITVANAIFYGTQNGLRIKSWARPSTGFVYGVQFLGATMHNVQNPILIDQHYC 60
           + E GV N+TV + IF  TQNG RIKSWARPS GFV GVQF+GA M NVQNPI+IDQHYC
Sbjct: 253 LEEEGVRNVTVNSTIFADTQNGFRIKSWARPSNGFVQGVQFVGAIMRNVQNPIVIDQHYC 312

Query: 61  PNNFDCPDQESGIKISNIIYKDIVGTSATPIAIKFDCSSKNPCNGIRLEDVRLTYQNEEA 120
           P+N DCP Q SGIKIS+++Y+ I GTSA  +AIKFDCSSK PCNGIRL DV LTY N+ A
Sbjct: 313 PHNIDCPTQVSGIKISDVLYQGIRGTSAKSVAIKFDCSSKFPCNGIRLHDVNLTYSNQVA 372

Query: 121 KSSCEYAKGKTLGLVQPEGC 141
           +S C    GKT+GLVQP+GC
Sbjct: 373 QSFCANVIGKTVGLVQPDGC 392

[Close]
BLAST of Cucsa.356360 vs. NCBI nr
Match: gi|802583415|ref|XP_012070102.1| (PREDICTED: polygalacturonase-like [Jatropha curcas])

HSP 1 Score: 201.1 bits (510), Expect = 1.3e-48
Identity = 94/140 (67.14%), Postives = 110/140 (78.57%), Query Frame = 1 

Query: 1   MNEPGVGNITVANAIFYGTQNGLRIKSWARPSTGFVYGVQFLGATMHNVQNPILIDQHYC 60
           M E GV N+TV +  F  TQNG RIKSWARPS GFV  V+F+GA MHNVQNPI+IDQHYC
Sbjct: 249 MEEEGVQNVTVKSTTFADTQNGFRIKSWARPSNGFVQRVRFIGAIMHNVQNPIVIDQHYC 308

Query: 61  PNNFDCPDQESGIKISNIIYKDIVGTSATPIAIKFDCSSKNPCNGIRLEDVRLTYQNEEA 120
           P+N +CP Q SGIKI ++IY+DI GTSATP+AIK DCSSK PCNGIRL +V LT+ N+ A
Sbjct: 309 PHNINCPTQVSGIKIRDVIYQDIRGTSATPVAIKLDCSSKFPCNGIRLHNVNLTHSNQVA 368

Query: 121 KSSCEYAKGKTLGLVQPEGC 141
           +S C    GKT+GLVQP GC
Sbjct: 369 QSFCANVVGKTVGLVQPNGC 388

The following BLAST results are available for this feature:
BLAST of Cucsa.356360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR_PRUPE1.6e-4662.32Polygalacturonase OS=Prunus persica PE=2 SV=1[more]
PGLR6_ARATH1.3e-3045.71Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 S... [more]
QRT2_ARATH2.7e-2542.75Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2[more]
PGLR_ACTDE1.4e-2440.88Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1[more]
PGLR_GOSBA2.3e-2443.57Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1[more]
BLAST of Cucsa.356360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A067KUR4_JATCU7.7e-5168.57Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03487 PE=3 SV=1[more]
A0A067KU09_JATCU1.1e-4968.57Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10497 PE=3 SV=1[more]
A0A067L770_JATCU9.4e-4967.14Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03485 PE=3 SV=1[more]
W9S8V2_9ROSA3.6e-4864.29Uncharacterized protein OS=Morus notabilis GN=L484_008395 PE=3 SV=1[more]
M5W6W7_PRUPE6.1e-4865.71Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018308mg PE=3 SV=1[more]
BLAST of Cucsa.356360 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G65570.11.3e-4461.43 Pectin lyase-like superfamily protein[more]
AT3G59850.13.6e-4457.25 Pectin lyase-like superfamily protein[more]
AT2G43870.16.9e-4359.26 Pectin lyase-like superfamily protein[more]
AT1G05650.11.2e-4256.74 Pectin lyase-like superfamily protein[more]
AT2G43890.11.5e-4254.68 Pectin lyase-like superfamily protein[more]
BLAST of Cucsa.356360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659085882|ref|XP_008443656.1|4.9e-7595.77PREDICTED: polygalacturonase [Cucumis melo][more]
gi|1009158464|ref|XP_015897304.1|8.4e-5168.57PREDICTED: polygalacturonase-like [Ziziphus jujuba][more]
gi|802584438|ref|XP_012070142.1|1.1e-5068.57PREDICTED: polygalacturonase-like [Jatropha curcas][more]
gi|802614667|ref|XP_012074772.1|1.6e-4968.57PREDICTED: polygalacturonase-like [Jatropha curcas][more]
gi|802583415|ref|XP_012070102.1|1.3e-4867.14PREDICTED: polygalacturonase-like [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000743Glyco_hydro_28
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.356360.1Cucsa.356360.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 5..128
score: 2.3
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 4..141
score: 3.14
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 3..140
score: 1.2
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 1..142
score: 3.6
NoneNo IPR availablePANTHERPTHR31375:SF27F5I14.10coord: 1..142
score: 3.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.356360Cucurbita maxima (Rimu)cgycmaB0969
Cucsa.356360Cucurbita maxima (Rimu)cgycmaB0970
Cucsa.356360Cucurbita moschata (Rifu)cgycmoB0972
Cucsa.356360Cucurbita moschata (Rifu)cgycmoB0973
Cucsa.356360Wild cucumber (PI 183967)cgycpiB528
Cucsa.356360Cucumber (Chinese Long) v2cgycuB500
Cucsa.356360Melon (DHL92) v3.5.1cgymeB574
Cucsa.356360Watermelon (Charleston Gray)cgywcgB605
Cucsa.356360Watermelon (Charleston Gray)cgywcgB607
Cucsa.356360Watermelon (97103) v1cgywmB638
Cucsa.356360Cucurbita pepo (Zucchini)cgycpeB0927
Cucsa.356360Cucurbita pepo (Zucchini)cgycpeB0928
Cucsa.356360Bottle gourd (USVL1VR-Ls)cgylsiB573
Cucsa.356360Melon (DHL92) v3.6.1cgymedB575
Cucsa.356360Silver-seed gourdcarcgyB0613
Cucsa.356360Silver-seed gourdcarcgyB1085
Cucsa.356360Cucumber (Chinese Long) v3cgycucB542
Cucsa.356360Watermelon (97103) v2cgywmbB608
Cucsa.356360Wax gourdcgywgoB711