Cucsa.356250 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.356250
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description60S ribosomal protein L21
Locationscaffold03577 : 980993 .. 981525 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAACATACAAAATTGGCAATTATGTCCATATCAAGGTGAACGGCACCGTCCAGAAGGGTGTGCCTCATAAATTTTATCACGGTCGCACATGTCGCGTATGAAATGTTACAAAGTGTGCCATTGGCATCAAGATCGACAAGTAGGTTTGGAATTCTTTTTtAAGATATGTTCTAGTTTTCAGAATGTATGTGAATATAATTATTTAAAGTAATAGATTGTGTTTGATTTTCTATAGACGGTTGAATAGTTTTTGGATTTTATTTTTCTTATTAAACTTTGTTAGTTTGATGGGTTTTGAAATCTGATGAGAGAAAGTTCAATTATGATTTGGACTCTTTTTCTTATTAAACTTGTGATGTTCAGAATGGATTTTGCAAGTCAGGAACATAATTATTAAGAAGAAAATTCATGTCGGAGTCGAGCACGTGTAACTTTCTCGATGCACCGAGGAATTTTGCTTGAGGAAGGTGAAGAATGACAAGTTGAAGGTCGAAGCCAAGACCAAAGGCGCAATCCTCTGCACCAAGAG

mRNA sequence

ATGAGAACATACAAAATTGGCAATTATGTCCATATCAAGGTGAACGGCACCGTCCAGAAGGGTGTGCCTCATAAATTTTATCACGGTCGCACATGTCGCGAATTTTGCTTGAGGAAGGTGAAGAATGACAAGTTGAAGGTCGAAGCCAAGACCAAAGGCGCAATCCTCTGCACCAAGAG

Coding sequence (CDS)

ATGAGAACATACAAAATTGGCAATTATGTCCATATCAAGGTGAACGGCACCGTCCAGAAGGGTGTGCCTCATAAATTTTATCACGGTCGCACATGTCGCGAATTTTGCTTGAGGAAGGTGAAGAATGACAAGTTGAAGGTCGAAGCCAAGACCAAAGGCGCAATCCTCTGCACCAAGAG

Protein sequence

MRTYKIGNYVHIKVNGTVQKGVPHKFYHGRTCREFCLRKVKNDKLKVEAKTKGAILCTKX
Homology
[Close]
BLAST of Cucsa.356250 vs. Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 3.0e-10
Identity = 37/99 (37.37%), Postives = 46/99 (46.46%), Query Frame = 1 

Query: 1   MRTYKIGNYVHIKVNGTVQKGVPHKFYHGRTCR--------------------------- 60
           +RT+K+G+YV +KVNG + KG+PHKFYHGRT R                           
Sbjct: 31  LRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIH 90

[Close]
BLAST of Cucsa.356250 vs. Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.2e-10
Identity = 36/99 (36.36%), Postives = 47/99 (47.47%), Query Frame = 1 

Query: 1   MRTYKIGNYVHIKVNGTVQKGVPHKFYHGRTCR--------------------------- 60
           +RT+K+G+YV +KVNG + KG+PHKFYHGRT R                           
Sbjct: 31  LRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIH 90

[Close]
BLAST of Cucsa.356250 vs. Swiss-Prot
Match: RL21A_SCHPO (60S ribosomal protein L21-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl2101 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.1e-07
Identity = 21/31 (67.74%), Postives = 28/31 (90.32%), Query Frame = 1 

Query: 1  MRTYKIGNYVHIKVNGTVQKGVPHKFYHGRT 32
          ++TYK+G+ V IKVNG VQKG+PHK+YHG+T
Sbjct: 31 LKTYKVGDIVDIKVNGAVQKGMPHKYYHGKT 61

[Close]
BLAST of Cucsa.356250 vs. Swiss-Prot
Match: RL21B_SCHPO (60S ribosomal protein L21-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl2102 PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 4.1e-07
Identity = 21/31 (67.74%), Postives = 28/31 (90.32%), Query Frame = 1 

Query: 1  MRTYKIGNYVHIKVNGTVQKGVPHKFYHGRT 32
          ++TYK+G+ V IKVNG VQKG+PHK+YHG+T
Sbjct: 31 LKTYKVGDIVDIKVNGAVQKGMPHKYYHGKT 61

[Close]
BLAST of Cucsa.356250 vs. Swiss-Prot
Match: RL21_DICDI (60S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-06
Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 1 

Query: 1  MRTYKIGNYVHIKVNGTVQKGVPHKFYHGRTCR 34
          +RT+++G+YV IK  G V KG+PHKFYHGRT R
Sbjct: 31 LRTFRLGDYVDIKATGNVHKGMPHKFYHGRTGR 63

[Close]
BLAST of Cucsa.356250 vs. TrEMBL
Match: A0A0A0LEZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G797610 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-12
Identity = 44/99 (44.44%), Postives = 50/99 (50.51%), Query Frame = 1 

Query: 1   MRTYKIGNYVHIKVNGTVQKGVPHKFYHGRT----------------------------- 60
           +RTYKIG+YV IKVNG V KG+PHKFYHGRT                             
Sbjct: 31  LRTYKIGDYVDIKVNGAVHKGMPHKFYHGRTGQVWNVTKRAIGVEINKQVGNRIIKKRIH 90

[Close]
BLAST of Cucsa.356250 vs. TrEMBL
Match: A0A061EXP3_THECC (60S ribosomal protein L21 isoform 1 OS=Theobroma cacao GN=TCM_024987 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.9e-11
Identity = 44/99 (44.44%), Postives = 50/99 (50.51%), Query Frame = 1 

Query: 1   MRTYKIGNYVHIKVNGTVQKGVPHKFYHGRTCR--------------------------- 60
           +RTYKIG+YV IKVNG V KG+PHKFYHGRT R                           
Sbjct: 31  LRTYKIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIH 90

[Close]
BLAST of Cucsa.356250 vs. TrEMBL
Match: A0A0D2NQZ1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G231800 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-11
Identity = 43/99 (43.43%), Postives = 50/99 (50.51%), Query Frame = 1 

Query: 1   MRTYKIGNYVHIKVNGTVQKGVPHKFYHGRTCR--------------------------- 60
           +RTYKIG+YV +KVNG V KG+PHKFYHGRT R                           
Sbjct: 31  LRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIH 90

[Close]
BLAST of Cucsa.356250 vs. TrEMBL
Match: A0A0B0MJE8_GOSAR (60S ribosomal L21-1-like protein OS=Gossypium arboreum GN=F383_17279 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.3e-11
Identity = 42/99 (42.42%), Postives = 50/99 (50.51%), Query Frame = 1 

Query: 1   MRTYKIGNYVHIKVNGTVQKGVPHKFYHGRTCR--------------------------- 60
           +RTYKIG+YV +KVNG V KG+PHKFYHGRT R                           
Sbjct: 31  LRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIH 90

[Close]
BLAST of Cucsa.356250 vs. TrEMBL
Match: A0A0U1WT33_GOSHI (60S ribosomal protein L21 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.3e-11
Identity = 42/99 (42.42%), Postives = 50/99 (50.51%), Query Frame = 1 

Query: 1   MRTYKIGNYVHIKVNGTVQKGVPHKFYHGRTCR--------------------------- 60
           +RTYKIG+YV +KVNG V KG+PHKFYHGRT R                           
Sbjct: 31  LRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIH 90

[Close]
BLAST of Cucsa.356250 vs. TAIR10
Match: AT1G09590.1 (AT1G09590.1 Translation protein SH3-like family protein)

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-11
Identity = 37/99 (37.37%), Postives = 46/99 (46.46%), Query Frame = 1 

Query: 1   MRTYKIGNYVHIKVNGTVQKGVPHKFYHGRTCR--------------------------- 60
           +RT+K+G+YV +KVNG + KG+PHKFYHGRT R                           
Sbjct: 31  LRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIH 90

[Close]
BLAST of Cucsa.356250 vs. TAIR10
Match: AT1G09690.1 (AT1G09690.1 Translation protein SH3-like family protein)

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-11
Identity = 37/99 (37.37%), Postives = 46/99 (46.46%), Query Frame = 1 

Query: 1   MRTYKIGNYVHIKVNGTVQKGVPHKFYHGRTCR--------------------------- 60
           +RT+K+G+YV +KVNG + KG+PHKFYHGRT R                           
Sbjct: 31  LRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIH 90

[Close]
BLAST of Cucsa.356250 vs. TAIR10
Match: AT1G57660.1 (AT1G57660.1 Translation protein SH3-like family protein)

HSP 1 Score: 64.3 bits (155), Expect = 2.9e-11
Identity = 36/99 (36.36%), Postives = 47/99 (47.47%), Query Frame = 1 

Query: 1   MRTYKIGNYVHIKVNGTVQKGVPHKFYHGRTCR--------------------------- 60
           +RT+K+G+YV +KVNG + KG+PHKFYHGRT R                           
Sbjct: 31  LRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIH 90

[Close]
BLAST of Cucsa.356250 vs. TAIR10
Match: AT1G57860.1 (AT1G57860.1 Translation protein SH3-like family protein)

HSP 1 Score: 64.3 bits (155), Expect = 2.9e-11
Identity = 36/99 (36.36%), Postives = 47/99 (47.47%), Query Frame = 1 

Query: 1   MRTYKIGNYVHIKVNGTVQKGVPHKFYHGRTCR--------------------------- 60
           +RT+K+G+YV +KVNG + KG+PHKFYHGRT R                           
Sbjct: 31  LRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIH 90

[Close]
BLAST of Cucsa.356250 vs. NCBI nr
Match: gi|659084684|ref|XP_008443016.1| (PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-12
Identity = 45/99 (45.45%), Postives = 51/99 (51.52%), Query Frame = 1 

Query: 1   MRTYKIGNYVHIKVNGTVQKGVPHKFYHGRTCR--------------------------- 60
           +RTYKIG+YV IKVNG V KG+PHKFYHGRT R                           
Sbjct: 31  LRTYKIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIH 90

[Close]
BLAST of Cucsa.356250 vs. NCBI nr
Match: gi|778684693|ref|XP_004140433.2| (PREDICTED: 60S ribosomal protein L21-1 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-12
Identity = 44/99 (44.44%), Postives = 50/99 (50.51%), Query Frame = 1 

Query: 1   MRTYKIGNYVHIKVNGTVQKGVPHKFYHGRT----------------------------- 60
           +RTYKIG+YV IKVNG V KG+PHKFYHGRT                             
Sbjct: 31  LRTYKIGDYVDIKVNGAVHKGMPHKFYHGRTGQVWNVTKRAIGVEINKQVGNRIIKKRIH 90

[Close]
BLAST of Cucsa.356250 vs. NCBI nr
Match: gi|645271704|ref|XP_008241042.1| (PREDICTED: 60S ribosomal protein L21-1-like [Prunus mume])

HSP 1 Score: 77.4 bits (189), Expect = 9.4e-12
Identity = 41/99 (41.41%), Postives = 51/99 (51.52%), Query Frame = 1 

Query: 1   MRTYKIGNYVHIKVNGTVQKGVPHKFYHGRTCR--------------------------- 60
           ++TY+IG+YV +KVNG V KG+PHKFYHGRT R                           
Sbjct: 31  LKTYRIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIH 90

[Close]
BLAST of Cucsa.356250 vs. NCBI nr
Match: gi|590637262|ref|XP_007029068.1| (60S ribosomal protein L21 isoform 1 [Theobroma cacao])

HSP 1 Score: 75.9 bits (185), Expect = 2.7e-11
Identity = 44/99 (44.44%), Postives = 50/99 (50.51%), Query Frame = 1 

Query: 1   MRTYKIGNYVHIKVNGTVQKGVPHKFYHGRTCR--------------------------- 60
           +RTYKIG+YV IKVNG V KG+PHKFYHGRT R                           
Sbjct: 31  LRTYKIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIH 90

[Close]
BLAST of Cucsa.356250 vs. NCBI nr
Match: gi|823136611|ref|XP_012468071.1| (PREDICTED: 60S ribosomal protein L21-1 [Gossypium raimondii])

HSP 1 Score: 75.5 bits (184), Expect = 3.6e-11
Identity = 43/99 (43.43%), Postives = 50/99 (50.51%), Query Frame = 1 

Query: 1   MRTYKIGNYVHIKVNGTVQKGVPHKFYHGRTCR--------------------------- 60
           +RTYKIG+YV +KVNG V KG+PHKFYHGRT R                           
Sbjct: 31  LRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIH 90

The following BLAST results are available for this feature:
BLAST of Cucsa.356250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL211_ARATH3.0e-1037.3760S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2[more]
RL212_ARATH5.2e-1036.3660S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1[more]
RL21A_SCHPO4.1e-0767.7460S ribosomal protein L21-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484... [more]
RL21B_SCHPO4.1e-0767.7460S ribosomal protein L21-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484... [more]
RL21_DICDI1.2e-0663.6460S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1[more]
BLAST of Cucsa.356250 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LEZ0_CUCSA2.3e-1244.44Uncharacterized protein OS=Cucumis sativus GN=Csa_3G797610 PE=4 SV=1[more]
A0A061EXP3_THECC1.9e-1144.4460S ribosomal protein L21 isoform 1 OS=Theobroma cacao GN=TCM_024987 PE=4 SV=1[more]
A0A0D2NQZ1_GOSRA2.5e-1143.43Uncharacterized protein OS=Gossypium raimondii GN=B456_002G231800 PE=4 SV=1[more]
A0A0B0MJE8_GOSAR3.3e-1142.4260S ribosomal L21-1-like protein OS=Gossypium arboreum GN=F383_17279 PE=4 SV=1[more]
A0A0U1WT33_GOSHI3.3e-1142.4260S ribosomal protein L21 OS=Gossypium hirsutum PE=2 SV=1[more]
BLAST of Cucsa.356250 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G09590.11.7e-1137.37 Translation protein SH3-like family protein[more]
AT1G09690.11.7e-1137.37 Translation protein SH3-like family protein[more]
AT1G57660.12.9e-1136.36 Translation protein SH3-like family protein[more]
AT1G57860.12.9e-1136.36 Translation protein SH3-like family protein[more]
BLAST of Cucsa.356250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659084684|ref|XP_008443016.1|1.5e-1245.45PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo][more]
gi|778684693|ref|XP_004140433.2|3.2e-1244.44PREDICTED: 60S ribosomal protein L21-1 [Cucumis sativus][more]
gi|645271704|ref|XP_008241042.1|9.4e-1241.41PREDICTED: 60S ribosomal protein L21-1-like [Prunus mume][more]
gi|590637262|ref|XP_007029068.1|2.7e-1144.4460S ribosomal protein L21 isoform 1 [Theobroma cacao][more]
gi|823136611|ref|XP_012468071.1|3.6e-1143.43PREDICTED: 60S ribosomal protein L21-1 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001147Ribosomal_L21e
IPR008991Translation_prot_SH3-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.356250.1Cucsa.356250.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001147Ribosomal protein L21eGENE3DG3DSA:2.30.30.70coord: 1..33
score: 2.5
IPR001147Ribosomal protein L21ePANTHERPTHR2098160S RIBOSOMAL PROTEIN L21coord: 1..31
score: 4.6
IPR001147Ribosomal protein L21ePFAMPF01157Ribosomal_L21ecoord: 1..35
score: 1.2
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 1..33
score: 9.93

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.356250Wax gourdcgywgoB710
Cucsa.356250Wax gourdcgywgoB711
Cucsa.356250Cucurbita maxima (Rimu)cgycmaB0969
Cucsa.356250Cucurbita maxima (Rimu)cgycmaB0970
Cucsa.356250Cucurbita moschata (Rifu)cgycmoB0972
Cucsa.356250Cucurbita moschata (Rifu)cgycmoB0973
Cucsa.356250Wild cucumber (PI 183967)cgycpiB528
Cucsa.356250Cucumber (Chinese Long) v2cgycuB500
Cucsa.356250Melon (DHL92) v3.5.1cgymeB574
Cucsa.356250Watermelon (Charleston Gray)cgywcgB605
Cucsa.356250Watermelon (Charleston Gray)cgywcgB607
Cucsa.356250Watermelon (97103) v1cgywmB641
Cucsa.356250Cucurbita pepo (Zucchini)cgycpeB0927
Cucsa.356250Cucurbita pepo (Zucchini)cgycpeB0928
Cucsa.356250Bottle gourd (USVL1VR-Ls)cgylsiB573
Cucsa.356250Melon (DHL92) v3.6.1cgymedB575
Cucsa.356250Silver-seed gourdcarcgyB0613
Cucsa.356250Silver-seed gourdcarcgyB1085
Cucsa.356250Cucumber (Chinese Long) v3cgycucB542
Cucsa.356250Watermelon (97103) v2cgywmbB611