Cucsa.356220 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.356220
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold03577 : 942408 .. 942864 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTTTGAGCCCTTAAACTGCTCCTGTATACAGAGGAAGTTAGTGACCAGCTCCATCTCTCCTTCTATGTGTCCTCTATGCAAAAATCAAAGGGAGGAATTACCGCATCGATTCTTTCATTGCACGAATTCTGCAAACTGTTGGAGGAAATTTTTCTCAGTTTTCCGAACTGCTTGGGTGTTTGAAAATAACTTTAGTCTTAACGTACAGCAGCTATTATTGAAAAAGAAACAGCGTTTGCTATGGGAAAAACATGGTCAAAGCACTACTTGCAGATTTGTGGTTTGAGAGGAAACAAAGAACATTTCATGACAAGGAAATGAGGTGGATAGATCATTTTGAGTCGGCAGCTAGTAACACTTCAACTTGGTGTTCTGTAAATAAAGAATTTGAAGCTTATAGCATTCAGAAGATAAGCTTAAATTGGGGTGTTTTTATTTGTCCAGATTATTAG

mRNA sequence

atgatttttgagcccttaaactgctcctgtatacagaggaagttagtgaccagctccatctctccttctatgtgtcctctatgcAAAAATCAAAGGGAGGAATTACCGCATCGATTCTTTCATTGCACGAATTCTGCAAACTGTTGGAGGAAATTTTTCTCAGTTTTCCGAACTGCTTGGGTcgtttgctatgggaaaaacatggtcaaagcactacttgcagatttgtggtttgagaggaaacaaagaacatttcatgacaaggaaatgaggtggatagatcattttgagtcggcagctagtaacacttcaacttggtgttctgtaaataaagaatttgaagcttatagcattcagaagataagcttaaattggggtgtttttatTTGTCCAGATTATTAG

Coding sequence (CDS)

ATGATTTTTGAGCCCTTAAACTGCTCCTGTATACAGAGGAAGTTAGTGACCAGCTCCATCTCTCCTTCTATGTGTCCTCTATGCAAAAATCAAAGGGAGGAATTACCGCATCGATTCTTTCATTGCACGAATTCTGCAAACTGTTGGAGGAAATTTTTCTCAGTTTTCCGAACTGCTTGGGTCGTTTGCTATGGGAAAAACATGGTCAAAGCACTACTTGCAGATTTGTGGTTTGAGAGGAAACAAAGAACATTTCATGACAAGGAAATGAGGTGGATAGATCATTTTGAGTCGGCAGCTAGTAACACTTCAACTTGGTGTTCTGTAAATAAAGAATTTGAAGCTTATAGCATTCAGAAGATAAGCTTAAATTGGGGTGTTTTTATTTGTCCAGATTATTAG

Protein sequence

MIFEPLNCSCIQRKLVTSSISPSMCPLCKNQREELPHRFFHCTNSANCWRKFFSVFRTAWVVCYGKNMVKALLADLWFERKQRTFHDKEMRWIDHFESAASNTSTWCSVNKEFEAYSIQKISLNWGVFICPDY*
Homology
[Close]
BLAST of Cucsa.356220 vs. TrEMBL
Match: M5WJ76_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015871mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.4e-08
Identity = 41/137 (29.93%), Postives = 58/137 (42.34%), Query Frame = 1 

Query: 8    CSCIQRKLVTSSISPSMCPLCKNQREELPHRFFHCTNSANCWRKFFSVFRTAWVV---CY 67
            C CIQR+     +SPS C LCK   E + H F HC+ S   W K        WV+   C+
Sbjct: 1354 CDCIQRRQPKMCLSPSWCVLCKENAENIDHLFIHCSYSLRLWWKMLGALGVEWVIPKGCF 1413

Query: 68   ------------GKN-------MVKALLADLWFERKQRTFHDK-EMRWIDHFESAASNTS 122
                        GK        +V A+  ++W ER QR F     +R  + ++      S
Sbjct: 1414 ELLSINLRISGKGKRAGILRDCLVHAIFWNIWMERNQRIFQGHIGVRVEELWDRIKFWAS 1473

[Close]
BLAST of Cucsa.356220 vs. TrEMBL
Match: M5XV38_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019854mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.4e-08
Identity = 41/137 (29.93%), Postives = 58/137 (42.34%), Query Frame = 1 

Query: 8   CSCIQRKLVTSSISPSMCPLCKNQREELPHRFFHCTNSANCWRKFFSVFRTAWVV---CY 67
           C CIQR+     +SPS C LCK   E + H F HC+ S   W K        WV+   C+
Sbjct: 324 CDCIQRRQPKMCLSPSWCVLCKENAENIDHLFIHCSYSLRLWWKMLGALGVEWVIPKGCF 383

Query: 68  ------------GKN-------MVKALLADLWFERKQRTFHDK-EMRWIDHFESAASNTS 122
                       GK        +V A+  ++W ER QR F     +R  + ++      S
Sbjct: 384 ELLSINLRISGKGKRAGILRDCLVHAIFWNIWMERNQRIFQGHIGVRVEELWDRIKFWAS 443

[Close]
BLAST of Cucsa.356220 vs. TrEMBL
Match: M5VH03_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019714mg PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.8e-08
Identity = 39/137 (28.47%), Postives = 59/137 (43.07%), Query Frame = 1 

Query: 8   CSCIQRKLVTSSISPSMCPLCKNQREELPHRFFHCTNSANCWRKFFSVFRTAWVV---CY 67
           C CIQR+     +SPS C LCK   E + H F HC+ S   W +        WV+   C+
Sbjct: 284 CDCIQRRQPKMCLSPSWCVLCKENAENIDHLFIHCSYSLKLWWRMLGALGVEWVIPKGCF 343

Query: 68  ------------GKN-------MVKALLADLWFERKQRTFHDK-EMRWIDHFESAASNTS 122
                       GK        +V A+  ++W ER ++ F    E+R  + ++      S
Sbjct: 344 ELLSINLRISGKGKRAGILRDCLVHAIFWNIWMERNRKKFQGHIEVRVEELWDRIKFWAS 403

[Close]
BLAST of Cucsa.356220 vs. TrEMBL
Match: M5X4S0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021750mg PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-07
Identity = 34/102 (33.33%), Postives = 44/102 (43.14%), Query Frame = 1 

Query: 8   CSCIQRKLVTSSISPSMCPLCKNQREELPHRFFHCTNSANCWRKFFSVFRTAWVV---CY 67
           C CIQR+     +SPS C LCK   E + H F HC+ S   W K        WV+   C+
Sbjct: 810 CDCIQRRQPKMCLSPSWCVLCKENAENIDHLFLHCSYSLRLWWKMLGALGVEWVIPKGCF 869

Query: 68  ------------GKN-------MVKALLADLWFERKQRTFHD 88
                       GK        +V A+  ++W ER QR F D
Sbjct: 870 ELLSINLRISGKGKRAGILRDCLVHAIFWNIWMERNQRIFQD 911

[Close]
BLAST of Cucsa.356220 vs. TrEMBL
Match: M5X8A1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa017388mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.4e-07
Identity = 39/137 (28.47%), Postives = 58/137 (42.34%), Query Frame = 1 

Query: 8   CSCIQRKLVTSSISPSMCPLCKNQREELPHRFFHCTNSANCWRKFFSVFRTAWVV---CY 67
           C CIQR+     +SPS C LCK   E + H F HC+ S   W +        WV+   C+
Sbjct: 146 CDCIQRRQPKICLSPSWCVLCKENAENIDHLFIHCSYSLKLWWRMLGALGAEWVIPKGCF 205

Query: 68  ------------GKN-------MVKALLADLWFERKQRTFHDK-EMRWIDHFESAASNTS 122
                       GK        +V A+  ++W ER +R F     +R  + ++      S
Sbjct: 206 ELLSINLRISGKGKRAGILRDCLVHAIFWNIWMERYRRIFQGHIGVRVEELWDRIKFWAS 265

[Close]
BLAST of Cucsa.356220 vs. NCBI nr
Match: gi|596232261|ref|XP_007224309.1| (hypothetical protein PRUPE_ppa019854mg [Prunus persica])

HSP 1 Score: 65.9 bits (159), Expect = 6.3e-08
Identity = 41/137 (29.93%), Postives = 58/137 (42.34%), Query Frame = 1 

Query: 8   CSCIQRKLVTSSISPSMCPLCKNQREELPHRFFHCTNSANCWRKFFSVFRTAWVV---CY 67
           C CIQR+     +SPS C LCK   E + H F HC+ S   W K        WV+   C+
Sbjct: 324 CDCIQRRQPKMCLSPSWCVLCKENAENIDHLFIHCSYSLRLWWKMLGALGVEWVIPKGCF 383

Query: 68  ------------GKN-------MVKALLADLWFERKQRTFHDK-EMRWIDHFESAASNTS 122
                       GK        +V A+  ++W ER QR F     +R  + ++      S
Sbjct: 384 ELLSINLRISGKGKRAGILRDCLVHAIFWNIWMERNQRIFQGHIGVRVEELWDRIKFWAS 443

[Close]
BLAST of Cucsa.356220 vs. NCBI nr
Match: gi|595882371|ref|XP_007212580.1| (hypothetical protein PRUPE_ppa015871mg, partial [Prunus persica])

HSP 1 Score: 65.9 bits (159), Expect = 6.3e-08
Identity = 41/137 (29.93%), Postives = 58/137 (42.34%), Query Frame = 1 

Query: 8    CSCIQRKLVTSSISPSMCPLCKNQREELPHRFFHCTNSANCWRKFFSVFRTAWVV---CY 67
            C CIQR+     +SPS C LCK   E + H F HC+ S   W K        WV+   C+
Sbjct: 1354 CDCIQRRQPKMCLSPSWCVLCKENAENIDHLFIHCSYSLRLWWKMLGALGVEWVIPKGCF 1413

Query: 68   ------------GKN-------MVKALLADLWFERKQRTFHDK-EMRWIDHFESAASNTS 122
                        GK        +V A+  ++W ER QR F     +R  + ++      S
Sbjct: 1414 ELLSINLRISGKGKRAGILRDCLVHAIFWNIWMERNQRIFQGHIGVRVEELWDRIKFWAS 1473

[Close]
BLAST of Cucsa.356220 vs. NCBI nr
Match: gi|595790823|ref|XP_007199160.1| (hypothetical protein PRUPE_ppa019714mg, partial [Prunus persica])

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 39/137 (28.47%), Postives = 59/137 (43.07%), Query Frame = 1 

Query: 8   CSCIQRKLVTSSISPSMCPLCKNQREELPHRFFHCTNSANCWRKFFSVFRTAWVV---CY 67
           C CIQR+     +SPS C LCK   E + H F HC+ S   W +        WV+   C+
Sbjct: 284 CDCIQRRQPKMCLSPSWCVLCKENAENIDHLFIHCSYSLKLWWRMLGALGVEWVIPKGCF 343

Query: 68  ------------GKN-------MVKALLADLWFERKQRTFHDK-EMRWIDHFESAASNTS 122
                       GK        +V A+  ++W ER ++ F    E+R  + ++      S
Sbjct: 344 ELLSINLRISGKGKRAGILRDCLVHAIFWNIWMERNRKKFQGHIEVRVEELWDRIKFWAS 403

[Close]
BLAST of Cucsa.356220 vs. NCBI nr
Match: gi|595883970|ref|XP_007212886.1| (hypothetical protein PRUPE_ppa021750mg, partial [Prunus persica])

HSP 1 Score: 63.2 bits (152), Expect = 4.1e-07
Identity = 34/102 (33.33%), Postives = 44/102 (43.14%), Query Frame = 1 

Query: 8   CSCIQRKLVTSSISPSMCPLCKNQREELPHRFFHCTNSANCWRKFFSVFRTAWVV---CY 67
           C CIQR+     +SPS C LCK   E + H F HC+ S   W K        WV+   C+
Sbjct: 810 CDCIQRRQPKMCLSPSWCVLCKENAENIDHLFLHCSYSLRLWWKMLGALGVEWVIPKGCF 869

Query: 68  ------------GKN-------MVKALLADLWFERKQRTFHD 88
                       GK        +V A+  ++W ER QR F D
Sbjct: 870 ELLSINLRISGKGKRAGILRDCLVHAIFWNIWMERNQRIFQD 911

[Close]
BLAST of Cucsa.356220 vs. NCBI nr
Match: gi|596061092|ref|XP_007221093.1| (hypothetical protein PRUPE_ppa017388mg, partial [Prunus persica])

HSP 1 Score: 62.0 bits (149), Expect = 9.1e-07
Identity = 39/137 (28.47%), Postives = 58/137 (42.34%), Query Frame = 1 

Query: 8   CSCIQRKLVTSSISPSMCPLCKNQREELPHRFFHCTNSANCWRKFFSVFRTAWVV---CY 67
           C CIQR+     +SPS C LCK   E + H F HC+ S   W +        WV+   C+
Sbjct: 146 CDCIQRRQPKICLSPSWCVLCKENAENIDHLFIHCSYSLKLWWRMLGALGAEWVIPKGCF 205

Query: 68  ------------GKN-------MVKALLADLWFERKQRTFHDK-EMRWIDHFESAASNTS 122
                       GK        +V A+  ++W ER +R F     +R  + ++      S
Sbjct: 206 ELLSINLRISGKGKRAGILRDCLVHAIFWNIWMERYRRIFQGHIGVRVEELWDRIKFWAS 265

The following BLAST results are available for this feature:
BLAST of Cucsa.356220 vs. TrEMBL
Match NameE-valueIdentityDescription
M5WJ76_PRUPE4.4e-0829.93Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015871mg PE=4 S... [more]
M5XV38_PRUPE4.4e-0829.93Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019854mg PE=4 SV=1[more]
M5VH03_PRUPE9.8e-0828.47Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019714mg PE=4 S... [more]
M5X4S0_PRUPE2.9e-0733.33Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021750mg PE=4 S... [more]
M5X8A1_PRUPE6.4e-0728.47Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa017388mg PE=4 S... [more]
BLAST of Cucsa.356220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|596232261|ref|XP_007224309.1|6.3e-0829.93hypothetical protein PRUPE_ppa019854mg [Prunus persica][more]
gi|595882371|ref|XP_007212580.1|6.3e-0829.93hypothetical protein PRUPE_ppa015871mg, partial [Prunus persica][more]
gi|595790823|ref|XP_007199160.1|1.4e-0728.47hypothetical protein PRUPE_ppa019714mg, partial [Prunus persica][more]
gi|595883970|ref|XP_007212886.1|4.1e-0733.33hypothetical protein PRUPE_ppa021750mg, partial [Prunus persica][more]
gi|596061092|ref|XP_007221093.1|9.1e-0728.47hypothetical protein PRUPE_ppa017388mg, partial [Prunus persica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.356220.1Cucsa.356220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.356220Cucurbita maxima (Rimu)cgycmaB0969
Cucsa.356220Cucurbita maxima (Rimu)cgycmaB0970
Cucsa.356220Cucurbita moschata (Rifu)cgycmoB0972
Cucsa.356220Cucurbita moschata (Rifu)cgycmoB0973
Cucsa.356220Wild cucumber (PI 183967)cgycpiB528
Cucsa.356220Cucumber (Chinese Long) v2cgycuB500
Cucsa.356220Melon (DHL92) v3.5.1cgymeB574
Cucsa.356220Watermelon (Charleston Gray)cgywcgB605
Cucsa.356220Watermelon (Charleston Gray)cgywcgB607
Cucsa.356220Watermelon (97103) v1cgywmB641
Cucsa.356220Cucurbita pepo (Zucchini)cgycpeB0927
Cucsa.356220Cucurbita pepo (Zucchini)cgycpeB0928
Cucsa.356220Bottle gourd (USVL1VR-Ls)cgylsiB573
Cucsa.356220Melon (DHL92) v3.6.1cgymedB575
Cucsa.356220Silver-seed gourdcarcgyB0613
Cucsa.356220Silver-seed gourdcarcgyB1085
Cucsa.356220Cucumber (Chinese Long) v3cgycucB542
Cucsa.356220Watermelon (97103) v2cgywmbB611
Cucsa.356220Wax gourdcgywgoB710
Cucsa.356220Wax gourdcgywgoB711