Cucsa.356170 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.356170
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Locationscaffold03577 : 918499 .. 919938 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAATAGTAGACTGTTTCAGCAAAATAGCTCATTATTTAGCGTGAAAGAAAACTAATGATGTTGTCTATATAGCAAATCTCTTATTTAGAGAGGTGGTTCGTCTTTACCAAGTGCCAAAATCAATTGTATTTAACTGGGAGGTGAAGTTCCTCGGCCATTTTTGGTGCATCCTATGGAAGAAGTTTGATACAACTTTGAAGTTTAGCACTACCTCACATCCCCAAACCAATGGCAAAACGGAAGTTACAAAATAGAACATTAGGGAATCTCATTTGTTGCTTAAGTGGACTGAGACCTGAACAGTGGGATTTGTAGCTTGCATAAGCAGAGTTTGCTTTCATTAACATGAAGAACCGAGGTACTGGTTTGGGGTAACCTTCCCCTTCTAAAAAGGAAGGGCTCTTCCATTTCCCCATTTCCTTTCATTTTATCAAATAACTAGTTTTTGTAGGTTCCAAGCTCCAAAAGAAAGTACGATAGCTACCCGAATAAAAAAaTACACATCAAACTATATTCCAATATTAAAGAAGAGATTACTAGTTTTTCAAAAGGCTCTCTCTCACCCACGATAAAGTGACTCACCAAAAATTTGTCCTCCTTTCCCACACCCTAACTCTCTATTTATAATATAGACTCCCTAGCTAATTACCACCAAACCCCTTGCTAATATCCGGCTAATGTTACCAAATATATGCCTCTTAGTACTCTCACGGAAGATTACATTCAAATGGTCATCGAGGATACAAGAAGTCATGAAGTAGCACAGCTTTCTTTGCTAAGAAACAATTCCATCTGCCATACGACTGACCTTGTTTTTtCTTAAACTCAACATTGCCTTGGTACTGGTGACACTACCTTTTTTTGGAAAGATGGCTGACATGATTGTGGCATGCTCTCTCTTGTCCTCCTGATATTTTTGTTGTTGAAGCTTGGCTCACTGATTCTGAGACTTTGGACTTGTATTTTCAATGTAATTTTACTGAACGTGAAGACATGAAATGCAAATATGGGTATCTTTGTCTATTATTTTGTCTTCTATCAGATTTCGTATGGTGCATGATTCTTGGAGATGGACTATTGACTCCTCATCTACGTTTACTGGGAAATCTATGATTAATGACTTGACAAGTGCTCTCGAGCCCTCTAAAACGGATTTTTATTCTATCATTTGAATGAATCACTTCCCGAAGAAAATTAAAATTTTTCTTTGAGAGCTTAGTTATAAAGCTATAAACATGGCTGATAACCTCTAGCGTCGTAGGCCTTATATGTCACTTTCTCCTTGGTGTATTATGTGTTGTGCTAATGCAAAATCCCCTGTTCATCTTTTTATTCATTGTCCTTTTGCTCGACAATTTTGGGATCTCATTTTGGAGGCTTTTGGTAGGTCTACCGCTTTGTCCAATGATATTTCAGATATCCTTAACTCTCTTATG

mRNA sequence

atggtaatagtagactgtttcagcaaaatagctcattatttagcagaggtggttcgtctttaccaagtgccaaaatcaattgtatttaactgggaggtgaagttcctcggccatttttggtgcatcctatggaagaagtttgatacaactttgaagtttagcactacctcacatccccaaaccaatggcaaaacggaacgtcgtaggccttatatgtcactttctccttggtgtattatgtgttgtgctaatgcaaaatcccctgttcatctttttattcattgtccttttgctcgacaattttgggatctcattttggaggcttttggtaggtctaccgctttgtccaatgatatttcagatatccttaactctcttatg

Coding sequence (CDS)

ATGGTAATAGTAGACTGTTTCAGCAAAATAGCTCATTATTTAGCAGAGGTGGTTCGTCTTTACCAAGTGCCAAAATCAATTGTATTTAACTGGGAGGTGAAGTTCCTCGGCCATTTTTGGTGCATCCTATGGAAGAAGTTTGATACAACTTTGAAGTTTAGCACTACCTCACATCCCCAAACCAATGGCAAAACGGAACGTCGTAGGCCTTATATGTCACTTTCTCCTTGGTGTATTATGTGTTGTGCTAATGCAAAATCCCCTGTTCATCTTTTTATTCATTGTCCTTTTGCTCGACAATTTTGGGATCTCATTTTGGAGGCTTTTGGTAGGTCTACCGCTTTGTCCAATGATATTTCAGATATCCTTAACTCTCTTATG

Protein sequence

MVIVDCFSKIAHYLAEVVRLYQVPKSIVFNWEVKFLGHFWCILWKKFDTTLKFSTTSHPQTNGKTERRRPYMSLSPWCIMCCANAKSPVHLFIHCPFARQFWDLILEAFGRSTALSNDISDILNSLM
Homology
[Close]
BLAST of Cucsa.356170 vs. TrEMBL
Match: A0A151UDU7_CAJCA (Transposon Ty3-G Gag-Pol polyprotein (Fragment) OS=Cajanus cajan GN=KK1_047006 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.7e-14
Identity = 41/81 (50.62%), Postives = 51/81 (62.96%), Query Frame = 1 

Query: 2   VIVDCFSKIAH----------------YLAEVVRLYQVPKSIVFNWEVKFLGHFWCILWK 61
           V+VDCFSK+AH                Y   VV+L+ +PK+IV + + KFL HFWC+LW 
Sbjct: 228 VVVDCFSKMAHFIPCHKVDDASNIAKLYFRYVVKLHGLPKTIVSDRDTKFLSHFWCVLWS 287

Query: 62  KFDTTLKFSTTSHPQTNGKTE 67
           +  T L FSTT HPQTNGKTE
Sbjct: 288 RLGTHLLFSTTCHPQTNGKTE 308

[Close]
BLAST of Cucsa.356170 vs. TrEMBL
Match: A0A061FQC4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_035549 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.6e-13
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 1 

Query: 2    VIVDCFSKIAHYLA----------------EVVRLYQVPKSIVFNWEVKFLGHFWCILWK 61
            V+VD FSK+AH++                 E+VRL+++P SIV + +VKF+GHFW  LW+
Sbjct: 1051 VVVDRFSKMAHFIPCFRTSDATHIAELFFREIVRLHRIPTSIVSDRDVKFMGHFWRTLWR 1110

Query: 62   KFDTTLKFSTTSHPQTNGKTE 67
            KF T LK+S+T HPQT+G+TE
Sbjct: 1111 KFGTELKYSSTCHPQTDGQTE 1131

[Close]
BLAST of Cucsa.356170 vs. TrEMBL
Match: A0A061FVF4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_013224 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.4e-13
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1 

Query: 2   VIVDCFSKIAHYLA----------------EVVRLYQVPKSIVFNWEVKFLGHFWCILWK 61
           V+VD FSK+AH++                 EVVRL+ +P SIV N +VKF+GHFW  LW+
Sbjct: 71  VVVDRFSKMAHFIPCFRTFDATHIAELFFREVVRLHGIPTSIVSNRDVKFMGHFWKTLWR 130

Query: 62  KFDTTLKFSTTSHPQTNGKTE 67
           KF T LK+S+T HPQT+G+T+
Sbjct: 131 KFGTELKYSSTCHPQTDGQTK 151

[Close]
BLAST of Cucsa.356170 vs. TrEMBL
Match: A0A151RMS8_CAJCA (Transposon Ty3-I Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_034692 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.4e-13
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = 1 

Query: 2   VIVDCFSKIAHYLA----------------EVVRLYQVPKSIVFNWEVKFLGHFWCILWK 61
           V+VDCFSK+AH++                 EVVRL+ +PK+IV N +VKFL HFW  +W 
Sbjct: 82  VVVDCFSKMAHFIPCHKVDDASNIAKLFFQEVVRLHGLPKTIVSNRDVKFLSHFWKTIWS 141

Query: 62  KFDTTLKFSTTSHPQTNGKTE 67
           +  T L FSTT HPQT+G+TE
Sbjct: 142 RLGTKLLFSTTCHPQTDGQTE 162

[Close]
BLAST of Cucsa.356170 vs. TrEMBL
Match: A0A151QMH3_CAJCA (Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_048154 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.6e-13
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1 

Query: 2   VIVDCFSKIAHYLA----------------EVVRLYQVPKSIVFNWEVKFLGHFWCILWK 61
           V+VD FSK+AH++                 EVVRL+ +PK+IVF+ +VKFL HFW +LW+
Sbjct: 475 VVVDRFSKMAHFIPCHKVDDASYIAKLFFREVVRLHGLPKTIVFDRDVKFLSHFWKVLWE 534

Query: 62  KFDTTLKFSTTSHPQTNGKTE 67
           K  T   +STTSHPQT+G+TE
Sbjct: 535 KLGTKFLYSTTSHPQTDGQTE 555

[Close]
BLAST of Cucsa.356170 vs. NCBI nr
Match: gi|1012366306|gb|KYP77487.1| (Transposon Ty3-G Gag-Pol polyprotein, partial [Cajanus cajan])

HSP 1 Score: 85.1 bits (209), Expect = 9.5e-14
Identity = 41/81 (50.62%), Postives = 51/81 (62.96%), Query Frame = 1 

Query: 2   VIVDCFSKIAH----------------YLAEVVRLYQVPKSIVFNWEVKFLGHFWCILWK 61
           V+VDCFSK+AH                Y   VV+L+ +PK+IV + + KFL HFWC+LW 
Sbjct: 228 VVVDCFSKMAHFIPCHKVDDASNIAKLYFRYVVKLHGLPKTIVSDRDTKFLSHFWCVLWS 287

Query: 62  KFDTTLKFSTTSHPQTNGKTE 67
           +  T L FSTT HPQTNGKTE
Sbjct: 288 RLGTHLLFSTTCHPQTNGKTE 308

[Close]
BLAST of Cucsa.356170 vs. NCBI nr
Match: gi|590600507|ref|XP_007019474.1| (Uncharacterized protein TCM_035549 [Theobroma cacao])

HSP 1 Score: 82.0 bits (201), Expect = 8.1e-13
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 1 

Query: 2    VIVDCFSKIAHYLA----------------EVVRLYQVPKSIVFNWEVKFLGHFWCILWK 61
            V+VD FSK+AH++                 E+VRL+++P SIV + +VKF+GHFW  LW+
Sbjct: 1051 VVVDRFSKMAHFIPCFRTSDATHIAELFFREIVRLHRIPTSIVSDRDVKFMGHFWRTLWR 1110

Query: 62   KFDTTLKFSTTSHPQTNGKTE 67
            KF T LK+S+T HPQT+G+TE
Sbjct: 1111 KFGTELKYSSTCHPQTDGQTE 1131

[Close]
BLAST of Cucsa.356170 vs. NCBI nr
Match: gi|1012332389|gb|KYP43822.1| (Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan])

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = 1 

Query: 2   VIVDCFSKIAHYLA----------------EVVRLYQVPKSIVFNWEVKFLGHFWCILWK 61
           V+VDCFSK+AH++                 EVVRL+ +PK+IV N +VKFL HFW  +W 
Sbjct: 82  VVVDCFSKMAHFIPCHKVDDASNIAKLFFQEVVRLHGLPKTIVSNRDVKFLSHFWKTIWS 141

Query: 62  KFDTTLKFSTTSHPQTNGKTE 67
           +  T L FSTT HPQT+G+TE
Sbjct: 142 RLGTKLLFSTTCHPQTDGQTE 162

[Close]
BLAST of Cucsa.356170 vs. NCBI nr
Match: gi|590666644|ref|XP_007037024.1| (Uncharacterized protein TCM_013224 [Theobroma cacao])

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1 

Query: 2   VIVDCFSKIAHYLA----------------EVVRLYQVPKSIVFNWEVKFLGHFWCILWK 61
           V+VD FSK+AH++                 EVVRL+ +P SIV N +VKF+GHFW  LW+
Sbjct: 71  VVVDRFSKMAHFIPCFRTFDATHIAELFFREVVRLHGIPTSIVSNRDVKFMGHFWKTLWR 130

Query: 62  KFDTTLKFSTTSHPQTNGKTE 67
           KF T LK+S+T HPQT+G+T+
Sbjct: 131 KFGTELKYSSTCHPQTDGQTK 151

[Close]
BLAST of Cucsa.356170 vs. NCBI nr
Match: gi|1012317780|gb|KYP31501.1| (Retrotransposable element Tf2 [Cajanus cajan])

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-12
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1 

Query: 2   VIVDCFSKIAHYLA----------------EVVRLYQVPKSIVFNWEVKFLGHFWCILWK 61
           V+VD FSK+AH++                 EVVRL+ +PK+IVF+ +VKFL HFW +LW+
Sbjct: 475 VVVDRFSKMAHFIPCHKVDDASYIAKLFFREVVRLHGLPKTIVFDRDVKFLSHFWKVLWE 534

Query: 62  KFDTTLKFSTTSHPQTNGKTE 67
           K  T   +STTSHPQT+G+TE
Sbjct: 535 KLGTKFLYSTTSHPQTDGQTE 555

The following BLAST results are available for this feature:
BLAST of Cucsa.356170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A151UDU7_CAJCA6.7e-1450.62Transposon Ty3-G Gag-Pol polyprotein (Fragment) OS=Cajanus cajan GN=KK1_047006 P... [more]
A0A061FQC4_THECC5.6e-1348.15Uncharacterized protein OS=Theobroma cacao GN=TCM_035549 PE=4 SV=1[more]
A0A061FVF4_THECC7.4e-1349.38Uncharacterized protein OS=Theobroma cacao GN=TCM_013224 PE=4 SV=1[more]
A0A151RMS8_CAJCA7.4e-1349.38Transposon Ty3-I Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_034692 PE=4 SV=1[more]
A0A151QMH3_CAJCA9.6e-1349.38Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_048154 PE=4 SV=1[more]
BLAST of Cucsa.356170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1012366306|gb|KYP77487.1|9.5e-1450.62Transposon Ty3-G Gag-Pol polyprotein, partial [Cajanus cajan][more]
gi|590600507|ref|XP_007019474.1|8.1e-1348.15Uncharacterized protein TCM_035549 [Theobroma cacao][more]
gi|1012332389|gb|KYP43822.1|1.1e-1249.38Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan][more]
gi|590666644|ref|XP_007037024.1|1.1e-1249.38Uncharacterized protein TCM_013224 [Theobroma cacao][more]
gi|1012317780|gb|KYP31501.1|1.4e-1249.38Retrotransposable element Tf2 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.356170.1Cucsa.356170.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 10..67
score: 9.
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 1..69
score: 4.55
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 2..72
score: 5.6
NoneNo IPR availablePANTHERPTHR24559:SF207SUBFAMILY NOT NAMEDcoord: 2..72
score: 5.6