Cucsa.356160 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.356160
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Tubulin-specific chaperone E
Location	scaffold03577 : 914300 .. 914919 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGAAGAGCTTAAGAGTTTTTATGGGATTGAAGATAATAGTGCATCAGTCGGACCAGCCGGACCTCAGAAGCTGTCTTCTGGTCTCATTTGTAGGTGTAAATCCTGAAATTTGACATATGGGACATTTTAAAACCATTACTTATCCTCATTGAATTATTTGTGTGATAAATTTCTCCAGCAATCACTTTAAAGTGTGTGGGAGCATCAATTGGTGAGAAGCCACCAGTGACAAAGAAACTGCCACCCACTACATCAGTTACTGTCCTTGCTTTTAACGTAGTACTTTGTTGCTTCATGTTGCTAGTTTCACCTCTAAATAATGACTTGTGATCTTTAGGTTGGCAAGTTAAAGATGCTTTGTGAAAGCTTTTTCAAACTAAAATCTATCAAGCTAAAGTTGTATCTTCAAGAAGAGGTTTGAACACATAATTTCTTACAGAAACCATAAATTTATATCCATCGCCTTCTAATGACGTCCTATTGTCATTAATCTGCAACTGAGCATGCTTCATTCTCAGGATTCTCCCATGCCGATATTGCTTGAGGATGATATGACATCCCTGATGGATCTTGGCGTTGGGAATGAATCTAATATTCTTGTGGATGAAGAGAGTTAA

mRNA sequence

ATTTGAAGAGCTTAAGAGTTTTTATGGGATTGAAGATAATAGTGCATCAGTCGGACCAGCCGGACCTCAGAAGCTGTCTTCTGGTCTCATTTCAATCACTTTAAAGTGTGTGGGAGCATCAATTGGTGAGAAGCCACCAGTGACAAAGAAACTGCCACCCACTACATCAGTTGGCAAGTTAAAGATGCTTTGTGAAAGCTTTTTCAAACTAAAATCTATCAAGCTAAAGTTGTATCTTCAAGAAGAGGATTCTCCCATGCCGATATTGCTTGAGGATGATATGACATCCCTGATGGATCTTGGCGTTGGGAATGAATCTAATATTCTTGTGGATGAAGAGAGTTAA

Coding sequence (CDS)

ATTTGAAGAGCTTAAGAGTTTTTATGGGATTGAAGATAATAGTGCATCAGTCGGACCAGCCGGACCTCAGAAGCTGTCTTCTGGTCTCATTTCAATCACTTTAAAGTGTGTGGGAGCATCAATTGGTGAGAAGCCACCAGTGACAAAGAAACTGCCACCCACTACATCAGTTGGCAAGTTAAAGATGCTTTGTGAAAGCTTTTTCAAACTAAAATCTATCAAGCTAAAGTTGTATCTTCAAGAAGAGGATTCTCCCATGCCGATATTGCTTGAGGATGATATGACATCCCTGATGGATCTTGGCGTTGGGAATGAATCTAATATTCTTGTGGATGAAGAGAGTTAA

Protein sequence

FEELKSFYGIEDNSASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPPTTSVGKLKMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES*

Homology

[Close]

BLAST of Cucsa.356160 vs. Swiss-Prot
Match: TBCE_ARATH (Tubulin-folding cofactor E OS=Arabidopsis thaliana GN=TFCE PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-32
Identity = 69/114 (60.53%), Postives = 90/114 (78.95%), Query Frame = 1


Query: 1   FEELKSFYGIEDNSASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPPTTSVGKL 60
           F ELK  +GIED  AS   +GP+ ++SGLISITLKCVG S+GEKP +TKKLP + +VGKL
Sbjct: 418 FYELKKLHGIEDERASAENSGPKNIASGLISITLKCVGPSMGEKPHLTKKLPGSITVGKL 477

Query: 61  KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES 115
           K+L E+FFKLKSIK +L+LQEE SP P  L+D+  +L+D+G+ + S +LVDEES
Sbjct: 478 KILSENFFKLKSIKPRLFLQEEGSPFPTALDDETATLLDVGICDGSTLLVDEES 531

[Close]

BLAST of Cucsa.356160 vs. TrEMBL
Match: A0A0A0LXY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G650060 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 2.9e-56
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   FEELKSFYGIEDNSASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPPTTSVGKL 60
           FEELKSFYGIEDNSASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPPTTSVGKL
Sbjct: 95  FEELKSFYGIEDNSASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPPTTSVGKL 154

Query: 61  KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES 115
           KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES
Sbjct: 155 KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES 208

[Close]

BLAST of Cucsa.356160 vs. TrEMBL
Match: A0A061FIE2_THECC (Tubulin folding cofactor OS=Theobroma cacao GN=TCM_036281 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 8.9e-42
Identity = 86/114 (75.44%), Postives = 102/114 (89.47%), Query Frame = 1


Query: 1   FEELKSFYGIEDNSASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPPTTSVGKL 60
           F ELK+F+GIED   SVG AGPQK++SGL+S+TLKCVG SIGEK P+TKKLP TT+VGKL
Sbjct: 414 FVELKNFHGIEDERPSVGAAGPQKMASGLLSVTLKCVGPSIGEKLPLTKKLPATTTVGKL 473

Query: 61  KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES 115
           K+LCESFFKLKS+KLKL+LQEE SP+P+LL+D+M SLMD+GVG ES ILVDEES
Sbjct: 474 KVLCESFFKLKSLKLKLFLQEEGSPLPMLLDDEMASLMDIGVGTESTILVDEES 527

[Close]

BLAST of Cucsa.356160 vs. TrEMBL
Match: M5XWF5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003930mg PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.0e-41
Identity = 86/114 (75.44%), Postives = 100/114 (87.72%), Query Frame = 1


Query: 1   FEELKSFYGIEDNSASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPPTTSVGKL 60
           F ELK F+GIED    VG AGPQK++SGL+SITLKCVGASIGEKP +TKKLP  T+VGKL
Sbjct: 426 FAELKGFHGIEDEKPLVGAAGPQKMASGLLSITLKCVGASIGEKPSLTKKLPGATTVGKL 485

Query: 61  KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES 115
           K+LCESFFKLKSIKLKL+LQEE SP+P+LL+D+M +L DLG+GNES ILVDEES
Sbjct: 486 KILCESFFKLKSIKLKLFLQEEGSPLPMLLDDEMATLTDLGIGNESTILVDEES 539

[Close]

BLAST of Cucsa.356160 vs. TrEMBL
Match: D7TLE6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g05660 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 7.5e-41
Identity = 83/114 (72.81%), Postives = 99/114 (86.84%), Query Frame = 1


Query: 1   FEELKSFYGIEDNSASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPPTTSVGKL 60
           F ELK F+GIED     G AGPQK++SGL+SI LKC+GASIGEKPP+TKKLP TT++GKL
Sbjct: 428 FAELKEFHGIEDERPLTGAAGPQKMASGLLSINLKCIGASIGEKPPLTKKLPATTTIGKL 487

Query: 61  KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES 115
           K LCESFFKLKSIK +L+LQEE SP+PILL+D+M SLMDLG+G+ES IL+DEES
Sbjct: 488 KNLCESFFKLKSIKPRLFLQEEGSPLPILLDDEMASLMDLGIGSESTILIDEES 541

[Close]

BLAST of Cucsa.356160 vs. TrEMBL
Match: A5BW58_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016688 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 7.5e-41
Identity = 83/114 (72.81%), Postives = 99/114 (86.84%), Query Frame = 1


Query: 1   FEELKSFYGIEDNSASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPPTTSVGKL 60
           F ELK F+GIED     G AGPQK++SGL+SI LKC+GASIGEKPP+TKKLP TT++GKL
Sbjct: 488 FAELKEFHGIEDERPLTGAAGPQKMASGLLSINLKCIGASIGEKPPLTKKLPATTTIGKL 547

Query: 61  KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES 115
           K LCESFFKLKSIK +L+LQEE SP+PILL+D+M SLMDLG+G+ES IL+DEES
Sbjct: 548 KNLCESFFKLKSIKPRLFLQEEGSPLPILLDDEMASLMDLGIGSESTILIDEES 601

[Close]

BLAST of Cucsa.356160 vs. TAIR10
Match: AT1G71440.1 (AT1G71440.1 tubulin folding cofactor E / Pfifferling (PFI))

HSP 1 Score: 139.8 bits (351), Expect = 1.0e-33
Identity = 69/114 (60.53%), Postives = 90/114 (78.95%), Query Frame = 1


Query: 1   FEELKSFYGIEDNSASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPPTTSVGKL 60
           F ELK  +GIED  AS   +GP+ ++SGLISITLKCVG S+GEKP +TKKLP + +VGKL
Sbjct: 418 FYELKKLHGIEDERASAENSGPKNIASGLISITLKCVGPSMGEKPHLTKKLPGSITVGKL 477

Query: 61  KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES 115
           K+L E+FFKLKSIK +L+LQEE SP P  L+D+  +L+D+G+ + S +LVDEES
Sbjct: 478 KILSENFFKLKSIKPRLFLQEEGSPFPTALDDETATLLDVGICDGSTLLVDEES 531

[Close]

BLAST of Cucsa.356160 vs. NCBI nr
Match: gi|778663990|ref|XP_011660191.1| (PREDICTED: tubulin-folding cofactor E isoform X2 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 4.1e-56
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   FEELKSFYGIEDNSASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPPTTSVGKL 60
           FEELKSFYGIEDNSASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPPTTSVGKL
Sbjct: 425 FEELKSFYGIEDNSASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPPTTSVGKL 484

Query: 61  KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES 115
           KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES
Sbjct: 485 KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES 538

[Close]

BLAST of Cucsa.356160 vs. NCBI nr
Match: gi|778663987|ref|XP_011660189.1| (PREDICTED: tubulin-folding cofactor E isoform X1 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 4.1e-56
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   FEELKSFYGIEDNSASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPPTTSVGKL 60
           FEELKSFYGIEDNSASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPPTTSVGKL
Sbjct: 451 FEELKSFYGIEDNSASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPPTTSVGKL 510

Query: 61  KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES 115
           KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES
Sbjct: 511 KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES 564

[Close]

BLAST of Cucsa.356160 vs. NCBI nr
Match: gi|700211522|gb|KGN66618.1| (hypothetical protein Csa_1G650060 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 4.1e-56
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   FEELKSFYGIEDNSASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPPTTSVGKL 60
           FEELKSFYGIEDNSASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPPTTSVGKL
Sbjct: 95  FEELKSFYGIEDNSASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPPTTSVGKL 154

Query: 61  KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES 115
           KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES
Sbjct: 155 KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES 208

[Close]

BLAST of Cucsa.356160 vs. NCBI nr
Match: gi|659090381|ref|XP_008445986.1| (PREDICTED: tubulin-folding cofactor E isoform X1 [Cucumis melo])

HSP 1 Score: 219.9 bits (559), Expect = 2.2e-54
Identity = 111/114 (97.37%), Postives = 111/114 (97.37%), Query Frame = 1


Query: 1   FEELKSFYGIEDNSASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPPTTSVGKL 60
           FEELK FYGIEDN ASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPP TSVGKL
Sbjct: 466 FEELKRFYGIEDNRASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPPATSVGKL 525

Query: 61  KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES 115
           KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES
Sbjct: 526 KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES 579

[Close]

BLAST of Cucsa.356160 vs. NCBI nr
Match: gi|659090385|ref|XP_008445988.1| (PREDICTED: tubulin-folding cofactor E isoform X3 [Cucumis melo])

HSP 1 Score: 219.9 bits (559), Expect = 2.2e-54
Identity = 111/114 (97.37%), Postives = 111/114 (97.37%), Query Frame = 1


Query: 1   FEELKSFYGIEDNSASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPPTTSVGKL 60
           FEELK FYGIEDN ASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPP TSVGKL
Sbjct: 425 FEELKRFYGIEDNRASVGPAGPQKLSSGLISITLKCVGASIGEKPPVTKKLPPATSVGKL 484

Query: 61  KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES 115
           KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES
Sbjct: 485 KMLCESFFKLKSIKLKLYLQEEDSPMPILLEDDMTSLMDLGVGNESNILVDEES 538

The following BLAST results are available for this feature:

BLAST of Cucsa.356160 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TBCE_ARATH	1.9e-32	60.53	Tubulin-folding cofactor E OS=Arabidopsis thaliana GN=TFCE PE=2 SV=1	[more]

BLAST of Cucsa.356160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXY2_CUCSA	2.9e-56	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G650060 PE=4 SV=1	[more]
A0A061FIE2_THECC	8.9e-42	75.44	Tubulin folding cofactor OS=Theobroma cacao GN=TCM_036281 PE=4 SV=1	[more]
M5XWF5_PRUPE	2.0e-41	75.44	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003930mg PE=4 SV=1	[more]
D7TLE6_VITVI	7.5e-41	72.81	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g05660 PE=4 SV=...	[more]
A5BW58_VITVI	7.5e-41	72.81	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016688 PE=4 SV=1	[more]

BLAST of Cucsa.356160 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G71440.1	1.0e-33	60.53	tubulin folding cofactor E / Pfifferling (PFI)	[more]

BLAST of Cucsa.356160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778663990\|ref\|XP_011660191.1\|	4.1e-56	100.00	PREDICTED: tubulin-folding cofactor E isoform X2 [Cucumis sativus]	[more]
gi\|778663987\|ref\|XP_011660189.1\|	4.1e-56	100.00	PREDICTED: tubulin-folding cofactor E isoform X1 [Cucumis sativus]	[more]
gi\|700211522\|gb\|KGN66618.1\|	4.1e-56	100.00	hypothetical protein Csa_1G650060 [Cucumis sativus]	[more]
gi\|659090381\|ref\|XP_008445986.1\|	2.2e-54	97.37	PREDICTED: tubulin-folding cofactor E isoform X1 [Cucumis melo]	[more]
gi\|659090385\|ref\|XP_008445988.1\|	2.2e-54	97.37	PREDICTED: tubulin-folding cofactor E isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0046486	glycerolipid metabolic process
biological_process	GO:0016042	lipid catabolic process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0004806	triglyceride lipase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.356160.1	Cucsa.356160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 109..114 scor
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 43..112 score: 6.
None	No IPR available	PANTHER	PTHR15140	TUBULIN-SPECIFIC CHAPERONE E	coord: 1..114 score: 6.7
None	No IPR available	PANTHER	PTHR15140:SF6	PROTEIN COEL-1, ISOFORM A	coord: 1..114 score: 6.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.356160	Csa1G650060	Cucumber (Chinese Long) v2	cgycuB500
Cucsa.356160	ClCG03G011780	Watermelon (Charleston Gray)	cgywcgB607
Cucsa.356160	CSPI01G31750	Wild cucumber (PI 183967)	cgycpiB528
Cucsa.356160	Lsi06G006530	Bottle gourd (USVL1VR-Ls)	cgylsiB573
Cucsa.356160	CsaV3_1G044090	Cucumber (Chinese Long) v3	cgycucB542
Cucsa.356160	Cla97C03G062030	Watermelon (97103) v2	cgywmbB611

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.356160	Wax gourd	cgywgoB710
Cucsa.356160	Wax gourd	cgywgoB711
Cucsa.356160	Cucurbita maxima (Rimu)	cgycmaB0969
Cucsa.356160	Cucurbita maxima (Rimu)	cgycmaB0970
Cucsa.356160	Cucurbita moschata (Rifu)	cgycmoB0972
Cucsa.356160	Cucurbita moschata (Rifu)	cgycmoB0973
Cucsa.356160	Melon (DHL92) v3.5.1	cgymeB574
Cucsa.356160	Watermelon (Charleston Gray)	cgywcgB605
Cucsa.356160	Watermelon (97103) v1	cgywmB639
Cucsa.356160	Watermelon (97103) v1	cgywmB641
Cucsa.356160	Cucurbita pepo (Zucchini)	cgycpeB0927
Cucsa.356160	Cucurbita pepo (Zucchini)	cgycpeB0928
Cucsa.356160	Melon (DHL92) v3.6.1	cgymedB575
Cucsa.356160	Silver-seed gourd	carcgyB0613
Cucsa.356160	Silver-seed gourd	carcgyB1085