Cucsa.352690 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.352690
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionNegative regulator of sporulation MDS3
Locationscaffold03533 : 441093 .. 441455 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATGGTGGATCAAGATGAGCGCTCCGTTGAGAAGTTTTACCTTCAGAGTCGCCTGTCGTCTCGGATTTCGCAAACGCGGTACGCGATGTCTTTACAAATATAAAACGATTATTCGTATTCTCTATCTCAAATTCAGATTGAATTTTTGTTGGATTTGTGTATGAAATGAGATAGGTTTAGTGAAATTGGGCCGAGATGTGAAGGCCTGTGAATACGAGGACGTCCACGTGATGTGGGAGATGCTGAAGAGAAACGAAACGGATCAACTAATTGGATCGTCAGAAAGGCGCCAGAAAAGGAAATCGCTATGGAATATATTTTGGTGGGCTCGATCAGCTCCATGCCTCGGCAAAATCTGA

mRNA sequence

ATGGAATGGTGGATCAAGATGAGCGCTCCGTTGAGAAGTTTTACCTTCAGAGTCGCCTGTCGTCTCGGATTTCGCAAACGCGGTTTAGTGAAATTGGGCCGAGATGTGAAGGCCTGTGAATACGAGGACGTCCACGTGATGTGGGAGATGCTGAAGAGAAACGAAACGGATCAACTAATTGGATCGTCAGAAAGGCGCCAGAAAAGGAAATCGCTATGGAATATATTTTGGTGGGCTCGATCAGCTCCATGCCTCGGCAAAATCTGA

Coding sequence (CDS)

ATGGAATGGTGGATCAAGATGAGCGCTCCGTTGAGAAGTTTTACCTTCAGAGTCGCCTGTCGTCTCGGATTTCGCAAACGCGGTTTAGTGAAATTGGGCCGAGATGTGAAGGCCTGTGAATACGAGGACGTCCACGTGATGTGGGAGATGCTGAAGAGAAACGAAACGGATCAACTAATTGGATCGTCAGAAAGGCGCCAGAAAAGGAAATCGCTATGGAATATATTTTGGTGGGCTCGATCAGCTCCATGCCTCGGCAAAATCTGA

Protein sequence

MEWWIKMSAPLRSFTFRVACRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLIGSSERRQKRKSLWNIFWWARSAPCLGKI*
Homology
[Close]
BLAST of Cucsa.352690 vs. TrEMBL
Match: A0A0A0L522_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G642370 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 7.9e-46
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MEWWIKMSAPLRSFTFRVACRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60
          MEWWIKMSAPLRSFTFRVACRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI
Sbjct: 1  MEWWIKMSAPLRSFTFRVACRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60

Query: 61 GSSERRQKRKSLWNIFWWARSAPCLGKI 89
          GSSERRQKRKSLWNIFWWARSAPCLGKI
Sbjct: 61 GSSERRQKRKSLWNIFWWARSAPCLGKI 88

[Close]
BLAST of Cucsa.352690 vs. TrEMBL
Match: B9R721_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1587890 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.3e-18
Identity = 44/87 (50.57%), Postives = 57/87 (65.52%), Query Frame = 1 

Query: 1  MEWWIKMSAPLRSFTFRVACRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60
          MEWW K+  P+R     VA R+G RKRGL+KL  DV+ACEYEDV +MWEML+R ET+   
Sbjct: 1  MEWWDKVMHPVRRVWKGVALRIGIRKRGLLKLRHDVRACEYEDVRIMWEMLRRTETESAR 60

Query: 61 GSSERRQKRKSLWNIFWWARSAPCLGK 88
           S   + K++  W  F WAR +P  G+
Sbjct: 61 QSQPVKSKKRCFWKCFSWARCSPYFGR 87

[Close]
BLAST of Cucsa.352690 vs. TrEMBL
Match: A0A059BJK4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00117 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.9e-18
Identity = 47/85 (55.29%), Postives = 57/85 (67.06%), Query Frame = 1 

Query: 1  MEWWIKMSAPLRSFTFRVACRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60
          M  W +   PL++    VA RLG RK G +KL  DV+ CEY+DVHVMWEML+RNE +  I
Sbjct: 1  MRLWGRFKHPLKNVWLGVAARLGIRKSGHLKLQHDVRRCEYDDVHVMWEMLERNERE--I 60

Query: 61 GSSERRQKRKSLWNIFWWARSAPCL 86
            S RR K +S W+IF WAR APCL
Sbjct: 61 SQSSRRIKERSFWSIFGWARCAPCL 83

[Close]
BLAST of Cucsa.352690 vs. TrEMBL
Match: A0A061FFT5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_034727 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-17
Identity = 48/85 (56.47%), Postives = 62/85 (72.94%), Query Frame = 1 

Query: 1   MEWWIKMSAPLRSFTFRVACRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60
           M ++ +M+ P+R     VA RLG RK GL+KL +DV++CEYEDVHVMWEML+RNET+  +
Sbjct: 88  MHFFDRMTIPMRRVWTGVATRLGVRKSGLLKLRKDVRSCEYEDVHVMWEMLRRNETE--V 147

Query: 61  GSSERRQKRKSLWNIFWWARSAPCL 86
           G S RR K++ L N F WAR AP L
Sbjct: 148 GRSPRRCKKRPLSNCFEWARRAPFL 170

[Close]
BLAST of Cucsa.352690 vs. TrEMBL
Match: A0A0B2RLV9_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_033358 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.9e-17
Identity = 45/87 (51.72%), Postives = 57/87 (65.52%), Query Frame = 1 

Query: 1  MEWWIKMSAPLRSFTFRVACRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60
          +EWW  M  P+R   F VA RLG RK GL+KL  DV+ACEYED+ VMWE+L RNE++   
Sbjct: 11 VEWWQNMMFPVRRVWFVVAKRLGIRKNGLLKLSNDVRACEYEDIQVMWEILNRNESEFGH 70

Query: 61 GSSERR--QKRKSLWNIFWWARSAPCL 86
           SS R+   K+   W +  WAR APC+
Sbjct: 71 SSSTRKGNNKKGHCWKLLRWARCAPCM 97

[Close]
BLAST of Cucsa.352690 vs. TAIR10
Match: AT5G43150.1 (AT5G43150.1 unknown protein)

HSP 1 Score: 73.6 bits (179), Expect = 7.1e-14
Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = 1 

Query: 2  EWWIKMSAPLRSFTFRVACRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLIG 61
          EWW  M+ P R    R   R+GFR  GL++L  DV +CEYED+H+MW +L +NE    + 
Sbjct: 8  EWWNTMAFPTRRIWNRFTVRVGFRHSGLLRLEHDVSSCEYEDIHIMWNLLHKNEDLTRVP 67

Query: 62 SSERRQKRKS-LWNI 76
            +++Q+RK   WN+
Sbjct: 68 IQQQQQQRKKPCWNL 82

[Close]
BLAST of Cucsa.352690 vs. NCBI nr
Match: gi|700200098|gb|KGN55256.1| (hypothetical protein Csa_4G642370 [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 1.1e-45
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MEWWIKMSAPLRSFTFRVACRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60
          MEWWIKMSAPLRSFTFRVACRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI
Sbjct: 1  MEWWIKMSAPLRSFTFRVACRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60

Query: 61 GSSERRQKRKSLWNIFWWARSAPCLGKI 89
          GSSERRQKRKSLWNIFWWARSAPCLGKI
Sbjct: 61 GSSERRQKRKSLWNIFWWARSAPCLGKI 88

[Close]
BLAST of Cucsa.352690 vs. NCBI nr
Match: gi|659103497|ref|XP_008452629.1| (PREDICTED: uncharacterized protein LOC103493592 [Cucumis melo])

HSP 1 Score: 176.4 bits (446), Expect = 2.2e-41
Identity = 79/88 (89.77%), Postives = 86/88 (97.73%), Query Frame = 1 

Query: 1  MEWWIKMSAPLRSFTFRVACRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60
          MEWWIK+S PLRSFTFRVA RLGFRKRGL+KLG+DVKACEYEDVHVMWEMLKRNETDQLI
Sbjct: 1  MEWWIKISTPLRSFTFRVASRLGFRKRGLLKLGQDVKACEYEDVHVMWEMLKRNETDQLI 60

Query: 61 GSSERRQKRKSLWNIFWWARSAPCLGKI 89
          GSSERR+KR+SLWNIFWWARSAPC+G+I
Sbjct: 61 GSSERRRKRRSLWNIFWWARSAPCIGRI 88

[Close]
BLAST of Cucsa.352690 vs. NCBI nr
Match: gi|720068364|ref|XP_010277086.1| (PREDICTED: uncharacterized protein LOC104611641 [Nelumbo nucifera])

HSP 1 Score: 101.3 bits (251), Expect = 9.0e-19
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 1 

Query: 1  MEWWIKMSAPLRSFTFRVACRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60
          MEWW K++ PLR     VA RLG RK GL+KL  DV+ CEYEDV VMWEML RNE+ ++ 
Sbjct: 1  MEWWDKVTFPLRKVWIGVATRLGIRKSGLLKLRHDVRRCEYEDVRVMWEMLNRNESSEIS 60

Query: 61 GSSERRQKRKSLWNIFWWARSAPCL 86
           S  ++++++ LW I  WAR AP +
Sbjct: 61 RSPSKKRRKRPLWKIVAWARHAPSM 85

[Close]
BLAST of Cucsa.352690 vs. NCBI nr
Match: gi|255538098|ref|XP_002510114.1| (PREDICTED: uncharacterized protein LOC8288509 [Ricinus communis])

HSP 1 Score: 98.2 bits (243), Expect = 7.6e-18
Identity = 44/87 (50.57%), Postives = 57/87 (65.52%), Query Frame = 1 

Query: 1  MEWWIKMSAPLRSFTFRVACRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60
          MEWW K+  P+R     VA R+G RKRGL+KL  DV+ACEYEDV +MWEML+R ET+   
Sbjct: 1  MEWWDKVMHPVRRVWKGVALRIGIRKRGLLKLRHDVRACEYEDVRIMWEMLRRTETESAR 60

Query: 61 GSSERRQKRKSLWNIFWWARSAPCLGK 88
           S   + K++  W  F WAR +P  G+
Sbjct: 61 QSQPVKSKKRCFWKCFSWARCSPYFGR 87

[Close]
BLAST of Cucsa.352690 vs. NCBI nr
Match: gi|702360925|ref|XP_010059848.1| (PREDICTED: uncharacterized protein LOC104447820 [Eucalyptus grandis])

HSP 1 Score: 97.8 bits (242), Expect = 1.0e-17
Identity = 47/85 (55.29%), Postives = 57/85 (67.06%), Query Frame = 1 

Query: 1  MEWWIKMSAPLRSFTFRVACRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60
          M  W +   PL++    VA RLG RK G +KL  DV+ CEY+DVHVMWEML+RNE +  I
Sbjct: 1  MRLWGRFKHPLKNVWLGVAARLGIRKSGHLKLQHDVRRCEYDDVHVMWEMLERNERE--I 60

Query: 61 GSSERRQKRKSLWNIFWWARSAPCL 86
            S RR K +S W+IF WAR APCL
Sbjct: 61 SQSSRRIKERSFWSIFGWARCAPCL 83

The following BLAST results are available for this feature:
BLAST of Cucsa.352690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L522_CUCSA7.9e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G642370 PE=4 SV=1[more]
B9R721_RICCO5.3e-1850.57Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1587890 PE=4 SV=1[more]
A0A059BJK4_EUCGR6.9e-1855.29Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00117 PE=4 SV=1[more]
A0A061FFT5_THECC2.6e-1756.47Uncharacterized protein OS=Theobroma cacao GN=TCM_034727 PE=4 SV=1[more]
A0A0B2RLV9_GLYSO5.9e-1751.72Uncharacterized protein OS=Glycine soja GN=glysoja_033358 PE=4 SV=1[more]
BLAST of Cucsa.352690 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G43150.17.1e-1442.67 unknown protein[more]
BLAST of Cucsa.352690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200098|gb|KGN55256.1|1.1e-45100.00hypothetical protein Csa_4G642370 [Cucumis sativus][more]
gi|659103497|ref|XP_008452629.1|2.2e-4189.77PREDICTED: uncharacterized protein LOC103493592 [Cucumis melo][more]
gi|720068364|ref|XP_010277086.1|9.0e-1952.94PREDICTED: uncharacterized protein LOC104611641 [Nelumbo nucifera][more]
gi|255538098|ref|XP_002510114.1|7.6e-1850.57PREDICTED: uncharacterized protein LOC8288509 [Ricinus communis][more]
gi|702360925|ref|XP_010059848.1|1.0e-1755.29PREDICTED: uncharacterized protein LOC104447820 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.352690.1Cucsa.352690.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33181FAMILY NOT NAMEDcoord: 1..86
score: 1.5
NoneNo IPR availablePANTHERPTHR33181:SF6SUBFAMILY NOT NAMEDcoord: 1..86
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.352690Cla020613Watermelon (97103) v1cgywmB631
Cucsa.352690Csa4G642370Cucumber (Chinese Long) v2cgycuB494
Cucsa.352690CSPI04G24670Wild cucumber (PI 183967)cgycpiB521
Cucsa.352690CmaCh09G002780Cucurbita maxima (Rimu)cgycmaB0960
Cucsa.352690CmoCh01G018560Cucurbita moschata (Rifu)cgycmoB0967
Cucsa.352690Lsi04G014980Bottle gourd (USVL1VR-Ls)cgylsiB570
Cucsa.352690MELO3C032377.2Melon (DHL92) v3.6.1cgymedB571
Cucsa.352690Cla97C05G102190Watermelon (97103) v2cgywmbB602
Cucsa.352690Bhi09G002675Wax gourdcgywgoB706
Cucsa.352690Carg21787Silver-seed gourdcarcgyB0378
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.352690Cucurbita pepo (Zucchini)cgycpeB0921
Cucsa.352690Cucurbita pepo (Zucchini)cgycpeB0919
Cucsa.352690Cucurbita pepo (Zucchini)cgycpeB0920
Cucsa.352690Cucurbita pepo (Zucchini)cgycpeB0923
Cucsa.352690Cucurbita pepo (Zucchini)cgycpeB0925
Cucsa.352690Bottle gourd (USVL1VR-Ls)cgylsiB568
Cucsa.352690Bottle gourd (USVL1VR-Ls)cgylsiB571
Cucsa.352690Melon (DHL92) v3.6.1cgymedB568
Cucsa.352690Melon (DHL92) v3.6.1cgymedB569
Cucsa.352690Melon (DHL92) v3.6.1cgymedB570
Cucsa.352690Silver-seed gourdcarcgyB0224
Cucsa.352690Silver-seed gourdcarcgyB0348
Cucsa.352690Silver-seed gourdcarcgyB0474
Cucsa.352690Silver-seed gourdcarcgyB0877
Cucsa.352690Cucumber (Chinese Long) v3cgycucB535
Cucsa.352690Cucumber (Chinese Long) v3cgycucB536
Cucsa.352690Cucumber (Chinese Long) v3cgycucB537
Cucsa.352690Cucumber (Chinese Long) v3cgycucB540
Cucsa.352690Watermelon (97103) v2cgywmbB600
Cucsa.352690Watermelon (97103) v2cgywmbB606
Cucsa.352690Wax gourdcgywgoB702
Cucsa.352690Cucumber (Gy14) v1cgycgyB118
Cucsa.352690Cucumber (Gy14) v1cgycgyB148
Cucsa.352690Cucurbita maxima (Rimu)cgycmaB0962
Cucsa.352690Cucurbita maxima (Rimu)cgycmaB0965
Cucsa.352690Cucurbita maxima (Rimu)cgycmaB0966
Cucsa.352690Cucurbita maxima (Rimu)cgycmaB0967
Cucsa.352690Cucurbita maxima (Rimu)cgycmaB0968
Cucsa.352690Cucurbita moschata (Rifu)cgycmoB0961
Cucsa.352690Cucurbita moschata (Rifu)cgycmoB0969
Cucsa.352690Cucurbita moschata (Rifu)cgycmoB0963
Cucsa.352690Cucurbita moschata (Rifu)cgycmoB0964
Cucsa.352690Cucurbita moschata (Rifu)cgycmoB0968
Cucsa.352690Cucurbita moschata (Rifu)cgycmoB0970
Cucsa.352690Wild cucumber (PI 183967)cgycpiB520
Cucsa.352690Wild cucumber (PI 183967)cgycpiB522
Cucsa.352690Wild cucumber (PI 183967)cgycpiB525
Cucsa.352690Cucumber (Chinese Long) v2cgycuB493
Cucsa.352690Cucumber (Chinese Long) v2cgycuB495
Cucsa.352690Cucumber (Chinese Long) v2cgycuB498
Cucsa.352690Melon (DHL92) v3.5.1cgymeB567
Cucsa.352690Melon (DHL92) v3.5.1cgymeB568
Cucsa.352690Melon (DHL92) v3.5.1cgymeB569
Cucsa.352690Melon (DHL92) v3.5.1cgymeB570
Cucsa.352690Watermelon (Charleston Gray)cgywcgB599
Cucsa.352690Watermelon (Charleston Gray)cgywcgB603
Cucsa.352690Watermelon (97103) v1cgywmB630