Cucsa.341710 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.341710
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Small nuclear ribonucleoprotein sm d1, putative
Location	scaffold03356 : 4110771 .. 4114424 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCAGTGTTGGGCCTTTTCTTCATTTCCTTCTTCAAGGAAAGAAGGGCAGAAAGAAAAGAAAGAAATAGGGACGAAACCGCGGCAATCTCCCAATTTCCTCTCCCCCGCTTCGTTGTTTGAAACCCTACATTCTTCCTTTCCTCTCCAATCATGAAGCTTGTTAGGTATCTTCTTCTCTTTTTCTATTTTTGCCCTCTTTTTCTTCTCGATCTACATCCAAATGCCGTTTTTCATTTCTGAAATCTTCGTTTTCATACAGGTTTTTGATGAAGCTCAACAATGAGACTGTCTCTATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACCATCACAGGTCTTTCTGCTTCTCTTTCTTTAAATCTTGTTAAACCCTAGATTTACCAACTTTGCGGCTCAGGGTTCTTTAACTTCCAACTTCTGTTCTATTTTCTTCTTTGAACTTCACTGCGTTGGAATTTGTACAACATTTCAGTATGTTCACCAGTGTACGACTCTCACTACTATTGCTTTCGTCTCACTTCCATCTCCCGACCTTTGAAAGCTAACGGAAGGGTTCTTTATCCCGCTCCCATTTTTAATTTTAAAAATTAGTATTCAACTTATGAGTTGCTTACGGCAAATTAAATTCCTTGTCTTCTGGACGTTGGGAGGATGAGATGTTTTTCTCTCTATTGTTTTtATTTTTATTATTTTCATTTTCAAAATAATTTGAACTTTTGATTACTCTCTACTGATGCTGAATATGCATTCTATTTCATGATATATTTGTAGATTTAAACAAATGTTTAAAATGTCCCGTCATTTTTTCATGGAATGACTCCTACAATTCATTCTTTCCCATTTGATTTGATGGAATTGTTTTTtCAACCAAGTGAATATACTTTTTTttTTTttGAAACGGAAACAAACCAAGTGAATATACTTCTACAATTAACTTGAGGTGAGAAACCTGCACTAGAATGATGTTACTATAGTCTGATTAAGCATGAACTTCTGCTGAACCCCAGCATTTTTGGACTCGGTAGCCCATATGCCATTCTTTGGTTAATTGTATGTGTGTTTTTAAATTTGTTTTGCATAAGAGACTATGCAATAACTGAAAGAGAAGCAACTTGTAACTGAACTGTGCCCAGTGGTGGAAACATAGTCAATTGAGCAGTCGCAAATTATATGCGCCTTTGTCCTCCTACACTGCCTCTAACTACATGAACTATTTTTAACCTTCCCTGGAATAGCAATAACTTAGTTTTGATTAATCTTCTTCTGAGTTCCATTAGTTTTGGGTTCTGTAGACCATTAGCCATTCTTACATGAATTTTtACCCTTTTTtATCTTCTGATGAGAGACTATGTTACAAGTGAAGCAAAAAGTCTAACCTAGGTTTAATCTTGGGGGGAGAAAACCCTAGGAGCTATAAAAAaAaGAGCCTTCTGATAAAAGTTAAATCATATTCATTAGTAGACTGTAACTACAACAGATTATCTTCTATTTGAAAAACCATCGTAAAAATGTGTATGGTACACTATTAAAAATAGAATCTAAGATAGATACTTTTTCTCTCAAAATATTTATAGAAGTAGTAGTGCAGATTTTATTTTACATCCAACTCATCAGGCTGTGAATGTTTTGAAAAATAATTGTAACCCAAGCTAGTTAGGCAAAAGATAAACCAGTTTGTTGAAAATGAAAGACCATCCTCTATAGACAAAAGGATAGTGGAGATAAAGGTAATTTTGGGATTACCCATTGGAATAATAGAGGAACAAACCAGGGGAGACAACCCAGTTTGGGAATTTTTTtCTAGATTCTCTTGGGGGGTTGAGGTTTCTATTAGTAGCCAACCTCACAAACATGTTAACCTTCCTAGGGGTGTCAAACATCCAAACTGATTTGACTTTACAAAGGCGTTTTCAGCTTTAGCAAGGTCTGAGAGAGTTTAGTGAAGGTGATCTTAGAGGACAAACAATTTAATGAATCAATGGATTCTACTTCTATGTCTTGGTCAGCTTCTAATTGAAAGGTATCGAACTTTCCTATAAAGTCAATCCAACTTTCCAATTTCCCTGTGAAAAGAGCCAACAAGCATTCCACAGTTATCCCCCAAGACTACCTATGGTTTTGGTTTCATTGTCGTTGTTTCTGGTTCTAGATGATCACTTTTCACAACTGTTTAAGAAGTAGCACATCATTTCTCTACTTACAAAAAGAGCTGACCAATGGAAGGGAAGTCCGACTCTATTTTAATGGGTGACTTACTGATTTGGTGAATTATGACTAGTTTGCATTTTGCTGTTGACAACCCCCTATACATCTTCCACTTAATGTATTTTTCTACGCTGCTGGTACTGAAACTAGTTATTTACCGGCAGAGTTTTTTTTtCACAAGGAGTTGTAACAGAAGAGTTGAGACTCTTGTCATAACTTATGACTCATAATTTTAGTTGGTTACCTCTTTTGTTGGAGGATTTCAGTTGAGATTATACGCAATGTTTTAAAAGGCTAAAGGCAGCCTCTTCCAGCATAGCCCCAAGGTGAGGTGTTATGAGTTGTAAGTCTCTTTGGTTAAAAATATTTTACCAAATATTGTTAGGCAACACTTAATAATCATGTAAAAGTTAATAAAAAGAAAAAaGGAAAATCACTCGTCCCAATTTCCACCTAGACAGAAGTTCTAAAATGATATCTTTAACTTTACTAATATTATTTGATTGACTTCTCCTAGAAATATTAGATTGCGACAAACTAATATTATTCAATAAAATTATTACAAAGAGGTGTAAGTCTCTATCTATGCAATATGCTTGATGACCTACATTGCACTTTGCGTTGTGAAATCTTGTTTTCGACTATGATATGTTAATCAATGATTTGTTTTAAAAAAATTCAATGACATTTCATGAACTTAAAGTAGAAGTACGCACTCTTTTCTCTTAAAACCTAAGTATTGGTCAAGGTTAGAAGTCGCTGATGGGTTGATTTTGAGTGTTTTTCTTGTATTACTTAGGTGTGGATATCAGCATGAATACGCATTTGAAGGCTGTGAAGCTAACTCTAAAGGGAAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGAGGTAACAACATCAGATATTATATCCTACCTGACAGCTTGAATCTTGAAACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGGTTTGTGTTCTTGCATTCTGGCCTGTACTTTATGGTCATTTTCTGCTGCAAGTCCAATTGTTTATACTGAATCATATCATTTGCTACTCATTATCAAATGTATTGCTTATGCATTTCTACACTATGCTCCAACTACAGGGAGGCCTTTGGGGCGGGGACGAGGGCGCGGCCGTGGACGTGGTCGTGGACGTGGACGCTAGATTTGATGCAGTTGTTTCAATTTTTGAGACCTGTAGTGTAAACACTTGCATTGTAGGGAAAGATTATGAATTTTGGGACACGAAAAAGTGGTATTGCAATTCACTGTTCAATCTCGTATGTAGTTTATTACAATGCTATTCGGTTGCTTTTCATATGATAGATGTAGCCTTGCTATGTTTTCTGGTGCTTGGGATCTGTTAATGATTTACTCTAATATTGTCACAATGATAAAACGAGTATGTCTCTAGATTGG

mRNA sequence

TCTCAGTGTTGGGCCTTTTCTTCATTTCCTTCTTCAAGGAAAGAAGGGCAGAAAGAAAAGAAAGAAATAGGGACGAAACCGCGGCAATCTCCCAATTTCCTCTCCCCCGCTTCGTTGTTTGAAACCCTACATTCTTCCTTTCCTCTCCAATCATGAAGCTTGTTAGGTTTTTGATGAAGCTCAACAATGAGACTGTCTCTATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACCATCACAGGTGTGGATATCAGCATGAATACGCATTTGAAGGCTGTGAAGCTAACTCTAAAGGGAAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGAGGTAACAACATCAGATATTATATCCTACCTGACAGCTTGAATCTTGAAACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGGGAGGCCTTTGGGGCGGGGACGAGGGCGCGGCCGTGGACGTGGTCGTGGACGTGGACGCTAGATTTGATGCAGTTGTTTCAATTTTTGAGACCTGTAGTGTAAACACTTGCATTGTAGGGAAAGATTATGAATTTTGGGACACGAAAAAGTGGTATTGCAATTCACTGTTCAATCTCGTATGTAGTTTATTACAATGCTATTCGGTTGCTTTTCATATGATAGATGTAGCCTTGCTATGTTTTCTGGTGCTTGGGATCTGTTAATGATTTACTCTAATATTGTCACAATGATAAAACGAGTATGTCTCTAGATTGG

Coding sequence (CDS)

ATGAAGCTTGTTAGGTTTTTGATGAAGCTCAACAATGAGACTGTCTCTATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACCATCACAGGTGTGGATATCAGCATGAATACGCATTTGAAGGCTGTGAAGCTAACTCTAAAGGGAAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGAGGTAACAACATCAGATATTATATCCTACCTGACAGCTTGAATCTTGAAACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGGGAGGCCTTTGGGGCGGGGACGAGGGCGCGGCCGTGGACGTGGTCGTGGACGTGGACGCTAG

Protein sequence

MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR*

Homology

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BLAST of Cucsa.341710 vs. Swiss-Prot
Match: SMD1_MACFA (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.5e-42
Identity = 86/114 (75.44%), Postives = 99/114 (86.84%), Query Frame = 1


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 115
           RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Cucsa.341710 vs. Swiss-Prot
Match: SMD1_HUMAN (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1 PE=1 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.5e-42
Identity = 86/114 (75.44%), Postives = 99/114 (86.84%), Query Frame = 1


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 115
           RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Cucsa.341710 vs. Swiss-Prot
Match: SMD1_BOVIN (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.5e-42
Identity = 86/114 (75.44%), Postives = 99/114 (86.84%), Query Frame = 1


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 115
           RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Cucsa.341710 vs. Swiss-Prot
Match: SMD1_MOUSE (Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1 PE=1 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.5e-42
Identity = 86/114 (75.44%), Postives = 99/114 (86.84%), Query Frame = 1


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 115
           RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Cucsa.341710 vs. Swiss-Prot
Match: SMD1_SCHPO (Small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=smd1 PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 9.2e-40
Identity = 82/115 (71.30%), Postives = 96/115 (83.48%), Query Frame = 1


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKL NETVSIELKNGT+VHGTIT VD+ MNTHLKAVK+T+KG+ PV ++ LS+
Sbjct: 1   MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSI 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRG-RGRGRGRGR 115
           RGNNIRYYILPDSL L+TLL++++ + K KK    R  GRGRGRG RGRGRG  R
Sbjct: 61  RGNNIRYYILPDSLPLDTLLIDDSTKPKQKKKEVVRGRGRGRGRGTRGRGRGASR 115

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BLAST of Cucsa.341710 vs. TrEMBL
Match: A0A0A0LD16_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851900 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.2e-57
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Cucsa.341710 vs. TrEMBL
Match: U5DA74_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00061p00127560 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 7.5e-57
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 1


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Cucsa.341710 vs. TrEMBL
Match: F6I591_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g01330 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 9.8e-57
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 1


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDS+NLETLLVEETPRVKPKKPTAGRP+GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSINLETLLVEETPRVKPKKPTAGRPMGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Cucsa.341710 vs. TrEMBL
Match: B9S445_RICCO (Small nuclear ribonucleoprotein sm d1, putative OS=Ricinus communis GN=RCOM_0558720 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 9.8e-57
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 1


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLK VKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Cucsa.341710 vs. TrEMBL
Match: A0A124SCN9_CYNCS (Like-Sm (LSM) domain-containing protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_003535 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.3e-56
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 1


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNPVT+DHLSV
Sbjct: 35  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 94

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRP+GRGRGRGRGRGRGRGR
Sbjct: 95  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPMGRGRGRGRGRGRGRGR 148

[Close]

BLAST of Cucsa.341710 vs. TAIR10
Match: AT3G07590.1 (AT3G07590.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 215.3 bits (547), Expect = 2.0e-56
Identity = 103/114 (90.35%), Postives = 111/114 (97.37%), Query Frame = 1


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG+ +GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Cucsa.341710 vs. TAIR10
Match: AT4G02840.2 (AT4G02840.2 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 209.1 bits (531), Expect = 1.4e-54
Identity = 106/124 (85.48%), Postives = 112/124 (90.32%), Query Frame = 1


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTIT----------GVDISMNTHLKAVKLTLKGK 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTIT          GVD+SMNTHLKAVKLTLKGK
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLKGK 60

Query: 61  NPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-PLGRGRGRGRGRG 114
           NPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG+ P GRGRGRGRGRG
Sbjct: 61  NPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRG 120

[Close]

BLAST of Cucsa.341710 vs. TAIR10
Match: AT5G27720.1 (AT5G27720.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 57.0 bits (136), Expect = 8.9e-09
Identity = 41/101 (40.59%), Postives = 52/101 (51.49%), Query Frame = 1


Query: 17  IELKNGTVVHGTITGVDISMNTHLKAVKLTLK-GKNPVTMDHLSVRGNNIRYYILPDSLN 76
           +ELKNG   +G +   D  MN HL+ V  T K G     M    +RGN I+Y  +PD + 
Sbjct: 17  VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVI 76

Query: 77  LETLLVEETPRVKPKKPTAGRPLGRGRGRG--RGRGRGRGR 115
            +  + EE  R   K P     +GRGRGRG   G  RGRGR
Sbjct: 77  DK--VQEEKTRTDRKPPG----VGRGRGRGVDDGGARGRGR 111

[Close]

BLAST of Cucsa.341710 vs. NCBI nr
Match: gi|449464778|ref|XP_004150106.1| (PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cucumis sativus])

HSP 1 Score: 230.3 bits (586), Expect = 1.7e-57
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Cucsa.341710 vs. NCBI nr
Match: gi|823148065|ref|XP_012473940.1| (PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Gossypium raimondii])

HSP 1 Score: 227.6 bits (579), Expect = 1.1e-56
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 1


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG+PLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Cucsa.341710 vs. NCBI nr
Match: gi|586775950|ref|XP_006857628.1| (PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda])

HSP 1 Score: 227.6 bits (579), Expect = 1.1e-56
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 1


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Cucsa.341710 vs. NCBI nr
Match: gi|698486337|ref|XP_009789901.1| (PREDICTED: small nuclear ribonucleoprotein Sm D1 [Nicotiana sylvestris])

HSP 1 Score: 227.6 bits (579), Expect = 1.1e-56
Identity = 111/114 (97.37%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG+PLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Cucsa.341710 vs. NCBI nr
Match: gi|225462054|ref|XP_002275736.1| (PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Vitis vinifera])

HSP 1 Score: 227.3 bits (578), Expect = 1.4e-56
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 1


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDS+NLETLLVEETPRVKPKKPTAGRP+GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSINLETLLVEETPRVKPKKPTAGRPMGRGRGRGRGRGRGRGR 114

The following BLAST results are available for this feature:

BLAST of Cucsa.341710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SMD1_MACFA	1.5e-42	75.44	Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis GN=SNRPD1 PE=3 SV=1	[more]
SMD1_HUMAN	1.5e-42	75.44	Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1 PE=1 SV=1	[more]
SMD1_BOVIN	1.5e-42	75.44	Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus GN=SNRPD1 PE=3 SV=1	[more]
SMD1_MOUSE	1.5e-42	75.44	Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1 PE=1 SV=1	[more]
SMD1_SCHPO	9.2e-40	71.30	Small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces pombe (strain 972 /...	[more]

BLAST of Cucsa.341710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD16_CUCSA	1.2e-57	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851900 PE=4 SV=1	[more]
U5DA74_AMBTC	7.5e-57	98.25	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00061p00127560 PE=4 SV=...	[more]
F6I591_VITVI	9.8e-57	97.37	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g01330 PE=4 SV=...	[more]
B9S445_RICCO	9.8e-57	97.37	Small nuclear ribonucleoprotein sm d1, putative OS=Ricinus communis GN=RCOM_0558...	[more]
A0A124SCN9_CYNCS	1.3e-56	97.37	Like-Sm (LSM) domain-containing protein (Fragment) OS=Cynara cardunculus var. sc...	[more]

BLAST of Cucsa.341710 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07590.1	2.0e-56	90.35	Small nuclear ribonucleoprotein family protein	[more]
AT4G02840.2	1.4e-54	85.48	Small nuclear ribonucleoprotein family protein	[more]
AT5G27720.1	8.9e-09	40.59	Small nuclear ribonucleoprotein family protein	[more]

BLAST of Cucsa.341710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464778\|ref\|XP_004150106.1\|	1.7e-57	100.00	PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cucumis sativus]	[more]
gi\|823148065\|ref\|XP_012473940.1\|	1.1e-56	98.25	PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Gossypium raimondii]	[more]
gi\|586775950\|ref\|XP_006857628.1\|	1.1e-56	98.25	PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]	[more]
gi\|698486337\|ref\|XP_009789901.1\|	1.1e-56	97.37	PREDICTED: small nuclear ribonucleoprotein Sm D1 [Nicotiana sylvestris]	[more]
gi\|225462054\|ref\|XP_002275736.1\|	1.4e-56	97.37	PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf
IPR027141	LSm4/Sm_D1/D3

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.341710.1	Cucsa.341710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 5..69 score: 3.6
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 5..70 score: 1.1
IPR010920	LSM domain	unknown	SSF50182	Sm-like ribonucleoproteins	coord: 4..113 score: 1.64
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 1..114 score: 4.0
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 1..81 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.341710	Cla023415	Watermelon (97103) v1	cgywmB619
Cucsa.341710	Csa3G851900	Cucumber (Chinese Long) v2	cgycuB478
Cucsa.341710	MELO3C018220	Melon (DHL92) v3.5.1	cgymeB559
Cucsa.341710	CSPI03G42070	Wild cucumber (PI 183967)	cgycpiB504
Cucsa.341710	Lsi04G012930	Bottle gourd (USVL1VR-Ls)	cgylsiB553
Cucsa.341710	MELO3C018220.2	Melon (DHL92) v3.6.1	cgymedB560
Cucsa.341710	CsaV3_3G044470	Cucumber (Chinese Long) v3	cgycucB523
Cucsa.341710	Cla97C11G224500	Watermelon (97103) v2	cgywmbB583
Cucsa.341710	Bhi09G001705	Wax gourd	cgywgoB689

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.341710	Cucurbita moschata (Rifu)	cgycmoB0921
Cucsa.341710	Cucurbita moschata (Rifu)	cgycmoB0936
Cucsa.341710	Watermelon (Charleston Gray)	cgywcgB580
Cucsa.341710	Cucurbita pepo (Zucchini)	cgycpeB0887
Cucsa.341710	Cucurbita pepo (Zucchini)	cgycpeB0897
Cucsa.341710	Melon (DHL92) v3.6.1	cgymedB553
Cucsa.341710	Silver-seed gourd	carcgyB0367
Cucsa.341710	Silver-seed gourd	carcgyB1025
Cucsa.341710	Cucumber (Chinese Long) v3	cgycucB519
Cucsa.341710	Cucurbita maxima (Rimu)	cgycmaB0921
Cucsa.341710	Cucurbita maxima (Rimu)	cgycmaB0936