Cucsa.341320 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.341320
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description60S ribosomal protein L28, putative
Locationscaffold03356 : 3726513 .. 3728417 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAAAGAGTGGAAACTCCCACTTCATTTTGCTGCACGCCCCATTTTACCTATCGGAGCATTGGTCAGGCAAAACCCTAACGCAAATCAGGTTTTTCGATTTCTCTCAACGATTACGTTTGTTTCTTTGAAATTGTTTGTGTTTCCGATGTAATACTATGCGTATGTATGATTTTACTCAAGCTAGACTCTCTTCTGAGATCTCTTTTTTCGTCTATTTGTATCGTTGTTGCAGTGCCAGAAGAAGACGATGGCGGCGGTTCCAGGACAACTGATTTGGGAGATTGTGAAGAGGAACAACTCTTTTTTGGTGAAGGAGTTTGGAAGGGGAACAGCTGGTGTTCAGTTCAGCAAAGAGGCCAACAATTTATACAATCTGAACTCCTACAAGCATTCTGGTTAGTCATCTTAAATATTCTGATTAACGAGGCGTTCTTTTCATTTTAATTGCAATGCTAGTGGATTAAGTTTGGAAGATTTCGTTTGAACGTCTATACAACTTAGAGACGGGATCGTTAGTATATTATGTCGTTGTTTGAAGTTTGTGTATTGTTTAAGTAGAGTGTAGATGAAATTGAAATATTAGAGTGTTTGTTTGCTTTGATTCTATGAAGTTTTTCAAATGACCAAACCGCTGCTATGTTATTGTTTGAATTCCTGATGTTCTGCTCAAGTGGAGGTTATCTAGATTAGATGTGTGAGGGGCCAGCGAACTGATATATAGTTGTATACGATGTTGTAAATCGTTTGAAACTTCGTTTGTGCAGCATCTGGGAGGGTCGTAGAATAGAGATTGCATGGTCATTGTGCTTGTCCAATTAATGTTTATGCTATCGGTTCTTTTATTCTTAGATTAGATGTGTTCAAGAAATTATTTAGTTATTGGGTTACATGTTCGACAATTGATTCTGCGGTTTTCTTGAATACTTCCAACCGTTGCTAATCTCTTTGTACTAGAAAACATATTTGAGTATTTAATAATTTTTTGTCCTTGTTGAACAGTTCGGTTTATTGTCTAATATCTATTCGAATTTCATTGTTTTAGAACTTTATTAATAGTGGTGAGAGGAGTTTAAGGGGATTTTTTCTTTTCTTCATTATTTTTATTGTATGTTTTGGATTGAAGATAATATTGCCAATAGTCGGTGCAGTTTATGCTTAGGGTTCATTAAGATTCTTGTGTTTTAGGTTTGGCCAACAAGAAGACTGTCACAATTCAACCTGGAGGCAAAGATCAATCCATTTTGCTTGCAACAACCAAGAGCAAGAAACAGAACAAACCTTCTTCATCGCTTCATAAATCTTTGATGAAGAAAGAGTTCCGTCGGATGGCAAAAGCTGTAACAAACCAGGTATAAACAGCAGACCTTAATTATCTGTTGAGTATGACTTGTTCCTAATTAATACCATGGAAATAGTTGCATTAACTCACTCACCACACGAATGATATCAGGTGGCAGATAACTACTACAGGCCAGATCTGAAGAAGGCTGCCTTGGCAAGATTGAGTGCTGTAAACAGGAGCCTGAAGGTTGCCAAGTCTGGTGTTAAGAAGAGGAACAGGCAAGCTTTGAAATCAAAGAAGTGAGATTTAGGAGAATGATAAATGAGATTTTGCGTTTGCCATTGTGTTTTATGTTGGGATGTCAACCTTTTTAGTTCAGTTTGGAATCTGAAGAATAGTCTTGCTATAGATGTTTTTTTTTGCTGTGTTTTGCATTATTATTATATGATTGTTTTCTTGATGTGAAGAACTTTTGGAAGGCAATCTTATGACTTTGTTTTGGTATTGTGTTATTTTAGTTTGTAGTTGAAAATTACTAAGATATTTCATGATGCTTTGCGAAGGCTACTTAATCTAGAAAATGAATAATAGCAACCTTACCTTTTGGTGATTTATGTTAGA

mRNA sequence

TATAAAGAGTGGAAACTCCCACTTCATTTTGCTGCACGCCCCATTTTACCTATCGGAGCATTGGTCAGGCAAAACCCTAACGCAAATCAGTGCCAGAAGAAGACGATGGCGGCGGTTCCAGGACAACTGATTTGGGAGATTGTGAAGAGGAACAACTCTTTTTTGGTGAAGGAGTTTGGAAGGGGAACAGCTGGTGTTCAGTTCAGCAAAGAGGCCAACAATTTATACAATCTGAACTCCTACAAGCATTCTGGTTTGGCCAACAAGAAGACTGTCACAATTCAACCTGGAGGCAAAGATCAATCCATTTTGCTTGCAACAACCAAGAGCAAGAAACAGAACAAACCTTCTTCATCGCTTCATAAATCTTTGATGAAGAAAGAGTTCCGTCGGATGGCAAAAGCTGTAACAAACCAGGTGGCAGATAACTACTACAGGCCAGATCTGAAGAAGGCTGCCTTGGCAAGATTGAGTGCTGTAAACAGGAGCCTGAAGGTTGCCAAGTCTGGTGTTAAGAAGAGGAACAGGCAAGCTTTGAAATCAAAGAAGTGAGATTTAGGAGAATGATAAATGAGATTTTGCGTTTGCCATTGTGTTTTATGTTGGGATGTCAACCTTTTTAGTTCAGTTTGGAATCTGAAGAATAGTCTTGCTATAGATGTTTTTTTTTGCTGTGTTTTGCATTATTATTATATGATTGTTTTCTTGATGTGAAGAACTTTTGGAAGGCAATCTTATGACTTTGTTTTGGTATTGTGTTATTTTAGTTTGTAGTTGAAAATTACTAAGATATTTCATGATGCTTTGCGAAGGCTACTTAATCTAGAAAATGAATAATAGCAACCTTACCTTTTGGTGATTTATGTTAGA

Coding sequence (CDS)

ATGGCGGCGGTTCCAGGACAACTGATTTGGGAGATTGTGAAGAGGAACAACTCTTTTTTGGTGAAGGAGTTTGGAAGGGGAACAGCTGGTGTTCAGTTCAGCAAAGAGGCCAACAATTTATACAATCTGAACTCCTACAAGCATTCTGGTTTGGCCAACAAGAAGACTGTCACAATTCAACCTGGAGGCAAAGATCAATCCATTTTGCTTGCAACAACCAAGAGCAAGAAACAGAACAAACCTTCTTCATCGCTTCATAAATCTTTGATGAAGAAAGAGTTCCGTCGGATGGCAAAAGCTGTAACAAACCAGGTGGCAGATAACTACTACAGGCCAGATCTGAAGAAGGCTGCCTTGGCAAGATTGAGTGCTGTAAACAGGAGCCTGAAGGTTGCCAAGTCTGGTGTTAAGAAGAGGAACAGGCAAGCTTTGAAATCAAAGAAGTGA

Protein sequence

MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQPGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQALKSKK*
Homology
[Close]
BLAST of Cucsa.341320 vs. Swiss-Prot
Match: RL282_ARATH (60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 4.3e-58
Identity = 109/143 (76.22%), Postives = 126/143 (88.11%), Query Frame = 1 

Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVKRNN FLVK+FGRG A VQFSKE+NNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
             GKDQ ++L TTK+K+QNKP  S++KS++KKEF RM+K V NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]
BLAST of Cucsa.341320 vs. Swiss-Prot
Match: RL281_ARATH (60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=2 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 8.2e-57
Identity = 108/143 (75.52%), Postives = 126/143 (88.11%), Query Frame = 1 

Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NN FLVK+FGRG + VQFSKE NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
              KDQ+++LATTK+KKQNKP  S++KS++KKEF RM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]
BLAST of Cucsa.341320 vs. Swiss-Prot
Match: RL28_SPOFR (60S ribosomal protein L28 OS=Spodoptera frugiperda GN=RpL28 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.8e-15
Identity = 48/127 (37.80%), Postives = 68/127 (53.54%), Query Frame = 1 

Query: 8   LIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQPGGKDQS 67
           L W I++ NN+FLVK   +      FSKE NN+ NLNSY+++GL  KK V +      + 
Sbjct: 5   LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKG 64

Query: 68  ILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALARLSAVNR 127
             +   K+K  NKP+ +  +   K   RR    V   +  N+YR DL KA L R SA+ R
Sbjct: 65  FTVVYKKAKATNKPAKNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILR 124

Query: 128 SLKVAKS 135
           S +  K+
Sbjct: 125 SQRPIKA 128

[Close]
BLAST of Cucsa.341320 vs. Swiss-Prot
Match: RL28_HUMAN (60S ribosomal protein L28 OS=Homo sapiens GN=RPL28 PE=1 SV=3)

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-14
Identity = 44/139 (31.65%), Postives = 78/139 (56.12%), Query Frame = 1 

Query: 8   LIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQPGGKDQS 67
           L W +V+  +SFL+K   +      +S E NNL   NS++++GL ++KTV ++P    + 
Sbjct: 5   LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 64

Query: 68  ILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALARLSAVNR 127
           +++   +   Q KP++S  ++ + K  R    ++ + +  N YRPDL+ AA+ R SA+ R
Sbjct: 65  VVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 124

Query: 128 SLKVAKSGVKKRNRQALKS 147
           S K     VK++  +  KS
Sbjct: 125 SQKPVM--VKRKRTRPTKS 136

[Close]
BLAST of Cucsa.341320 vs. Swiss-Prot
Match: RL28_MOUSE (60S ribosomal protein L28 OS=Mus musculus GN=Rpl28 PE=1 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 2.9e-14
Identity = 44/139 (31.65%), Postives = 78/139 (56.12%), Query Frame = 1 

Query: 8   LIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQPGGKDQS 67
           L W +V+  +SFL+K   +      +S E NNL   NS++++GL ++KTV ++P    + 
Sbjct: 5   LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 64

Query: 68  ILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALARLSAVNR 127
           +++   +   Q KP++S  ++ + K  R    ++ + +  N YRPDL+ AA+ R SA+ R
Sbjct: 65  VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 124

Query: 128 SLKVAKSGVKKRNRQALKS 147
           S K     VK++  +  KS
Sbjct: 125 SQKPVV--VKRKRTRPTKS 136

[Close]
BLAST of Cucsa.341320 vs. TrEMBL
Match: A0A0A0LIG3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G849920 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 3.6e-75
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1 

Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 149
           RLSAVNRSLKVAKSGVKKRNRQALKSKK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 148

[Close]
BLAST of Cucsa.341320 vs. TrEMBL
Match: A0A0B0MP89_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_24486 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.4e-66
Identity = 128/145 (88.28%), Postives = 139/145 (95.86%), Query Frame = 1 

Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVKRNN FLVKEFGRGTAG+QFSKE+NNLYNLNSYKHSGLANKKTVT+Q
Sbjct: 443 MATVPGQLIWEIVKRNNCFLVKEFGRGTAGIQFSKESNNLYNLNSYKHSGLANKKTVTVQ 502

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQS+LLATTK+KKQNKP+S LHKS+M+KEF RMAKAV NQV DN+YRPDLKKAALA
Sbjct: 503 PGGKDQSVLLATTKTKKQNKPASVLHKSVMRKEFPRMAKAVVNQVVDNHYRPDLKKAALA 562

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALK 146
           RLSAVNRSLKVAKSGVKKRNRQA++
Sbjct: 563 RLSAVNRSLKVAKSGVKKRNRQAVR 587

[Close]
BLAST of Cucsa.341320 vs. TrEMBL
Match: A0A061GC89_THECC (Ribosomal L28e protein family isoform 2 OS=Theobroma cacao GN=TCM_028990 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 3.9e-66
Identity = 131/145 (90.34%), Postives = 137/145 (94.48%), Query Frame = 1 

Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK+NNSFLVK+FGRGTA VQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKKNNSFLVKQFGRGTASVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
            GGKDQS+LLATTK+KKQNKPSS LHKS+M+KEF RMAKAV NQVADNYYRPDL KAALA
Sbjct: 61  SGGKDQSVLLATTKTKKQNKPSSLLHKSVMRKEFPRMAKAVKNQVADNYYRPDLTKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALK 146
           RLSAVNRSLKVAKSGVKKRNRQALK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALK 145

[Close]
BLAST of Cucsa.341320 vs. TrEMBL
Match: B9MST4_GOSHI (Putative ribosomal protein L28 OS=Gossypium hirsutum GN=rpl28 PE=2 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 4.4e-65
Identity = 128/143 (89.51%), Postives = 134/143 (93.71%), Query Frame = 1 

Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWE+VKRNN FLVK+FGRGTAGV+FSKE NNLYN+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEVVKRNNCFLVKQFGRGTAGVRFSKEPNNLYNVNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           P GKDQS+LLATTKSKKQNKPSS LHKS+MKKEF RMAKAV NQV DNYYRPDL KAALA
Sbjct: 61  PAGKDQSVLLATTKSKKQNKPSSLLHKSVMKKEFPRMAKAVKNQVTDNYYRPDLTKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSAVNRSLKVAKSGVKKRNRQA
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQA 143

[Close]
BLAST of Cucsa.341320 vs. TrEMBL
Match: B9RKC5_RICCO (60S ribosomal protein L28, putative OS=Ricinus communis GN=RCOM_1048210 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 4.4e-65
Identity = 127/144 (88.19%), Postives = 137/144 (95.14%), Query Frame = 1 

Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NNSFLVKEFGRG A VQFSKE+NNLYNLNSYKHSGLANKKTV+IQ
Sbjct: 1   MATVPGQLIWEIVKTNNSFLVKEFGRGNASVQFSKESNNLYNLNSYKHSGLANKKTVSIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKD S++LATTK+KKQNKP+SSLHKS+M+KEFRRMAKAV+NQV DNYYRPDLKKAALA
Sbjct: 61  PGGKDLSVVLATTKTKKQNKPASSLHKSVMRKEFRRMAKAVSNQVGDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQAL 145
           RLSAV RSLKVAKSGVKKRNRQA+
Sbjct: 121 RLSAVQRSLKVAKSGVKKRNRQAV 144

[Close]
BLAST of Cucsa.341320 vs. TAIR10
Match: AT4G29410.1 (AT4G29410.1 Ribosomal L28e protein family)

HSP 1 Score: 225.3 bits (573), Expect = 2.4e-59
Identity = 109/143 (76.22%), Postives = 126/143 (88.11%), Query Frame = 1 

Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVKRNN FLVK+FGRG A VQFSKE+NNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
             GKDQ ++L TTK+K+QNKP  S++KS++KKEF RM+K V NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]
BLAST of Cucsa.341320 vs. TAIR10
Match: AT2G19730.1 (AT2G19730.1 Ribosomal L28e protein family)

HSP 1 Score: 221.1 bits (562), Expect = 4.6e-58
Identity = 108/143 (75.52%), Postives = 126/143 (88.11%), Query Frame = 1 

Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NN FLVK+FGRG + VQFSKE NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
              KDQ+++LATTK+KKQNKP  S++KS++KKEF RM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]
BLAST of Cucsa.341320 vs. NCBI nr
Match: gi|449458189|ref|XP_004146830.1| (PREDICTED: 60S ribosomal protein L28-2 [Cucumis sativus])

HSP 1 Score: 288.9 bits (738), Expect = 5.1e-75
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1 

Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 149
           RLSAVNRSLKVAKSGVKKRNRQALKSKK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 148

[Close]
BLAST of Cucsa.341320 vs. NCBI nr
Match: gi|659093539|ref|XP_008447584.1| (PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo])

HSP 1 Score: 284.6 bits (727), Expect = 9.6e-74
Identity = 146/148 (98.65%), Postives = 146/148 (98.65%), Query Frame = 1 

Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPSS LHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 149
           RLSAVNRSLKVAKSGVKKRNRQALKSKK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 148

[Close]
BLAST of Cucsa.341320 vs. NCBI nr
Match: gi|728817835|gb|KHG02595.1| (hypothetical protein F383_24486 [Gossypium arboreum])

HSP 1 Score: 260.4 bits (664), Expect = 1.9e-66
Identity = 128/145 (88.28%), Postives = 139/145 (95.86%), Query Frame = 1 

Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVKRNN FLVKEFGRGTAG+QFSKE+NNLYNLNSYKHSGLANKKTVT+Q
Sbjct: 443 MATVPGQLIWEIVKRNNCFLVKEFGRGTAGIQFSKESNNLYNLNSYKHSGLANKKTVTVQ 502

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQS+LLATTK+KKQNKP+S LHKS+M+KEF RMAKAV NQV DN+YRPDLKKAALA
Sbjct: 503 PGGKDQSVLLATTKTKKQNKPASVLHKSVMRKEFPRMAKAVVNQVVDNHYRPDLKKAALA 562

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALK 146
           RLSAVNRSLKVAKSGVKKRNRQA++
Sbjct: 563 RLSAVNRSLKVAKSGVKKRNRQAVR 587

[Close]
BLAST of Cucsa.341320 vs. NCBI nr
Match: gi|590619985|ref|XP_007024421.1| (Ribosomal L28e protein family isoform 2 [Theobroma cacao])

HSP 1 Score: 258.8 bits (660), Expect = 5.7e-66
Identity = 131/145 (90.34%), Postives = 137/145 (94.48%), Query Frame = 1 

Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK+NNSFLVK+FGRGTA VQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKKNNSFLVKQFGRGTASVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
            GGKDQS+LLATTK+KKQNKPSS LHKS+M+KEF RMAKAV NQVADNYYRPDL KAALA
Sbjct: 61  SGGKDQSVLLATTKTKKQNKPSSLLHKSVMRKEFPRMAKAVKNQVADNYYRPDLTKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALK 146
           RLSAVNRSLKVAKSGVKKRNRQALK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALK 145

[Close]
BLAST of Cucsa.341320 vs. NCBI nr
Match: gi|89258491|gb|ABD65459.1| (putative ribosomal protein L28 [Gossypium hirsutum])

HSP 1 Score: 255.4 bits (651), Expect = 6.3e-65
Identity = 128/143 (89.51%), Postives = 134/143 (93.71%), Query Frame = 1 

Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWE+VKRNN FLVK+FGRGTAGV+FSKE NNLYN+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEVVKRNNCFLVKQFGRGTAGVRFSKEPNNLYNVNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           P GKDQS+LLATTKSKKQNKPSS LHKS+MKKEF RMAKAV NQV DNYYRPDL KAALA
Sbjct: 61  PAGKDQSVLLATTKSKKQNKPSSLLHKSVMKKEFPRMAKAVKNQVTDNYYRPDLTKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSAVNRSLKVAKSGVKKRNRQA
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQA 143

The following BLAST results are available for this feature:
BLAST of Cucsa.341320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL282_ARATH4.3e-5876.2260S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2 SV=1[more]
RL281_ARATH8.2e-5775.5260S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=2 SV=1[more]
RL28_SPOFR7.8e-1537.8060S ribosomal protein L28 OS=Spodoptera frugiperda GN=RpL28 PE=2 SV=1[more]
RL28_HUMAN2.3e-1431.6560S ribosomal protein L28 OS=Homo sapiens GN=RPL28 PE=1 SV=3[more]
RL28_MOUSE2.9e-1431.6560S ribosomal protein L28 OS=Mus musculus GN=Rpl28 PE=1 SV=2[more]
BLAST of Cucsa.341320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIG3_CUCSA3.6e-75100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G849920 PE=4 SV=1[more]
A0A0B0MP89_GOSAR1.4e-6688.28Uncharacterized protein OS=Gossypium arboreum GN=F383_24486 PE=4 SV=1[more]
A0A061GC89_THECC3.9e-6690.34Ribosomal L28e protein family isoform 2 OS=Theobroma cacao GN=TCM_028990 PE=4 SV... [more]
B9MST4_GOSHI4.4e-6589.51Putative ribosomal protein L28 OS=Gossypium hirsutum GN=rpl28 PE=2 SV=1[more]
B9RKC5_RICCO4.4e-6588.1960S ribosomal protein L28, putative OS=Ricinus communis GN=RCOM_1048210 PE=4 SV=... [more]
BLAST of Cucsa.341320 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G29410.12.4e-5976.22 Ribosomal L28e protein family[more]
AT2G19730.14.6e-5875.52 Ribosomal L28e protein family[more]
BLAST of Cucsa.341320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458189|ref|XP_004146830.1|5.1e-75100.00PREDICTED: 60S ribosomal protein L28-2 [Cucumis sativus][more]
gi|659093539|ref|XP_008447584.1|9.6e-7498.65PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo][more]
gi|728817835|gb|KHG02595.1|1.9e-6688.28hypothetical protein F383_24486 [Gossypium arboreum][more]
gi|590619985|ref|XP_007024421.1|5.7e-6690.34Ribosomal L28e protein family isoform 2 [Theobroma cacao][more]
gi|89258491|gb|ABD65459.1|6.3e-6589.51putative ribosomal protein L28 [Gossypium hirsutum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002672Ribosomal_L28e
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.341320.1Cucsa.341320.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002672Ribosomal protein L28ePANTHERPTHR1054460S RIBOSOMAL PROTEIN L28coord: 1..142
score: 4.6
NoneNo IPR availablePANTHERPTHR10544:SF1SUBFAMILY NOT NAMEDcoord: 1..142
score: 4.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.341320Cla012625Watermelon (97103) v1cgywmB611
Cucsa.341320Csa3G849920Cucumber (Chinese Long) v2cgycuB478
Cucsa.341320ClCG07G013610Watermelon (Charleston Gray)cgywcgB589
Cucsa.341320CSPI03G41580Wild cucumber (PI 183967)cgycpiB504
Cucsa.341320CmaCh14G012760Cucurbita maxima (Rimu)cgycmaB0927
Cucsa.341320CmaCh01G000760Cucurbita maxima (Rimu)cgycmaB0935
Cucsa.341320CmoCh14G013080Cucurbita moschata (Rifu)cgycmoB0927
Cucsa.341320CmoCh01G000750Cucurbita moschata (Rifu)cgycmoB0935
Cucsa.341320Lsi07G005570Bottle gourd (USVL1VR-Ls)cgylsiB556
Cucsa.341320Cp4.1LG02g14430Cucurbita pepo (Zucchini)cgycpeB0886
Cucsa.341320Cp4.1LG03g14270Cucurbita pepo (Zucchini)cgycpeB0889
Cucsa.341320CsaV3_3G044020Cucumber (Chinese Long) v3cgycucB523
Cucsa.341320Cla97C07G140420Watermelon (97103) v2cgywmbB589
Cucsa.341320Bhi01G002582Wax gourdcgywgoB680
Cucsa.341320Carg06447Silver-seed gourdcarcgyB0144
Cucsa.341320Carg04296Silver-seed gourdcarcgyB0246
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.341320Cucurbita pepo (Zucchini)cgycpeB0878
Cucsa.341320Cucurbita pepo (Zucchini)cgycpeB0882
Cucsa.341320Bottle gourd (USVL1VR-Ls)cgylsiB548
Cucsa.341320Melon (DHL92) v3.6.1cgymedB554
Cucsa.341320Melon (DHL92) v3.6.1cgymedB561
Cucsa.341320Silver-seed gourdcarcgyB1146
Cucsa.341320Cucumber (Chinese Long) v3cgycucB528
Cucsa.341320Watermelon (97103) v2cgywmbB592
Cucsa.341320Wax gourdcgywgoB691
Cucsa.341320Cucumber (Gy14) v1cgycgyB147
Cucsa.341320Cucurbita maxima (Rimu)cgycmaB0933
Cucsa.341320Cucurbita maxima (Rimu)cgycmaB0946
Cucsa.341320Cucurbita moschata (Rifu)cgycmoB0933
Cucsa.341320Cucurbita moschata (Rifu)cgycmoB0946
Cucsa.341320Wild cucumber (PI 183967)cgycpiB511
Cucsa.341320Cucumber (Chinese Long) v2cgycuB485
Cucsa.341320Melon (DHL92) v3.5.1cgymeB553
Cucsa.341320Melon (DHL92) v3.5.1cgymeB560
Cucsa.341320Watermelon (Charleston Gray)cgywcgB578
Cucsa.341320Watermelon (97103) v1cgywmB608