Cucsa.340450 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.340450
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold03356 : 2895332 .. 2895491 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGGTTATCTCCTTTGAAGATACTTCATCAGAAACTTTTTAATGCTAATCTTTTGGAACAACCCCAATGGCCTATGGTCATTCACGATAGAAACTTTATTGAAGATGTAGAAAGTTCAACAGATAAATTTCTCAAATCTGGAGACCACAATCTTCTATGA

mRNA sequence

GAGGTTATCTCCTTTGAAGATACTTCATCAGAAACTTTTTAATGCTAATCTTTTGGAACAACCCCAATGGCCTATGGTCATTCACGATAGAAACTTTATTGAAGATGTAGAAAGTTCAACAGATAAATTTCTCAAATCTGGAGACCACAATCTTCTATGA

Coding sequence (CDS)

GAGGTTATCTCCTTTGAAGATACTTCATCAGAAACTTTTTAATGCTAATCTTTTGGAACAACCCCAATGGCCTATGGTCATTCACGATAGAAACTTTATTGAAGATGTAGAAAGTTCAACAGATAAATTTCTCAAATCTGGAGACCACAATCTTCTATGA

Protein sequence

RLSPLKILHQKLFNANLLEQPQWPMVIHDRNFIEDVESSTDKFLKSGDHNLL*
Homology
[Close]
BLAST of Cucsa.340450 vs. TrEMBL
Match: A0A0A0LCK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G842720 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 8.1e-22
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 

Query: 1  RLSPLKILHQKLFNANLLEQPQWPMVIHDRNFIEDVESSTDKFLKSGDHNLL 53
          RLSPLKILHQKLFNANLLEQPQWPMVIHDRNFIEDVESSTDKFLKSGDHNLL
Sbjct: 23 RLSPLKILHQKLFNANLLEQPQWPMVIHDRNFIEDVESSTDKFLKSGDHNLL 74

[Close]
BLAST of Cucsa.340450 vs. NCBI nr
Match: gi|700204617|gb|KGN59750.1| (hypothetical protein Csa_3G842720 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-21
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 

Query: 1  RLSPLKILHQKLFNANLLEQPQWPMVIHDRNFIEDVESSTDKFLKSGDHNLL 53
          RLSPLKILHQKLFNANLLEQPQWPMVIHDRNFIEDVESSTDKFLKSGDHNLL
Sbjct: 23 RLSPLKILHQKLFNANLLEQPQWPMVIHDRNFIEDVESSTDKFLKSGDHNLL 74

The following BLAST results are available for this feature:
BLAST of Cucsa.340450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCK6_CUCSA8.1e-22100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G842720 PE=4 SV=1[more]
BLAST of Cucsa.340450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204617|gb|KGN59750.1|1.2e-21100.00hypothetical protein Csa_3G842720 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.340450.1Cucsa.340450.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.340450Csa3G842720Cucumber (Chinese Long) v2cgycuB478
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.340450Cucumber (Chinese Long) v3cgycucB523
Cucsa.340450Watermelon (97103) v2cgywmbB582
Cucsa.340450Wax gourdcgywgoB676
Cucsa.340450Cucurbita moschata (Rifu)cgycmoB0928
Cucsa.340450Wild cucumber (PI 183967)cgycpiB504
Cucsa.340450Melon (DHL92) v3.5.1cgymeB557
Cucsa.340450Melon (DHL92) v3.5.1cgymeB558
Cucsa.340450Watermelon (Charleston Gray)cgywcgB579
Cucsa.340450Watermelon (97103) v1cgywmB609
Cucsa.340450Bottle gourd (USVL1VR-Ls)cgylsiB551
Cucsa.340450Melon (DHL92) v3.6.1cgymedB558
Cucsa.340450Melon (DHL92) v3.6.1cgymedB559