Cucsa.340440 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.340440
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionLINE-1 reverse transcriptase like
Locationscaffold03356 : 2890703 .. 2892839 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGTGGAGGATTATATAATCAGAAAAAAGAAAGGATGGATCATTAAATTAGACCTTGAAAAAGCTTTCGACAGAGTGGACTGGGCATTTTTCAATGGAAGAAGAACTTGAAAAGGTAATGCGTAAGAAGAACTTCGCTGAAAAATGGATCTTATGGATAATGGGTTGTATCAAGAATCCTAAATATTCGGTCTTTATCAATGGAAGGCCAAGAGGAAGAATTTCAGCTCCAAGGGGTCTTAGACAAGGAGATCCTCTTTCTCCCTTCCTTTTTCTTCTGGTCAGTGAAGTCTTGAGCAGTCTCTTCTCCAACCTTCATAAGAAAGAAATGTTTGAAGGCTTTGTAGTTGGAAAAGATAGGGTTCACATTCCTATCCTTCAATTTGCAGATGATACACTCTTGTTTTGTAAATATGATGAGGAAATGATGGAAAATCTTAAAAAGACATTACTAGTCTTTGAATGGTGTTCCGGTCAAAAGATTAATTGGGAGAAATTAGCTATTTGTGGTTTAAATATTGAGGACAGCAAGGTTATTTCAACAGCAAACATATAAACTGCAAAGTAGAAAGTCTCCCCTTCATTTATCTCGGTCTTCCTTTGGGAGGTTATCGAAAGAGTGCTCGATTTTGGCAACCCATTCTTGATAAAATCCATGGAAAGCTAGATAAATGGAGAAGATACAATCTCTCTAGGGGTGGGAGGATTACACTATGCAAATCAGTTTTGTCCAGCCTCCCTACATACTATATGTCTGTTTTCCTCATGCCAGAATCTGCTCTAAGCTCTTTGGAAAGAATCATAAGAAAGTTCTTTTGGGAAGGAAACAAGGGAGGAAGGCTTAACCACCTAGTAAAATGGGATGTTGTAATTAAATCCTACAGAGATGGAGGACTTAGTTTGGGCAAGTTGAAGCACAAGAATATGGCCCTATTGTCTAAGTGGGGTTGGCGTTTCTCAAAAGAACAAAACTCCCTTTGGTGTCAAGTGATAAGAAGCATACATGGAAGTAGCACTTTCAACTGGGGCATTCAAATGGAAAAGAAACCGTGAGTCTAAGAAGCCCTTGGATTAGCATATCAAGGCAATGACGCAAAATTGATTCTTTGGCTCTTTTCAAATTAGGTGAAGGCAGCAGAATATTGTTTTGGAAGCACCCTTGGGTGGACATTATCACCTTGGAGTGTAAATCTTCAAGATTGGGTAGGATCGCACTCAACCCAAATGGGTCTGTTTTAGATCATTGGGACACGTCAACCAACTCTTGGTCTATCTATTTCAGAAGGTTGCTTAATGATGAGGAGATATTAGATTTTCAGGCCTTGTTGAGTCAGATTTCTTCTTCACAACCAGCCTCTTTTCCGGATCAAAGGTTTTGGTCCCTTGAAAACTCAGGTTCTTTCTTGGTAAAATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGAGATTGTTCTAAATTGGCCAACCTTTATAGCCTCCCCACCCTGAAGTTCTAGAGTTTCTTGCCTTCCAAATCAGCCTTTTGCTCCAATCAGTTTTTGCTCAATCAAGGACTACTATTTTGTTTTGGATTCGGCTTGCTGCCTTGCTTATGTTTCTGTTTTGGATATTTTGTTTGGCCTTGTATTGTGACCTTTTAAACTCTTGTTTGGCCTTGTTTTATGGCCTTTGTTTGACTCTTGTATTGCTTTTAGAAACATGGTATTTAGGTTTTGTTTTTTTTCCGCTTTTTGGATTTGATGAGGGTGCTAAGGGGGTGTCAACCTAG

mRNA sequence

ctgtggaggattatataatcagaaaaaagaaaggatggatcattaaattagaccttgaaaaagctttcgacagagtaatgcgtaagaagaacttcgctgaaaaatggatcttatggataatgggttgtatcaagaatcctaaatattcggtctttatcaatggaaggccaagaggaagaatttcagctccaaggggtcttagacaaggagatcctctttctcccttcctttttcttctggtcagtgaagtcttgagcagtctcttctccaaccttcataagaaagaaatgtttgaaggctttgtagttggaaaagatagggttcacattcctatccttcaatttgcagatgatacactcttgttttgtaaatatgatgaggaaatgatggaaaatcttaaaaagacattactagtctttgaatgcaaacatataaactgcaaagtagaaagtctccccttcatttatctcggtcttcctttgggaggttatcgaaagagtgctcgattttggcaacccattcttgataaaatccatggaaagctagataaatggagaagatacaatctctctaggggtgggaggattacactatgcaaatcagttttgtccagcctccctacatactatatgtctgttttcctcatgccagaatctgctctaagctctttggaaagaatcataagaaagttcttttgggaaggaaacaagggaggaaggcttaaccacctagtaaaatgggatgttgtaattaaatcctacagagatggaggacttagtttgggcaagttgaagcacaagaatatggccctattgtctaagtggggttggcgtttctcaaaagaacaaaactccctttggtgtcaagtgataagaagcatacatggaagtgaaggcagcagaatattgttttggaagcacccttgggtggacattatcaccttggagtgtaaatcttcaagattgggtaggatcgcactcaacccaaatgggtctgttttagatcattgggacacgtcaaccaactcttggtctatctatttcagaaggttgcttaatgatgaggagatattagattttcaggccttgttgagtcagatttcttcttcacaaccagcctcttttccggatcaaaggttttggtcccttgaaaactcaggttctttcttgggtgctaagggggtgtcaacctag

Coding sequence (CDS)

CTGTGGAGGATTATATAATCAGAAAAAAGAAAGGATGGATCATTAAATTAGACCTTGAAAAAGCTTTCGACAGAGTAATGCGTAAGAAGAACTTCGCTGAAAAATGGATCTTATGGATAATGGGTTGTATCAAGAATCCTAAATATTCGGTCTTTATCAATGGAAGGCCAAGAGGAAGAATTTCAGCTCCAAGGGGTCTTAGACAAGGAGATCCTCTTTCTCCCTTCCTTTTTCTTCTGGTCAGTGAAGTCTTGAGCAGTCTCTTCTCCAACCTTCATAAGAAAGAAATGTTTGAAGGCTTTGTAGTTGGAAAAGATAGGGTTCACATTCCTATCCTTCAATTTGCAGATGATACACTCTTGTTTTGTAAATATGATGAGGAAATGATGGAAAATCTTAAAAAGACATTACTAGTCTTTGAATGCAAACATATAAACTGCAAAGTAGAAAGTCTCCCCTTCATTTATCTCGGTCTTCCTTTGGGAGGTTATCGAAAGAGTGCTCGATTTTGGCAACCCATTCTTGATAAAATCCATGGAAAGCTAGATAAATGGAGAAGATACAATCTCTCTAGGGGTGGGAGGATTACACTATGCAAATCAGTTTTGTCCAGCCTCCCTACATACTATATGTCTGTTTTCCTCATGCCAGAATCTGCTCTAAGCTCTTTGGAAAGAATCATAAGAAAGTTCTTTTGGGAAGGAAACAAGGGAGGAAGGCTTAACCACCTAGTAAAATGGGATGTTGTAATTAAATCCTACAGAGATGGAGGACTTAGTTTGGGCAAGTTGAAGCACAAGAATATGGCCCTATTGTCTAAGTGGGGTTGGCGTTTCTCAAAAGAACAAAACTCCCTTTGGTGTCAAGTGATAAGAAGCATACATGGAAGTGAAGGCAGCAGAATATTGTTTTGGAAGCACCCTTGGGTGGACATTATCACCTTGGAGTGTAAATCTTCAAGATTGGGTAGGATCGCACTCAACCCAAATGGGTCTGTTTTAGATCATTGGGACACGTCAACCAACTCTTGGTCTATCTATTTCAGAAGGTTGCTTAATGATGAGGAGATATTAGATTTTCAGGCCTTGTTGAGTCAGATTTCTTCTTCACAACCAGCCTCTTTTCCGGATCAAAGGTTTTGGTCCCTTGAAAACTCAGGTTCTTTCTTGGGTGCTAAGGGGGTGTCAACCTAG

Protein sequence

VEDYIIRKKKGWIIKLDLEKAFDRVMRKKNFAEKWILWIMGCIKNPKYSVFINGRPRGRISAPRGLRQGDPLSPFLFLLVSEVLSSLFSNLHKKEMFEGFVVGKDRVHIPILQFADDTLLFCKYDEEMMENLKKTLLVFECKHINCKVESLPFIYLGLPLGGYRKSARFWQPILDKIHGKLDKWRRYNLSRGGRITLCKSVLSSLPTYYMSVFLMPESALSSLERIIRKFFWEGNKGGRLNHLVKWDVVIKSYRDGGLSLGKLKHKNMALLSKWGWRFSKEQNSLWCQVIRSIHGSEGSRILFWKHPWVDIITLECKSSRLGRIALNPNGSVLDHWDTSTNSWSIYFRRLLNDEEILDFQALLSQISSSQPASFPDQRFWSLENSGSFLGAKGVST*
Homology
[Close]
BLAST of Cucsa.340440 vs. Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.1e-22
Identity = 57/139 (41.01%), Postives = 81/139 (58.27%), Query Frame = 1 

Query: 173 ILDKIHGKLDKWRRYNLSRGGRITLCKSVLSSLPTYYMSVFLMPESALSSLERIIRKFFW 232
           IL+++  ++  WR   LS  GR+TL K+VLSS+P + MS  L+P+S L+ L+++ R F W
Sbjct: 16  ILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLW 75

Query: 233 EGNKGGRLNHLVKWDVVIKSYRDGGLSLGKLKHKNMALLSKWGWRFSKEQNSLWCQVI-R 292
                 +  HLVKW  V    ++GGL +   K  N AL+SK GWR  +E+NSLW  V+ +
Sbjct: 76  GSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQK 135

Query: 293 SIHGSE--GSRILFWKHPW 309
             H  E   SR L  K  W
Sbjct: 136 KYHVGEIRDSRWLIPKGSW 154

[Close]
BLAST of Cucsa.340440 vs. Swiss-Prot
Match: LORF2_HUMAN (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-12
Identity = 75/309 (24.27%), Postives = 129/309 (41.75%), Query Frame = 1 

Query: 7   RKKKGWIIKLDLEKAFDRV--------MRKKNFAEKWILWIMGCIKNPKYSVFINGRPRG 66
           + K   II +D EKAFD++        + K      ++  I      P  ++ +NG+   
Sbjct: 590 KDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLE 649

Query: 67  RISAPRGLRQGDPLSPFLFLLVSEVLSSLFSNLHKKEMFEGFVVGKDRVHIPILQFADDT 126
                 G RQG PLSP LF +V EVL+     + +++  +G  +GK+ V + +  FADD 
Sbjct: 650 AFPLKTGTRQGCPLSPLLFNIVLEVLARA---IRQEKEIKGIQLGKEEVKLSL--FADDM 709

Query: 127 LLFCKYDEEMMENLKKTLLVFE---------------CKHINCKVES-----LPFI---- 186
           +++ +      +NL K +  F                  + N + ES     LPF     
Sbjct: 710 IVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYNNNRQTESQIMGELPFTIASK 769

Query: 187 ---YLGLPLGGYRKS--ARFWQPILDKIHGKLDKWRRYNLSRGGRITLCKSVLSSLPTYY 246
              YLG+ L    K      ++P+L +I    +KW+    S  GRI + K  +     Y 
Sbjct: 770 RIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYR 829

Query: 247 MSV--FLMPESALSSLERIIRKFFWEGNKGGRLNHLVKWDVVIKSYRDGGLSLGKLKHKN 277
            +     +P +  + LE+   KF W   +       +   ++ +  + GG++L   K   
Sbjct: 830 FNAIPIKLPMTFFTELEKTTLKFIWNQKRA-----RIAKSILSQKNKAGGITLPDFKLYY 888

[Close]
BLAST of Cucsa.340440 vs. Swiss-Prot
Match: LIN1_NYCCO (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.8e-11
Identity = 90/395 (22.78%), Postives = 163/395 (41.27%), Query Frame = 1 

Query: 6   IRKKKGWIIKLDLEKAFD--------RVMRKKNFAEKWILWIMGCIKNPKYSVFINGRPR 65
           ++ K   I+ +D EKAFD        R ++K      ++  I      P  ++ +NG   
Sbjct: 588 LKNKDHMILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKL 647

Query: 66  GRISAPRGLRQGDPLSPFLFLLVSEVLSSLFSNLHKKEMFEGFVVGKDRVHIPILQFADD 125
                  G RQG PLSP LF +V EVL+     + +++  +G  +G + + + +  FADD
Sbjct: 648 KSFPLRSGTRQGCPLSPLLFNIVMEVLAIA---IREEKAIKGIHIGSEEIKLSL--FADD 707

Query: 126 TLLFCKYDEE----MMENLKKTLLVFECKHINCK----------------VESLPFI--- 185
            +++ +   +    ++E +K+   V   K    K                 +S+PF    
Sbjct: 708 MIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYTNNNQAEKTVKDSIPFTVVP 767

Query: 186 ----YLGLPLGGYRKS--ARFWQPILDKIHGKLDKWRRYNLSRGGRITLCKSVLSSLPTY 245
               YLG+ L    K      ++ +  +I   ++KW+    S  GRI + K  +     Y
Sbjct: 768 KKMKYLGVYLTKDVKDLYKENYETLRKEIAEDVNKWKNIPCSWLGRINIVKMSILPKAIY 827

Query: 246 YMSVFLM--PESALSSLERIIRKFFWEGNKGGRLNHLVKWDVVIKSYRDGGLSLGKLK-- 305
             +   +  P S    LE+II  F W   K      L+         + GG++L  L+  
Sbjct: 828 NFNAIPIKAPLSYFKDLEKIILHFIWNQKKPQIAKTLLS-----NKNKAGGITLPDLRLY 887

Query: 306 HKNMALLSKWGWRFSKEQNSLWCQV------------------IRSIHGSEGSRILFWKH 342
           +K++ + + W W  ++E + +W ++                  I++I   + S  LF K 
Sbjct: 888 YKSIVIKTAWYWHKNREVD-VWNRIENQEMDPATYHYLIFDKPIKNIQWGKDS--LFNKW 947

[Close]
BLAST of Cucsa.340440 vs. Swiss-Prot
Match: LORF2_MOUSE (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus GN=Pol PE=1 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 2.4e-10
Identity = 77/322 (23.91%), Postives = 128/322 (39.75%), Query Frame = 1 

Query: 6   IRKKKGWIIKLDLEKAFDR--------VMRKKNFAEKWILWIMGCIKNPKYSVFINGRPR 65
           ++ K   II LD EKAFD+        V+ +      ++  I      P  ++ +NG   
Sbjct: 596 LKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNGEKL 655

Query: 66  GRISAPRGLRQGDPLSPFLFLLVSEVLSSLFSNLHKKEMFEGFVVGKDRVHIPILQFADD 125
             I    G RQG PLSP+LF +V EVL+     + +++  +G  +GK+ V I +L  ADD
Sbjct: 656 EAIPLKSGTRQGCPLSPYLFNIVLEVLARA---IRQQKEIKGIQIGKEEVKISLL--ADD 715

Query: 126 TLLFCKYDE-------------------EMMENLKKTLLVFECKHINCKV-ESLPFI--- 185
            +++    +                   ++  N     L  + K    ++ E+ PF    
Sbjct: 716 MIVYISDPKNSTRELLNLINSFGEVVGYKINSNKSMAFLYTKNKQAEKEIRETTPFSIVT 775

Query: 186 ----YLGLPLGGYRKSARFWQPILDKIHGKLDK--------WRRYNLSRGGRITLCKSVL 245
               YLG+ L       +  + + DK    L K        W+    S  GRI + K  +
Sbjct: 776 NNIKYLGVTL------TKEVKDLYDKNFKSLKKEIKEDLRRWKDLPCSWIGRINIVKMAI 835

Query: 246 SSLPTYYMSV--FLMPESALSSLERIIRKFFWEGNKGGRLNHLVKWDVVIKSYRDGGLSL 283
                Y  +     +P    + LE  I KF W   K      L+K          GG+++
Sbjct: 836 LPKAIYRFNAIPIKIPTQFFNELEGAICKFVWNNKKPRIAKSLLK-----DKRTSGGITM 895

[Close]
BLAST of Cucsa.340440 vs. Swiss-Prot
Match: M1250_ARATH (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.4e-09
Identity = 33/67 (49.25%), Postives = 42/67 (62.69%), Query Frame = 1 

Query: 52  INGRPRGRISAPRGLRQGDPLSPFLFLLVSEVLSSLFSNLHKKEMFEGFVVGKDRVHIPI 111
           ING P+G ++  RGLRQGDPLSP+LF+L +EVLS L     ++    G  V  +   I  
Sbjct: 14  INGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINH 73

Query: 112 LQFADDT 119
           L FADDT
Sbjct: 74  LLFADDT 80

[Close]
BLAST of Cucsa.340440 vs. TrEMBL
Match: M5XHS0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020085mg PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 2.8e-74
Identity = 167/451 (37.03%), Postives = 246/451 (54.55%), Query Frame = 1 

Query: 1   VEDYIIRKKKGWIIKLDLEKAFDRV--------MRKKNFAEKWILWIMGCIKNPKYSVFI 60
           VE+   +K+KG + K+D EKA+D V        + +K F  KW  WI+GC+++  +S+ I
Sbjct: 543 VEEVRKQKRKGLVFKIDFEKAYDHVEWNFVDDVLVRKGFGAKWRGWIIGCLESVNFSIMI 602

Query: 61  NGRPRGRISAPRGLRQGDPLSPFLFLLVSEVLSSLFSNLHKKEMFEGFVVGKDRVHIPIL 120
           NG+PRG+  A RGLRQGDPLSPFLF LVS+VLS +        +  G V G D+V +  L
Sbjct: 603 NGKPRGKFRASRGLRQGDPLSPFLFTLVSDVLSRIIERAQDVNLVHGIVSGHDQVEVSHL 662

Query: 121 QFADDTLLFCKYDEEMMENLKKTL--------------------LVFECKHIN------- 180
           QFADDT+      EE   NL + L                    + F    +N       
Sbjct: 663 QFADDTIFLLDGKEEYWLNLLQLLKLFCEVSGMKINKAKSCILGINFSTDALNNMAGSWG 722

Query: 181 CKVESLPFIYLGLPLGGYRKSARFWQPILDKIHGKLDKWRRYNLSRGGRITLCKSVLSSL 240
           C+V   P +YLGLPLGG  ++  FW P++DK+  +L KW+R  LS+GGR+TL ++VLSS+
Sbjct: 723 CEVGCWPMVYLGLPLGGNPRALNFWNPVMDKVEKRLQKWKRACLSKGGRLTLIQAVLSSI 782

Query: 241 PTYYMSVFLMPESALSSLERIIRKFFWEGNKGGRLNHLVKWDVVIKSYRDGGLSLGKLKH 300
           P+YYMS+F MP    + +E+++R F WEG + G+  HLV+W+ V KS  +GGL +G L+ 
Sbjct: 783 PSYYMSLFKMPIGVAAKVEQLMRNFLWEGLEDGKNCHLVRWERVTKSKEEGGLGIGSLRE 842

Query: 301 KNMALLSKWGWRFSKEQNSLWCQVIRSIHGSEGS-------RILFWKHPWVDIIT----- 360
           +N AL +KW WRF  E NSLW ++I+S +G + +         +  ++PW +I       
Sbjct: 843 RNEALRAKWLWRFPLEPNSLWHRIIKSKYGIDSNGWDTKQIDKVSCRNPWREISKGYNSF 902

Query: 361 LECKSSRLGRIALNPNGSVLDHWD---------------TSTNSWSIYFRRLLNDEEILD 389
           L+C    +G      NG  +  W+                S+ S     +R L++ EI +
Sbjct: 903 LQCCRFSVG------NGEKIRFWEDFWLKEGILKDLFPRLSSLSRRKKSKRNLSEAEIAE 962

[Close]
BLAST of Cucsa.340440 vs. TrEMBL
Match: A5BV95_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026478 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.4e-73
Identity = 157/419 (37.47%), Postives = 238/419 (56.80%), Query Frame = 1 

Query: 9    KKGWIIKLDLEKAFDRV--------MRKKNFAEKWILWIMGCIKNPKYSVFINGRPRGRI 68
            ++G + K+D EKA+D V        +++K F++KW LWI GC+ +  +++ +NG  +G +
Sbjct: 1195 EEGIVFKIDFEKAYDHVDWGFLDHVLQRKGFSQKWRLWIRGCLSSSSFAILVNGNAKGWV 1254

Query: 69   SAPRGLRQGDPLSPFLFLLVSEVLSSLFSNLHKKEMFEGFVVGKDRVHIPILQFADDTLL 128
             A RGLRQGDPLSPFLF LV++VLS +     +  + EGF VG+DR  + +LQFADDT+ 
Sbjct: 1255 KASRGLRQGDPLSPFLFTLVADVLSRMLFRAEETGLTEGFSVGRDRTRVSLLQFADDTIF 1314

Query: 129  FCKYDEEMMENLKKTLLVFE---------------------------CKHINCKVESLPF 188
            F K   E ++NLK  LLVF                                +C+V   P 
Sbjct: 1315 FSKASMEHLQNLKIILLVFGQVSGLKINLEKSTISGINTRQELLSSLASVFDCRVSEWPL 1374

Query: 189  IYLGLPLGGYRKSARFWQPILDKIHGKLDKWRRYNLSRGGRITLCKSVLSSLPTYYMSVF 248
             YLGLPLGG  K+  FW P++++I  +LD W++  LS GGRITL +S LS +P+Y++S+F
Sbjct: 1375 SYLGLPLGGNPKTIGFWDPVVERISRRLDGWKKAYLSLGGRITLIQSCLSHIPSYFLSLF 1434

Query: 249  LMPESALSSLERIIRKFFWEGNKGGRLNHLVKWDVVIKSYRDGGLSLGKLKHKNMALLSK 308
             +P S  S +E++ R F W G   G+ +HLV+W+VV +    GGL  GK+  +N+ALL K
Sbjct: 1435 KIPASIASKIEKMQRNFLWSGAGEGKKDHLVRWEVVSRPKELGGLGFGKISLRNIALLGK 1494

Query: 309  WGWRFSKEQNSLWCQVIRSIHGS-----EGSRILFWKH--PWVDIITLECKSSRLGRIAL 368
            W WRF +E++ LW +VI SI+G+     + + ++ W H  PW  I  +  + S   R+ +
Sbjct: 1495 WLWRFPRERSGLWYKVIGSIYGTHPNGWDANMVVRWSHRCPWKAIAQVFQEFSPFVRLVV 1554

Query: 369  NPNGSVLDHWDT---STNSWSIYFRRLLNDEEILDFQALLSQISSSQPASF-PDQRFWS 382
              NG  +  W+     + +WS+    L     +  F   LS++S+  P  F P +  WS
Sbjct: 1555 G-NGERIRFWEDLWWDSRAWSLSSSGLFT---VKSFFLALSKVSN--PILFLPAKFLWS 1607

[Close]
BLAST of Cucsa.340440 vs. TrEMBL
Match: A5BI72_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000131 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.4e-73
Identity = 169/458 (36.90%), Postives = 238/458 (51.97%), Query Frame = 1 

Query: 9   KKGWIIKLDLEKAFDRV--------MRKKNFAEKWILWIMGCIKNPKYSVFINGRPRGRI 68
           ++G + K+D EKA+D V        M  K F  +W  W+ GC+ +  ++V +NG  +G +
Sbjct: 126 EEGVVFKIDFEKAYDHVSWDFLDHVMEMKGFGIRWRKWMRGCLSSVSFAVLVNGNAKGWV 185

Query: 69  SAPRGLRQGDPLSPFLFLLVSEVLSSLFSNLHKKEMFEGFVVGKDRVHIPILQFADDTLL 128
            A RGLRQGDPLSPFLF +V++VLS +     ++ + EGF VG++R  +  LQFADDT+ 
Sbjct: 186 KASRGLRQGDPLSPFLFTIVADVLSRMLLKAEERNVLEGFKVGRNRTRVSHLQFADDTIF 245

Query: 129 FCKYDEEMMENLKKTLLVF--------------------ECKHIN-------CKVESLPF 188
           F    EE M  LK  LLVF                    E  H++       CK    P 
Sbjct: 246 FSSSREEDMMTLKNVLLVFGHISGLKVNLDKSNIYGINLEQNHLSRLAEMLDCKASGWPI 305

Query: 189 IYLGLPLGGYRKSARFWQPILDKIHGKLDKWRRYNLSRGGRITLCKSVLSSLPTYYMSVF 248
           +YLGLPLGG  K++ FW P++++I  +LD W++  LS GGRITL +S L+ +P Y++S+F
Sbjct: 306 LYLGLPLGGNPKTSGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLF 365

Query: 249 LMPESALSSLERIIRKFFWEGNKGGRLNHLVKWDVVIKSYRDGGLSLGKLKHKNMALLSK 308
            +P S  + +ER+ R F W G   G+ +HLV WDVV K    GGL  GK+  +N+ALL K
Sbjct: 366 KIPASVAAKIERMQRDFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKISIRNVALLGK 425

Query: 309 WGWRFSKEQNSLWCQVIRSIHGSEG-----SRILFWKH--PWVDIITLECKSSRLGRIAL 368
           W WR+ +E ++LW QVI SI+GS       + I+ W H  PW  I  +  + S+  R  +
Sbjct: 426 WLWRYPREGSALWHQVILSIYGSHSNGWDVNNIVRWSHRCPWKAIALVYQEFSKFTRFVV 485

Query: 369 NPNGSVLDHWD---------------------------------TSTNSWSIYFRRLLND 389
             NG  +  WD                                 T   SW+  FRR  N 
Sbjct: 486 G-NGDRIRFWDDLWWGEQPLGVQYPRLLRVVTDKNAPISSILGSTRPFSWNFTFRR--NL 545

[Close]
BLAST of Cucsa.340440 vs. TrEMBL
Match: A5C4H7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009635 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.4e-73
Identity = 169/458 (36.90%), Postives = 238/458 (51.97%), Query Frame = 1 

Query: 9   KKGWIIKLDLEKAFDRV--------MRKKNFAEKWILWIMGCIKNPKYSVFINGRPRGRI 68
           ++G + K+D EKA+D V        +  K F  +W  W+ GC+ +  ++V +NG  +G +
Sbjct: 126 EEGVVFKIDFEKAYDHVSWDFLDHVLEMKGFGIRWRKWMRGCLSSVSFAVLVNGNAKGWV 185

Query: 69  SAPRGLRQGDPLSPFLFLLVSEVLSSLFSNLHKKEMFEGFVVGKDRVHIPILQFADDTLL 128
            A RGLRQGDPLSPFLF +V++VLS +     ++ + EGF VG++R  +  LQFADDT+ 
Sbjct: 186 KASRGLRQGDPLSPFLFTIVADVLSRMLLKAEERNVLEGFKVGRNRTRVSHLQFADDTIF 245

Query: 129 FCKYDEEMMENLKKTLLVF--------------------ECKHIN-------CKVESLPF 188
           F    EE M  LK  LLVF                    E  H++       CK    P 
Sbjct: 246 FSSSREEDMMTLKNVLLVFGHISGLKVNLDKSNIYGINLEQNHLSRLAEMLDCKASGWPI 305

Query: 189 IYLGLPLGGYRKSARFWQPILDKIHGKLDKWRRYNLSRGGRITLCKSVLSSLPTYYMSVF 248
           +YLGLPLGG  K++ FW P++++I  +LD W++  LS GGRITL +S L+ +P Y++S+F
Sbjct: 306 LYLGLPLGGNPKTSGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLF 365

Query: 249 LMPESALSSLERIIRKFFWEGNKGGRLNHLVKWDVVIKSYRDGGLSLGKLKHKNMALLSK 308
            +P S  S +ER+ R F W G   G+ +HLV WDVV K    GGL  GK+  +N+ALL K
Sbjct: 366 KIPASVASKIERMQRDFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKISIRNVALLGK 425

Query: 309 WGWRFSKEQNSLWCQVIRSIHGSEG-----SRILFWKH--PWVDIITLECKSSRLGRIAL 368
           W WR+ +E ++LW QVI SI+GS       + I+ W H  PW  I  +  + S+  R  +
Sbjct: 426 WLWRYPREGSALWHQVILSIYGSHSNGWDVNNIVRWSHRCPWKAIALVYQEFSKFTRFVV 485

Query: 369 NPNGSVLDHWD---------------------------------TSTNSWSIYFRRLLND 389
             NG  +  WD                                 T   SW+  FRR  N 
Sbjct: 486 G-NGDRIRFWDDLWWGEQPLGVQYPRLLRVVTDKNAPISSILGYTRPFSWNFTFRR--NL 545

[Close]
BLAST of Cucsa.340440 vs. TrEMBL
Match: A5AXP7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010897 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 5.2e-73
Identity = 168/458 (36.68%), Postives = 238/458 (51.97%), Query Frame = 1 

Query: 9   KKGWIIKLDLEKAFDRV--------MRKKNFAEKWILWIMGCIKNPKYSVFINGRPRGRI 68
           ++G + K+D EKA+D V        +  K F  +W  W+ GC+ +  ++V +NG  +G +
Sbjct: 19  EEGVVFKIDFEKAYDHVSWDFLDHVLEMKGFGIRWRKWMRGCLSSVSFAVLVNGNAKGWV 78

Query: 69  SAPRGLRQGDPLSPFLFLLVSEVLSSLFSNLHKKEMFEGFVVGKDRVHIPILQFADDTLL 128
            A RGLRQGDPLSPFLF +V++VLS +     ++ + EGF VG++R  +  LQFADDT+ 
Sbjct: 79  KASRGLRQGDPLSPFLFTIVADVLSRMLLKAEERNVLEGFKVGRNRTRVSHLQFADDTIF 138

Query: 129 FCKYDEEMMENLKKTLLVF--------------------ECKHIN-------CKVESLPF 188
           F    EE M  LK  LLVF                    E  H++       CK    P 
Sbjct: 139 FSSSREEDMMTLKNVLLVFGHISGLKVNLDKSNIYGINLEQNHLSRLAEMLDCKASGWPI 198

Query: 189 IYLGLPLGGYRKSARFWQPILDKIHGKLDKWRRYNLSRGGRITLCKSVLSSLPTYYMSVF 248
           +YLGLPLGG  K++ FW P++++I  +LD W++  LS GGRITL +S L+ +P Y++S+F
Sbjct: 199 LYLGLPLGGNPKTSGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLF 258

Query: 249 LMPESALSSLERIIRKFFWEGNKGGRLNHLVKWDVVIKSYRDGGLSLGKLKHKNMALLSK 308
            +P S  + +ER+ R F W G   G+ +HLV WDVV K    GGL  GK+  +N+ALL K
Sbjct: 259 KIPASVAAKIERMQRDFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKISIRNVALLGK 318

Query: 309 WGWRFSKEQNSLWCQVIRSIHGSEG-----SRILFWKH--PWVDIITLECKSSRLGRIAL 368
           W WR+ +E ++LW QVI SI+GS       + I+ W H  PW  I  +  + S+  R  +
Sbjct: 319 WLWRYPREGSALWHQVILSIYGSHSNGWDVNNIVRWSHRCPWKAIALVYQEFSKFTRFVV 378

Query: 369 NPNGSVLDHWD---------------------------------TSTNSWSIYFRRLLND 389
             NG  +  WD                                 T   SW+  FRR  N 
Sbjct: 379 G-NGDRIWFWDDLWWGEQPLGVQYPRLLRVVTDKNAPISSILGYTRPFSWNFTFRR--NL 438

[Close]
BLAST of Cucsa.340440 vs. TAIR10
Match: ATMG01250.1 (ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase))

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-10
Identity = 33/67 (49.25%), Postives = 42/67 (62.69%), Query Frame = 1 

Query: 52  INGRPRGRISAPRGLRQGDPLSPFLFLLVSEVLSSLFSNLHKKEMFEGFVVGKDRVHIPI 111
           ING P+G ++  RGLRQGDPLSP+LF+L +EVLS L     ++    G  V  +   I  
Sbjct: 14  INGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINH 73

Query: 112 LQFADDT 119
           L FADDT
Sbjct: 74  LLFADDT 80

[Close]
BLAST of Cucsa.340440 vs. NCBI nr
Match: gi|658030603|ref|XP_008350747.1| (PREDICTED: uncharacterized protein LOC103414113 [Malus domestica])

HSP 1 Score: 298.9 bits (764), Expect = 1.3e-77
Identity = 159/387 (41.09%), Postives = 230/387 (59.43%), Query Frame = 1 

Query: 1    VEDYIIRKKKGWIIKLDLEKAFDRV--------MRKKNFAEKWILWIMGCIKNPKYSVFI 60
            VE+   +K++G ++K+D EKA+D V        +++K+F  +W  W+ GC+ +  +SV I
Sbjct: 1113 VEEVRQKKEEGLVLKIDFEKAYDHVEWRFLDEVLQRKSFGNRWRKWMQGCLSSANFSVLI 1172

Query: 61   NGRPRGRISAPRGLRQGDPLSPFLFLLVSEVLSSLFSNLHKKEMFEGFVVGKDRVHIPIL 120
            NGRPRG+  A RGLRQGDPLSPFLF LV +VLS L     +  + +G  +G+++V I  L
Sbjct: 1173 NGRPRGKFQASRGLRQGDPLSPFLFTLVVDVLSRLMEKAQENHLIKGLCIGQEKVEIXHL 1232

Query: 121  QFADDTLLFCKYDEEMMENLKKTLLVF--------------------ECKHIN------- 180
            QFADDT+ F   DE    NL + L +F                    +C+ +N       
Sbjct: 1233 QFADDTIFFLAEDEGGWNNLLELLKLFCSVSGLKINKAKCYLAGINSDCEKLNRLADSWG 1292

Query: 181  CKVESLPFIYLGLPLGGYRKSARFWQPILDKIHGKLDKWRRYNLSRGGRITLCKSVLSSL 240
            C+V S P  YLGLPLGG  ++ +FW P++DK+  +L  W++  LSRGGR+TL +SVL SL
Sbjct: 1293 CEVGSWPIKYLGLPLGGRPRALKFWDPVVDKMEKRLQSWKKAFLSRGGRLTLIQSVLGSL 1352

Query: 241  PTYYMSVFLMPESALSSLERIIRKFFWEGNKGGRLNHLVKWDVVIKSYRDGGLSLGKLKH 300
            PTYYMS+F MP   +  LE++++ F WEG + G+ N+LVKW++VIKS  +GGL +G L++
Sbjct: 1353 PTYYMSLFKMPCGVIGRLEKLMKGFLWEGVEEGKKNNLVKWEIVIKSKEEGGLGVGNLRN 1412

Query: 301  KNMALLSKWGWRFSKEQNSLWCQVIRSIHGSEGSRILFW----------KHPWVDI---- 338
            +N ALL+KW WRF KE +SLW +VIRS +G + +    W          + PW DI    
Sbjct: 1413 RNEALLAKWLWRFPKEPHSLWHKVIRSKYGLQDNG---WNAFPPIRGSSRSPWKDISIGS 1472

[Close]
BLAST of Cucsa.340440 vs. NCBI nr
Match: gi|658048925|ref|XP_008360144.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 297.0 bits (759), Expect = 5.0e-77
Identity = 158/387 (40.83%), Postives = 229/387 (59.17%), Query Frame = 1 

Query: 1   VEDYIIRKKKGWIIKLDLEKAFDRV--------MRKKNFAEKWILWIMGCIKNPKYSVFI 60
           VE+   +K++G ++K+D EKA+D V        +++K+F  +W  W+ GC+ +  +SV I
Sbjct: 90  VEEVRQKKEEGLVLKIDFEKAYDHVEWRFLDEVLQRKSFGNRWRKWMQGCLSSANFSVLI 149

Query: 61  NGRPRGRISAPRGLRQGDPLSPFLFLLVSEVLSSLFSNLHKKEMFEGFVVGKDRVHIPIL 120
           NGRPRG+  A RGLRQGDPLSPFLF LV +VLS L     +  + +G  +G+++V I  L
Sbjct: 150 NGRPRGKFQASRGLRQGDPLSPFLFTLVVDVLSRLMEKAQENHLIKGLCIGQEKVEISHL 209

Query: 121 QFADDTLLFCKYDEEMMENLKKTLLVF--------------------ECKHIN------- 180
           QFADDT+ F   +E    NL + L +F                    +C+ +N       
Sbjct: 210 QFADDTIFFLAXBEGGWNNLLELLKLFCSVSGLKINKAKCYLAGINSDCEKLNRLADSWG 269

Query: 181 CKVESLPFIYLGLPLGGYRKSARFWQPILDKIHGKLDKWRRYNLSRGGRITLCKSVLSSL 240
           C+V S P  YLGLPLGG  ++ +FW P +DK+  +L  W++  LSRGGR+TL +SVL SL
Sbjct: 270 CEVGSWPIKYLGLPLGGRPRALKFWDPXVDKMEKRLQSWKKAFLSRGGRLTLIQSVLGSL 329

Query: 241 PTYYMSVFLMPESALSSLERIIRKFFWEGNKGGRLNHLVKWDVVIKSYRDGGLSLGKLKH 300
           PTYYMS+F MP   +  LE++++ F WEG + G+ N+LVKW++VIKS  +GGL +G L++
Sbjct: 330 PTYYMSLFKMPCGVIGRLEKLMKGFLWEGVEEGKKNNLVKWEIVIKSKEEGGLGVGNLRN 389

Query: 301 KNMALLSKWGWRFSKEQNSLWCQVIRSIHGSEGSRILFW----------KHPWVDI---- 338
           +N ALL+KW WRF KE +SLW +VIRS +G + +    W          + PW DI    
Sbjct: 390 RNEALLAKWLWRFPKEPHSLWHKVIRSKYGLQDNG---WNAFPPIRGSXRSPWKDISIGS 449

[Close]
BLAST of Cucsa.340440 vs. NCBI nr
Match: gi|657990185|ref|XP_008387315.1| (PREDICTED: uncharacterized protein LOC103449768 [Malus domestica])

HSP 1 Score: 292.7 bits (748), Expect = 9.4e-76
Identity = 156/387 (40.31%), Postives = 227/387 (58.66%), Query Frame = 1 

Query: 1    VEDYIIRKKKGWIIKLDLEKAFDRV--------MRKKNFAEKWILWIMGCIKNPKYSVFI 60
            VE+   +K++G ++K+D EKA+D V        +++K+F  +W  W+ GC+ +  +SV I
Sbjct: 1564 VEEVRQKKEEGLVLKIDFEKAYDHVEWRFLDEVLQRKSFGNRWRKWMQGCLSSANFSVLI 1623

Query: 61   NGRPRGRISAPRGLRQGDPLSPFLFLLVSEVLSSLFSNLHKKEMFEGFVVGKDRVHIPIL 120
            NGRPRG+    RGLRQGDPLSPFLF LV +VLS L     +  + +G  +G+++V I  L
Sbjct: 1624 NGRPRGKFQXSRGLRQGDPLSPFLFTLVVDVLSRLMEKAQENHLIKGLCIGQEKVEIXHL 1683

Query: 121  QFADDTLLFCKYDEEMMENLKKTLLVF--------------------ECKHIN------- 180
            QFADDT+ F    E    NL + L +F                    +C+ +N       
Sbjct: 1684 QFADDTIFFLAXXEGGWNNLLELLKLFCSVSGLKINKAKCYLXGINSDCEKLNRLADSWG 1743

Query: 181  CKVESLPFIYLGLPLGGYRKSARFWQPILDKIHGKLDKWRRYNLSRGGRITLCKSVLSSL 240
            C+V S P  YLGLPLGG  ++ +FW P++DK+  +L  W++  LSRGGR+TL +SVL SL
Sbjct: 1744 CEVGSXPIKYLGLPLGGRPRALKFWDPVVDKMEKRLQSWKKAFLSRGGRLTLIQSVLGSL 1803

Query: 241  PTYYMSVFLMPESALSSLERIIRKFFWEGNKGGRLNHLVKWDVVIKSYRDGGLSLGKLKH 300
            PTYYMS+F MP   +  LE++++ F WEG + G+ N+LVKW++VIKS  +GGL +G L++
Sbjct: 1804 PTYYMSLFKMPCGVIGRLEKLMKGFLWEGVEEGKKNNLVKWEIVIKSKEEGGLGVGNLRN 1863

Query: 301  KNMALLSKWGWRFSKEQNSLWCQVIRSIHGSEGSRILFW----------KHPWVDI---- 338
            +N ALL+KW WRF  E +SLW +VIRS +G + +    W          + PW DI    
Sbjct: 1864 RNEALLAKWLWRFPXEPHSLWHKVIRSKYGLQDNG---WNAFPPIRGSSRSPWKDISIGS 1923

[Close]
BLAST of Cucsa.340440 vs. NCBI nr
Match: gi|694414464|ref|XP_009335445.1| (PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri])

HSP 1 Score: 288.5 bits (737), Expect = 1.8e-74
Identity = 170/476 (35.71%), Postives = 252/476 (52.94%), Query Frame = 1 

Query: 1   VEDYIIRKKKGWIIKLDLEKAFDRV--------MRKKNFAEKWILWIMGCIKNPKYSVFI 60
           VE+   +K++G + K+D EKA+D V        +++K F  +W  W+ GC  +  +S+ I
Sbjct: 385 VEEVRQKKEEGLMFKIDFEKAYDHVEWRFLDEILQRKGFGNRWRKWVQGCQNSANFSILI 444

Query: 61  NGRPRGRISAPRGLRQGDPLSPFLFLLVSEVLSSLFSNLHKKEMFEGFVVGKDRVHIPIL 120
           NGRP+G+  A R LRQGDPLSPFLF LV +VLS L    H+  + +G  +G++RV I  L
Sbjct: 445 NGRPKGKFHASRRLRQGDPLSPFLFTLVVDVLSRLMEKAHENHLIKGLGIGQERVEISHL 504

Query: 121 QFADDTLLFCKYDEEMMENLKKTLLVF--------------------ECKHIN------- 180
           QFADDT+ F   DE++  NL + L +F                    +C+ +        
Sbjct: 505 QFADDTIFFLAEDEDVWNNLLEVLNLFCTISGLKINKAKCSMAGINSDCEKLKGMADSWG 564

Query: 181 CKVESLPFIYLGLPLGGYRKSARFWQPILDKIHGKLDKWRRYNLSRGGRITLCKSVLSSL 240
           C+V S P  YLGLPLGG  K+  FW P+++K+  +L  W++  LS+GGR+TL + VL SL
Sbjct: 565 CEVGSWPIKYLGLPLGGRPKALMFWDPVVEKMEKRLQSWKKAFLSKGGRLTLIQFVLGSL 624

Query: 241 PTYYMSVFLMPESALSSLERIIRKFFWEGNKGGRLNHLVKWDVVIKSYRDGGLSLGKLKH 300
           P YYMS+F +P   +  LE++++ F WEG + G+ NHLVKW++VIKS  +GGL +G L++
Sbjct: 625 PIYYMSLFKIPCGVIGRLEKLMKGFLWEGVEEGKKNHLVKWEIVIKSKEEGGLCVGNLRN 684

Query: 301 KNMALLSKWGWRFSKEQNSLWCQVIRSIHGSEGSRILFW----------KHPWVDIIT-- 360
           +  ALL+KW WRF KE NSLW +VIRS +G + +    W          + PW DI    
Sbjct: 685 QKEALLAKWLWRFPKEPNSLWHKVIRSKYGLQDNG---WNANPPLRGSSRSPWKDISCGL 744

Query: 361 ---LECKSSRLGRIALNPNGSVLDHWDTSTNSW-----------SIYFRRLLNDEEI--- 389
              L+C    +G      NG  +  W+   + W            ++    ++++ I   
Sbjct: 745 QSFLQCCKFEVG------NGERVRFWE---DGWLEGGPLKEQYPRLFLLSRMHNQNISSF 804

[Close]
BLAST of Cucsa.340440 vs. NCBI nr
Match: gi|596230697|ref|XP_007224290.1| (hypothetical protein PRUPE_ppa020085mg, partial [Prunus persica])

HSP 1 Score: 287.3 bits (734), Expect = 4.0e-74
Identity = 167/451 (37.03%), Postives = 246/451 (54.55%), Query Frame = 1 

Query: 1   VEDYIIRKKKGWIIKLDLEKAFDRV--------MRKKNFAEKWILWIMGCIKNPKYSVFI 60
           VE+   +K+KG + K+D EKA+D V        + +K F  KW  WI+GC+++  +S+ I
Sbjct: 543 VEEVRKQKRKGLVFKIDFEKAYDHVEWNFVDDVLVRKGFGAKWRGWIIGCLESVNFSIMI 602

Query: 61  NGRPRGRISAPRGLRQGDPLSPFLFLLVSEVLSSLFSNLHKKEMFEGFVVGKDRVHIPIL 120
           NG+PRG+  A RGLRQGDPLSPFLF LVS+VLS +        +  G V G D+V +  L
Sbjct: 603 NGKPRGKFRASRGLRQGDPLSPFLFTLVSDVLSRIIERAQDVNLVHGIVSGHDQVEVSHL 662

Query: 121 QFADDTLLFCKYDEEMMENLKKTL--------------------LVFECKHIN------- 180
           QFADDT+      EE   NL + L                    + F    +N       
Sbjct: 663 QFADDTIFLLDGKEEYWLNLLQLLKLFCEVSGMKINKAKSCILGINFSTDALNNMAGSWG 722

Query: 181 CKVESLPFIYLGLPLGGYRKSARFWQPILDKIHGKLDKWRRYNLSRGGRITLCKSVLSSL 240
           C+V   P +YLGLPLGG  ++  FW P++DK+  +L KW+R  LS+GGR+TL ++VLSS+
Sbjct: 723 CEVGCWPMVYLGLPLGGNPRALNFWNPVMDKVEKRLQKWKRACLSKGGRLTLIQAVLSSI 782

Query: 241 PTYYMSVFLMPESALSSLERIIRKFFWEGNKGGRLNHLVKWDVVIKSYRDGGLSLGKLKH 300
           P+YYMS+F MP    + +E+++R F WEG + G+  HLV+W+ V KS  +GGL +G L+ 
Sbjct: 783 PSYYMSLFKMPIGVAAKVEQLMRNFLWEGLEDGKNCHLVRWERVTKSKEEGGLGIGSLRE 842

Query: 301 KNMALLSKWGWRFSKEQNSLWCQVIRSIHGSEGS-------RILFWKHPWVDIIT----- 360
           +N AL +KW WRF  E NSLW ++I+S +G + +         +  ++PW +I       
Sbjct: 843 RNEALRAKWLWRFPLEPNSLWHRIIKSKYGIDSNGWDTKQIDKVSCRNPWREISKGYNSF 902

Query: 361 LECKSSRLGRIALNPNGSVLDHWD---------------TSTNSWSIYFRRLLNDEEILD 389
           L+C    +G      NG  +  W+                S+ S     +R L++ EI +
Sbjct: 903 LQCCRFSVG------NGEKIRFWEDFWLKEGILKDLFPRLSSLSRRKKSKRNLSEAEIAE 962

The following BLAST results are available for this feature:
BLAST of Cucsa.340440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RNHX1_ARATH2.1e-2241.01Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 P... [more]
LORF2_HUMAN1.1e-1224.27LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1[more]
LIN1_NYCCO4.8e-1122.78LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=3 SV=1[more]
LORF2_MOUSE2.4e-1023.91LINE-1 retrotransposable element ORF2 protein OS=Mus musculus GN=Pol PE=1 SV=2[more]
M1250_ARATH3.4e-0949.25Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana GN=AtMg0... [more]
BLAST of Cucsa.340440 vs. TrEMBL
Match NameE-valueIdentityDescription
M5XHS0_PRUPE2.8e-7437.03Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020085mg PE=4 S... [more]
A5BV95_VITVI1.4e-7337.47Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026478 PE=4 SV=1[more]
A5BI72_VITVI1.4e-7336.90Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000131 PE=4 SV=1[more]
A5C4H7_VITVI1.4e-7336.90Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009635 PE=4 SV=1[more]
A5AXP7_VITVI5.2e-7336.68Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010897 PE=4 SV=1[more]
BLAST of Cucsa.340440 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG01250.11.9e-1049.25ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)[more]
BLAST of Cucsa.340440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|658030603|ref|XP_008350747.1|1.3e-7741.09PREDICTED: uncharacterized protein LOC103414113 [Malus domestica][more]
gi|658048925|ref|XP_008360144.1|5.0e-7740.83PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica][more]
gi|657990185|ref|XP_008387315.1|9.4e-7640.31PREDICTED: uncharacterized protein LOC103449768 [Malus domestica][more]
gi|694414464|ref|XP_009335445.1|1.8e-7435.71PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri][more]
gi|596230697|ref|XP_007224290.1|4.0e-7437.03hypothetical protein PRUPE_ppa020085mg, partial [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.340440.1Cucsa.340440.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 7..134
score: 4.5
IPR000477Reverse transcriptase domainPROFILEPS50878RT_POLcoord: 1..189
score: 11
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 1..193
score: 3.8
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 5..153
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.340440Melon (DHL92) v3.6.1cgymedB558
Cucsa.340440Melon (DHL92) v3.6.1cgymedB559
Cucsa.340440Cucumber (Chinese Long) v3cgycucB523
Cucsa.340440Watermelon (97103) v2cgywmbB582
Cucsa.340440Wax gourdcgywgoB676
Cucsa.340440Cucurbita moschata (Rifu)cgycmoB0928
Cucsa.340440Wild cucumber (PI 183967)cgycpiB504
Cucsa.340440Cucumber (Chinese Long) v2cgycuB478
Cucsa.340440Melon (DHL92) v3.5.1cgymeB557
Cucsa.340440Melon (DHL92) v3.5.1cgymeB558
Cucsa.340440Watermelon (Charleston Gray)cgywcgB579
Cucsa.340440Watermelon (97103) v1cgywmB609
Cucsa.340440Bottle gourd (USVL1VR-Ls)cgylsiB551