Cucsa.340080 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.340080
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Pentatricopeptide repeat-containing protein
Location	scaffold03356 : 2602528 .. 2602761 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGTGGTTGAAATGTGGCAGCATAGTTAATCCTATGAAAGTATTTAGAGAAATGAAAGTAAAAGAAATAGTTACCTTCGCGAGAATGGCAGGTTGTAGAGTCCAGGGACAAGGAAGAAAAGAGTTGAAACCGTTTGACAAAATGATAGAGATGTCAGAAGTTATGCCCAACCAAGAAACATTTCTCTCATTGTTATCTGCTTGTAGCCATGGCGGTTTATTGAAGAGTGGATAA

mRNA sequence

CTGTGGTTGAAATGTGGCAGCATAGTTAATCCTATGAAAGTATTTAGAGAAATGAAAGTAAAAGAAATAGTTACCTTCGCGAGAATGGCAGGTTGTAGAGTCCAGGGACAAGGAAGAAAAGAGTTGAAACCGTTTGACAAAATGATAGAGATGTCAGAAGTTATGCCCAACCAAGAAACATTTCTCTCATTGTTATCTGCTTGTAGCCATGGCGGTTTATTGAAGAGTGGATAA

Coding sequence (CDS)

CTGTGGTTGAAATGTGGCAGCATAGTTAATCCTATGAAAGTATTTAGAGAAATGAAAGTAAAAGAAATAGTTACCTTCGCGAGAATGGCAGGTTGTAGAGTCCAGGGACAAGGAAGAAAAGAGTTGAAACCGTTTGACAAAATGATAGAGATGTCAGAAGTTATGCCCAACCAAGAAACATTTCTCTCATTGTTATCTGCTTGTAGCCATGGCGGTTTATTGAAGAGTGGATAA

Protein sequence

LWLKCGSIVNPMKVFREMKVKEIVTFARMAGCRVQGQGRKELKPFDKMIEMSEVMPNQETFLSLLSACSHGGLLKSG*

Homology

[Close]

BLAST of Cucsa.340080 vs. Swiss-Prot
Match: PP205_ARATH (Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-12
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 1


Query: 1   LWLKCGSIVNPMKVFREMKVKEIVTFARM-AGCRVQGQGRKELKPFDKMIEMSEVMPNQE 60
           L+ +CGS+ N  KVF  + +K+ V +  +  G  + G+G K L+ F+ M++ SEV PN+ 
Sbjct: 410 LYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEV 469

Query: 61  TFLSLLSACSHGGLLKSG 78
           TFLS+LSACSH GL+  G
Sbjct: 470 TFLSILSACSHAGLIHEG 487

HSP 2 Score: 47.8 bits (112), Expect = 6.5e-05
Identity = 21/70 (30.00%), Postives = 47/70 (67.14%), Query Frame = 1


Query: 1   LWLKCGSIVNPMKVFREMKVKEIVTFARM-AGCRVQGQGRKELKPFDKMIEMSEVMPNQE 60
           +++KCG ++  +++F E++  +IVT++ M +G    G   + ++ F +M+  S+V P++ 
Sbjct: 105 MYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRV 164

Query: 61  TFLSLLSACS 70
           T ++L+SAC+
Sbjct: 165 TLITLVSACT 174

[Close]

BLAST of Cucsa.340080 vs. Swiss-Prot
Match: PP286_ARATH (Pentatricopeptide repeat-containing protein At3g58590 OS=Arabidopsis thaliana GN=At3g58590 PE=2 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 7.4e-09
Identity = 28/75 (37.33%), Postives = 49/75 (65.33%), Query Frame = 1


Query: 4   KCGSIVNPMKVFREMKVKEIVTFARMAGC-RVQGQGRKELKPFDKMIEMSEVMPNQETFL 63
           KCGSI + MKVF E + K ++T+  +  C  + G G++ L+ F + + +    P++ +F+
Sbjct: 593 KCGSIRSVMKVFEETREKNLITWTALISCLGIHGYGQEALEKFKETLSLG-FKPDRVSFI 652

Query: 64  SLLSACSHGGLLKSG 78
           S+L+AC HGG++K G
Sbjct: 653 SILTACRHGGMVKEG 666

[Close]

BLAST of Cucsa.340080 vs. Swiss-Prot
Match: PP386_ARATH (Pentatricopeptide repeat-containing protein At5g15340, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.4e-09
Identity = 32/78 (41.03%), Postives = 50/78 (64.10%), Query Frame = 1


Query: 1   LWLKCGSIVNPMKVFREMKVKEIVTF-ARMAGCRVQGQGRKELKPFDKMIEMSEVMPNQE 60
           ++ KCG+I + M VFR M+ + +VT+ A  +G  + G+GR  +  F +MI   EV P+  
Sbjct: 295 MYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIR--EVKPDDL 354

Query: 61  TFLSLLSACSHGGLLKSG 78
           TF ++LSACSH G++  G
Sbjct: 355 TFTAVLSACSHSGIVDEG 370

[Close]

BLAST of Cucsa.340080 vs. Swiss-Prot
Match: PP448_ARATH (Pentatricopeptide repeat-containing protein At5g66500, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E38 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.8e-08
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 1


Query: 4   KCGSIVNPMKVFREMKVKEIVTFARMAGC-RVQGQGRKELKPFDKMIEM-SEVMPNQETF 63
           KCG IV    +FR +  K +V++  M     V G G K L+ F +M E  S V+PN  TF
Sbjct: 328 KCGQIVQARTIFRAIPSKSVVSWTSMIDAYAVNGDGVKALEIFREMCEEGSGVLPNSVTF 387

Query: 64  LSLLSACSHGGLLKSG 78
           L ++SAC+H GL+K G
Sbjct: 388 LVVISACAHAGLVKEG 403

[Close]

BLAST of Cucsa.340080 vs. Swiss-Prot
Match: PP284_ARATH (Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.7e-08
Identity = 33/78 (42.31%), Postives = 47/78 (60.26%), Query Frame = 1


Query: 1   LWLKCGSIVNPMKVFREMKVKEIVTFARMA-GCRVQGQGRKELKPFDKMIEMSEVMPNQE 60
           ++ KCGS+ N + VF  M+ ++++T+  M  G  V G G + +  F KM+  S V PN  
Sbjct: 252 MYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVA-SGVRPNAI 311

Query: 61  TFLSLLSACSHGGLLKSG 78
           TFL LL  CSH GL+K G
Sbjct: 312 TFLGLLLGCSHQGLVKEG 328

[Close]

BLAST of Cucsa.340080 vs. TrEMBL
Match: A0A0A0LFK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G840360 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.5e-19
Identity = 52/78 (66.67%), Postives = 64/78 (82.05%), Query Frame = 1


Query: 1   LWLKCGSIVNPMKVFREMKVKEIVTF-ARMAGCRVQGQGRKELKPFDKMIEMSEVMPNQE 60
           L+ KCG+IVN MKVF  +KVK+IVT+ A +AG  +QGQGR+ LK F+KMIE SEVMPN+ 
Sbjct: 362 LYSKCGNIVNAMKVFEGLKVKDIVTWSAIIAGYGIQGQGREALKLFNKMIETSEVMPNEV 421

Query: 61  TFLSLLSACSHGGLLKSG 78
           TFLSLLSACSH GL++ G
Sbjct: 422 TFLSLLSACSHAGLIEEG 439

[Close]

BLAST of Cucsa.340080 vs. TrEMBL
Match: A0A118K5K9_CYNCS (Pentatricopeptide repeat-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_012361 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.8e-12
Identity = 37/75 (49.33%), Postives = 55/75 (73.33%), Query Frame = 1


Query: 4   KCGSIVNPMKVFREMKVKEIVTFARM-AGCRVQGQGRKELKPFDKMIEMSEVMPNQETFL 63
           KCGS+ N +KVF+ +  K++V ++ M AG  + G+GR+ L+ FD M+++S + PN  TFL
Sbjct: 453 KCGSLCNAIKVFKGIDHKDVVIWSSMIAGYGIHGKGREALELFDYMVKISTIKPNNVTFL 512

Query: 64  SLLSACSHGGLLKSG 78
           S+LSACSH GL+K G
Sbjct: 513 SILSACSHAGLIKEG 527

[Close]

BLAST of Cucsa.340080 vs. TrEMBL
Match: A0A118K5K9_CYNCS (Pentatricopeptide repeat-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_012361 PE=4 SV=1)

HSP 1 Score: 43.1 bits (100), Expect = 1.8e-01
Identity = 25/77 (32.47%), Postives = 41/77 (53.25%), Query Frame = 1


Query: 2   WLKCGSIVNPMKVFREMKVKEIVTFARMAGCRV-QGQGRKELKPFDKMIEMSEVMPNQET 61
           ++KCG +     +FREMK ++I+++A M  C    G   + L  F++M+    V  N  +
Sbjct: 249 YVKCGCVSAAAMLFREMKQRDIISWASMISCYAHNGAADEALNLFNEMMRKG-VEANSVS 308

Query: 62  FLSLLSACSHGGLLKSG 78
            +S L AC   G L+ G
Sbjct: 309 VISALQACEATGNLEEG 324

HSP 2 Score: 75.9 bits (185), Expect = 2.5e-11
Identity = 36/78 (46.15%), Postives = 55/78 (70.51%), Query Frame = 1


Query: 1   LWLKCGSIVNPMKVFREMKVKEIVTFARM-AGCRVQGQGRKELKPFDKMIEMSEVMPNQE 60
           L+ +CGS+ +  KVF E+ +K++V +  +  G  + G+G K L+ F++M+E SEV PN+ 
Sbjct: 324 LYSRCGSLGSACKVFDEITLKDVVVWTSLITGYGIHGKGTKALETFNQMVESSEVEPNEV 383

Query: 61  TFLSLLSACSHGGLLKSG 78
           TFLS+LSACSH GL+  G
Sbjct: 384 TFLSVLSACSHSGLIHEG 401

[Close]

BLAST of Cucsa.340080 vs. TrEMBL
Match: A0A0D3B993_BRAOL (Oleosin OS=Brassica oleracea var. oleracea PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.2e-11
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 1


Query: 1   LWLKCGSIVNPMKVFREMKVKEIVTFARM-AGCRVQGQGRKELKPFDKMIEMSEVMPNQE 60
           L+ +CGS+ +  KVF E+ +K++V +  +  G  + G+G K L+ F +M+E SEV PN+ 
Sbjct: 392 LYSRCGSLGSACKVFDEITLKDVVVWTSLITGYGIHGKGTKALETFTQMVESSEVEPNEV 451

Query: 61  TFLSLLSACSHGGLLKSG 78
           TFLS+LSACSH GL+  G
Sbjct: 452 TFLSVLSACSHSGLIHEG 469

[Close]

BLAST of Cucsa.340080 vs. TrEMBL
Match: A0A078DRM6_BRANA (BnaC03g32430D protein OS=Brassica napus GN=BnaC03g32430D PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.2e-11
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 1


Query: 1   LWLKCGSIVNPMKVFREMKVKEIVTFARM-AGCRVQGQGRKELKPFDKMIEMSEVMPNQE 60
           L+ +CGS+ +  KVF E+ +K++V +  +  G  + G+G K L+ F +M+E SEV PN+ 
Sbjct: 324 LYSRCGSLGSACKVFDEITLKDVVVWTSLITGYGIHGKGTKALETFTQMVESSEVEPNEV 383

Query: 61  TFLSLLSACSHGGLLKSG 78
           TFLS+LSACSH GL+  G
Sbjct: 384 TFLSVLSACSHSGLIHEG 401

[Close]

BLAST of Cucsa.340080 vs. TAIR10
Match: AT3G01580.1 (AT3G01580.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-13
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 1


Query: 1   LWLKCGSIVNPMKVFREMKVKEIVTFARM-AGCRVQGQGRKELKPFDKMIEMSEVMPNQE 60
           L+ +CGS+ N  KVF  + +K+ V +  +  G  + G+G K L+ F+ M++ SEV PN+ 
Sbjct: 410 LYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEV 469

Query: 61  TFLSLLSACSHGGLLKSG 78
           TFLS+LSACSH GL+  G
Sbjct: 470 TFLSILSACSHAGLIHEG 487

HSP 2 Score: 47.8 bits (112), Expect = 3.7e-06
Identity = 21/70 (30.00%), Postives = 47/70 (67.14%), Query Frame = 1


Query: 1   LWLKCGSIVNPMKVFREMKVKEIVTFARM-AGCRVQGQGRKELKPFDKMIEMSEVMPNQE 60
           +++KCG ++  +++F E++  +IVT++ M +G    G   + ++ F +M+  S+V P++ 
Sbjct: 105 MYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRV 164

Query: 61  TFLSLLSACS 70
           T ++L+SAC+
Sbjct: 165 TLITLVSACT 174

[Close]

BLAST of Cucsa.340080 vs. TAIR10
Match: AT3G58590.1 (AT3G58590.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 4.2e-10
Identity = 28/75 (37.33%), Postives = 49/75 (65.33%), Query Frame = 1


Query: 4   KCGSIVNPMKVFREMKVKEIVTFARMAGC-RVQGQGRKELKPFDKMIEMSEVMPNQETFL 63
           KCGSI + MKVF E + K ++T+  +  C  + G G++ L+ F + + +    P++ +F+
Sbjct: 593 KCGSIRSVMKVFEETREKNLITWTALISCLGIHGYGQEALEKFKETLSLG-FKPDRVSFI 652

Query: 64  SLLSACSHGGLLKSG 78
           S+L+AC HGG++K G
Sbjct: 653 SILTACRHGGMVKEG 666

[Close]

BLAST of Cucsa.340080 vs. TAIR10
Match: AT5G15340.1 (AT5G15340.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 4.2e-10
Identity = 32/78 (41.03%), Postives = 50/78 (64.10%), Query Frame = 1


Query: 1   LWLKCGSIVNPMKVFREMKVKEIVTF-ARMAGCRVQGQGRKELKPFDKMIEMSEVMPNQE 60
           ++ KCG+I + M VFR M+ + +VT+ A  +G  + G+GR  +  F +MI   EV P+  
Sbjct: 295 MYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIR--EVKPDDL 354

Query: 61  TFLSLLSACSHGGLLKSG 78
           TF ++LSACSH G++  G
Sbjct: 355 TFTAVLSACSHSGIVDEG 370

[Close]

BLAST of Cucsa.340080 vs. TAIR10
Match: AT5G66500.1 (AT5G66500.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-09
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 1


Query: 4   KCGSIVNPMKVFREMKVKEIVTFARMAGC-RVQGQGRKELKPFDKMIEM-SEVMPNQETF 63
           KCG IV    +FR +  K +V++  M     V G G K L+ F +M E  S V+PN  TF
Sbjct: 328 KCGQIVQARTIFRAIPSKSVVSWTSMIDAYAVNGDGVKALEIFREMCEEGSGVLPNSVTF 387

Query: 64  LSLLSACSHGGLLKSG 78
           L ++SAC+H GL+K G
Sbjct: 388 LVVISACAHAGLVKEG 403

[Close]

BLAST of Cucsa.340080 vs. TAIR10
Match: AT3G56550.1 (AT3G56550.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-09
Identity = 33/78 (42.31%), Postives = 47/78 (60.26%), Query Frame = 1


Query: 1   LWLKCGSIVNPMKVFREMKVKEIVTFARMA-GCRVQGQGRKELKPFDKMIEMSEVMPNQE 60
           ++ KCGS+ N + VF  M+ ++++T+  M  G  V G G + +  F KM+  S V PN  
Sbjct: 252 MYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVA-SGVRPNAI 311

Query: 61  TFLSLLSACSHGGLLKSG 78
           TFL LL  CSH GL+K G
Sbjct: 312 TFLGLLLGCSHQGLVKEG 328

[Close]

BLAST of Cucsa.340080 vs. NCBI nr
Match: gi|659129955|ref|XP_008464928.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-19
Identity = 53/78 (67.95%), Postives = 65/78 (83.33%), Query Frame = 1


Query: 1   LWLKCGSIVNPMKVFREMKVKEIVTF-ARMAGCRVQGQGRKELKPFDKMIEMSEVMPNQE 60
           L+ KCG+IVN MKVF E+KVK+IVT+ A +AG  +QGQGR+ LK F+KMIE SEVMPN+ 
Sbjct: 456 LYSKCGNIVNAMKVFEELKVKDIVTWSAIIAGYGIQGQGREALKLFNKMIETSEVMPNEV 515

Query: 61  TFLSLLSACSHGGLLKSG 78
           TFLSLLSACSH GL++ G
Sbjct: 516 TFLSLLSACSHAGLIEEG 533

[Close]

BLAST of Cucsa.340080 vs. NCBI nr
Match: gi|778685923|ref|XP_011652303.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 7.9e-19
Identity = 52/78 (66.67%), Postives = 64/78 (82.05%), Query Frame = 1


Query: 1   LWLKCGSIVNPMKVFREMKVKEIVTF-ARMAGCRVQGQGRKELKPFDKMIEMSEVMPNQE 60
           L+ KCG+IVN MKVF  +KVK+IVT+ A +AG  +QGQGR+ LK F+KMIE SEVMPN+ 
Sbjct: 456 LYSKCGNIVNAMKVFEGLKVKDIVTWSAIIAGYGIQGQGREALKLFNKMIETSEVMPNEV 515

Query: 61  TFLSLLSACSHGGLLKSG 78
           TFLSLLSACSH GL++ G
Sbjct: 516 TFLSLLSACSHAGLIEEG 533

[Close]

BLAST of Cucsa.340080 vs. NCBI nr
Match: gi|700204576|gb|KGN59709.1| (hypothetical protein Csa_3G840360 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 7.9e-19
Identity = 52/78 (66.67%), Postives = 64/78 (82.05%), Query Frame = 1


Query: 1   LWLKCGSIVNPMKVFREMKVKEIVTF-ARMAGCRVQGQGRKELKPFDKMIEMSEVMPNQE 60
           L+ KCG+IVN MKVF  +KVK+IVT+ A +AG  +QGQGR+ LK F+KMIE SEVMPN+ 
Sbjct: 362 LYSKCGNIVNAMKVFEGLKVKDIVTWSAIIAGYGIQGQGREALKLFNKMIETSEVMPNEV 421

Query: 61  TFLSLLSACSHGGLLKSG 78
           TFLSLLSACSH GL++ G
Sbjct: 422 TFLSLLSACSHAGLIEEG 439

[Close]

BLAST of Cucsa.340080 vs. NCBI nr
Match: gi|976925348|gb|KVI09257.1| (Pentatricopeptide repeat-containing protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 78.6 bits (192), Expect = 5.5e-12
Identity = 37/75 (49.33%), Postives = 55/75 (73.33%), Query Frame = 1


Query: 4   KCGSIVNPMKVFREMKVKEIVTFARM-AGCRVQGQGRKELKPFDKMIEMSEVMPNQETFL 63
           KCGS+ N +KVF+ +  K++V ++ M AG  + G+GR+ L+ FD M+++S + PN  TFL
Sbjct: 453 KCGSLCNAIKVFKGIDHKDVVIWSSMIAGYGIHGKGREALELFDYMVKISTIKPNNVTFL 512

Query: 64  SLLSACSHGGLLKSG 78
           S+LSACSH GL+K G
Sbjct: 513 SILSACSHAGLIKEG 527

[Close]

BLAST of Cucsa.340080 vs. NCBI nr
Match: gi|976925348|gb|KVI09257.1| (Pentatricopeptide repeat-containing protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 43.1 bits (100), Expect = 2.6e-01
Identity = 25/77 (32.47%), Postives = 41/77 (53.25%), Query Frame = 1


Query: 2   WLKCGSIVNPMKVFREMKVKEIVTFARMAGCRV-QGQGRKELKPFDKMIEMSEVMPNQET 61
           ++KCG +     +FREMK ++I+++A M  C    G   + L  F++M+    V  N  +
Sbjct: 249 YVKCGCVSAAAMLFREMKQRDIISWASMISCYAHNGAADEALNLFNEMMRKG-VEANSVS 308

Query: 62  FLSLLSACSHGGLLKSG 78
            +S L AC   G L+ G
Sbjct: 309 VISALQACEATGNLEEG 324

HSP 2 Score: 77.8 bits (190), Expect = 9.4e-12
Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 1


Query: 1   LWLKCGSIVNPMKVFREMKVKEIVTFARM-AGCRVQGQGRKELKPFDKMIEMSEVMPNQE 60
           L+ KCGSI    ++F E+K K++V ++ M AG  V GQG + LK FDKM++ S V PN  
Sbjct: 455 LYSKCGSIDIANRLFEEIKDKDVVIWSAMIAGYGVHGQGVEALKVFDKMVKHSAVKPNDV 514

Query: 61  TFLSLLSACSHGGLLKSG 78
           TFLS+LSACSH GL++ G
Sbjct: 515 TFLSVLSACSHSGLVEEG 532

The following BLAST results are available for this feature:

BLAST of Cucsa.340080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP205_ARATH	1.9e-12	44.87	Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis th...	[more]
PP286_ARATH	7.4e-09	37.33	Pentatricopeptide repeat-containing protein At3g58590 OS=Arabidopsis thaliana GN...	[more]
PP386_ARATH	7.4e-09	41.03	Pentatricopeptide repeat-containing protein At5g15340, mitochondrial OS=Arabidop...	[more]
PP448_ARATH	2.8e-08	43.42	Pentatricopeptide repeat-containing protein At5g66500, mitochondrial OS=Arabidop...	[more]
PP284_ARATH	3.7e-08	42.31	Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana GN...	[more]

BLAST of Cucsa.340080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFK2_CUCSA	5.5e-19	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G840360 PE=4 SV=1	[more]
A0A118K5K9_CYNCS	3.8e-12	49.33	Pentatricopeptide repeat-containing protein OS=Cynara cardunculus var. scolymus ...	[more]
A0A118K5K9_CYNCS	1.8e-01	32.47	Pentatricopeptide repeat-containing protein OS=Cynara cardunculus var. scolymus ...	[more]
A0A0D3B993_BRAOL	4.2e-11	46.15	Oleosin OS=Brassica oleracea var. oleracea PE=3 SV=1	[more]
A0A078DRM6_BRANA	4.2e-11	46.15	BnaC03g32430D protein OS=Brassica napus GN=BnaC03g32430D PE=4 SV=1	[more]

BLAST of Cucsa.340080 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01580.1	1.1e-13	44.87	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G58590.1	4.2e-10	37.33	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G15340.1	4.2e-10	41.03	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G66500.1	1.6e-09	43.42	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G56550.1	2.1e-09	42.31	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Cucsa.340080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659129955\|ref\|XP_008464928.1\|	1.2e-19	67.95	PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Cucum...	[more]
gi\|778685923\|ref\|XP_011652303.1\|	7.9e-19	66.67	PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Cucum...	[more]
gi\|700204576\|gb\|KGN59709.1\|	7.9e-19	66.67	hypothetical protein Csa_3G840360 [Cucumis sativus]	[more]
gi\|976925348\|gb\|KVI09257.1\|	5.5e-12	49.33	Pentatricopeptide repeat-containing protein [Cynara cardunculus var. scolymus]	[more]
gi\|976925348\|gb\|KVI09257.1\|	2.6e-01	32.47	Pentatricopeptide repeat-containing protein [Cynara cardunculus var. scolymus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.340080.1	Cucsa.340080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 4..77 score: 1.4
None	No IPR available	PANTHER	PTHR24015:SF109	SUBFAMILY NOT NAMED	coord: 4..77 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.340080	Cucumber (Chinese Long) v3	cgycucB520
Cucsa.340080	Cucumber (Chinese Long) v3	cgycucB523
Cucsa.340080	Cucumber (Chinese Long) v3	cgycucB524
Cucsa.340080	Watermelon (97103) v2	cgywmbB582
Cucsa.340080	Watermelon (97103) v2	cgywmbB591
Cucsa.340080	Wax gourd	cgywgoB676
Cucsa.340080	Wax gourd	cgywgoB679
Cucsa.340080	Cucumber (Gy14) v1	cgycgyB111
Cucsa.340080	Cucurbita maxima (Rimu)	cgycmaB0931
Cucsa.340080	Cucurbita maxima (Rimu)	cgycmaB0922
Cucsa.340080	Cucurbita maxima (Rimu)	cgycmaB0926
Cucsa.340080	Cucurbita maxima (Rimu)	cgycmaB0939
Cucsa.340080	Cucurbita moschata (Rifu)	cgycmoB0923
Cucsa.340080	Cucurbita moschata (Rifu)	cgycmoB0926
Cucsa.340080	Cucurbita moschata (Rifu)	cgycmoB0939
Cucsa.340080	Wild cucumber (PI 183967)	cgycpiB504
Cucsa.340080	Wild cucumber (PI 183967)	cgycpiB506
Cucsa.340080	Cucumber (Chinese Long) v2	cgycuB475
Cucsa.340080	Cucumber (Chinese Long) v2	cgycuB478
Cucsa.340080	Cucumber (Chinese Long) v2	cgycuB480
Cucsa.340080	Melon (DHL92) v3.5.1	cgymeB549
Cucsa.340080	Melon (DHL92) v3.5.1	cgymeB554
Cucsa.340080	Melon (DHL92) v3.5.1	cgymeB558
Cucsa.340080	Watermelon (Charleston Gray)	cgywcgB577
Cucsa.340080	Watermelon (Charleston Gray)	cgywcgB579
Cucsa.340080	Watermelon (Charleston Gray)	cgywcgB587
Cucsa.340080	Watermelon (97103) v1	cgywmB607
Cucsa.340080	Watermelon (97103) v1	cgywmB609
Cucsa.340080	Cucurbita pepo (Zucchini)	cgycpeB0883
Cucsa.340080	Cucurbita pepo (Zucchini)	cgycpeB0888
Cucsa.340080	Cucurbita pepo (Zucchini)	cgycpeB0894
Cucsa.340080	Bottle gourd (USVL1VR-Ls)	cgylsiB549
Cucsa.340080	Bottle gourd (USVL1VR-Ls)	cgylsiB551
Cucsa.340080	Melon (DHL92) v3.6.1	cgymedB559
Cucsa.340080	Silver-seed gourd	carcgyB0320
Cucsa.340080	Silver-seed gourd	carcgyB0429
Cucsa.340080	Silver-seed gourd	carcgyB0506
Cucsa.340080	Silver-seed gourd	carcgyB0770