Cucsa.334590 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.334590
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Locationscaffold03312 : 59784 .. 60372 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCTGGTACAGAATAAACAGCCAATTGCTTATTACAGCCATACTTTGGTAGTCAGAGATAGGGCTAAACCGGTATATGAGAGGGAATTGATGGCAGTGGTCATGGCAGTACAGAGGTGGCGTCCTTATTTGTTGGGGAGAAAATTCTTGGTCAAGACTGACCAAAGATCACTTAAGTTCTTGTTGGAACAGAGGGTGATTCAGCCTCAATATCAAAAGTGGATATCCAAACTTCTTGGGTATCGTTTGAAGTGATATATAAGCTAGGGCTTGAGAATAAAGCTGCTGATGCCTTGGCTAGAATGCCACCTACGGTTCATTTTAATCAGTTAACAGCCCCAAACATAATTGATGTGCTACTTATCAAAGAGGAGGTGAACAATGATGAGAAGTTGCAGAAAATCAAGGAAGAGTTAGAAGGGAAGAGAGGGGATCAAAATAGCAATTTCTCAGTAAAACGGAGCATGTTGATGTATAAAGATCGAATGGTGATATCTAAGACGTCCAAATTAATTCCTATGATTTTACATACGTACCATGACTCAGTATTTGGAGGACATTCGGGATTTTACGTACTTATAAAAGATTGA

mRNA sequence

tgctggtacagaataaacagccaattgcttattacagccatactttggtagtcagagatagggctaaaccggtatatgagagggaattgatggcagtggtcatggcagtacagaggtggcgtccttatttgttggggagaaaattcttggtcaagactgaccaaagatcacttaagttcttgttggaacagaggctagggcttgagaataaagctgctgatgccttggctagaatgccacctacggttcattttaatcagttaacagccccaaacataattgatgtgctacttatcaaagaggaggtgaacaatgatgagaagttgcagaaaatcaaggaagagttagaagggaagagaggggatcaaaatagcaatttctcagtaaaacggagcatgttgatgtataaagatcgaatggtgatatctaagacgtccaaattaattcctatgattttacatacgtaccatgactcagtatttggaggacattcgggattttacgtacttataaaagattga

Coding sequence (CDS)

TGCTGGTACAGAATAAACAGCCAATTGCTTATTACAGCCATACTTTGGTAGTCAGAGATAGGGCTAAACCGGTATATGAGAGGGAATTGATGGCAGTGGTCATGGCAGTACAGAGGTGGCGTCCTTATTTGTTGGGGAGAAAATTCTTGGTCAAGACTGACCAAAGATCACTTAAGTTCTTGTTGGAACAGAGGCTAGGGCTTGAGAATAAAGCTGCTGATGCCTTGGCTAGAATGCCACCTACGGTTCATTTTAATCAGTTAACAGCCCCAAACATAATTGATGTGCTACTTATCAAAGAGGAGGTGAACAATGATGAGAAGTTGCAGAAAATCAAGGAAGAGTTAGAAGGGAAGAGAGGGGATCAAAATAGCAATTTCTCAGTAAAACGGAGCATGTTGATGTATAAAGATCGAATGGTGATATCTAAGACGTCCAAATTAATTCCTATGATTTTACATACGTACCATGACTCAGTATTTGGAGGACATTCGGGATTTTACGTACTTATAAAAGATTGA

Protein sequence

LVQNKQPIAYYSHTLVVRDRAKPVYERELMAVVMAVQRWRPYLLGRKFLVKTDQRSLKFLLEQRLGLENKAADALARMPPTVHFNQLTAPNIIDVLLIKEEVNNDEKLQKIKEELEGKRGDQNSNFSVKRSMLMYKDRMVISKTSKLIPMILHTYHDSVFGGHSGFYVLIKD*
Homology
[Close]
BLAST of Cucsa.334590 vs. Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.6e-06
Identity = 33/101 (32.67%), Postives = 51/101 (50.50%), Query Frame = 1 

Query: 1   LVQNKQPIAYYSHTLVVRDRAKPVYERELMAVVMAVQRWRPYLLGRKFLVKTDQRSLKFL 60
           L QN  PI++ S TL   +      E+EL+A+V A + +R YLLGR+FL+ +D + L++L
Sbjct: 523 LSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWL 582

Query: 61  -----------------------LEQRLGLENKAADALARM 79
                                  ++   G EN  ADAL+R+
Sbjct: 583 HNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSRI 623

[Close]
BLAST of Cucsa.334590 vs. TrEMBL
Match: A5B2I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.9e-36
Identity = 88/194 (45.36%), Postives = 116/194 (59.79%), Query Frame = 1 

Query: 1    LVQNKQPIAYYSHTLVVRDRAKPVYERELMAVVMAVQRWRPYLLGRKFLVKTDQRSLKFL 60
            L+Q+ +P+AY+S  L  R+R K +YERELMA+V+AVQ+WR YLLGR F+V+TDQ SLKFL
Sbjct: 1549 LMQSHRPVAYFSQVLTARERQKSIYERELMAIVLAVQKWRHYLLGRHFIVRTDQSSLKFL 1608

Query: 61   LEQRL-----------------------GLENKAADALARMPPTVHFNQLTAPNIIDVLL 120
            LEQR+                       G ENKAADAL+R+P ++    L  P+ ID  L
Sbjct: 1609 LEQRIVNESYQKWVAKLFGYDFEIQFRPGXENKAADALSRIPISMELXALMVPSRIDTXL 1668

Query: 121  IKEEVNNDEKLQKIKEELEGKRGDQNSNFSVKRSMLMYKDRMVISKTSKLIPMILHTYHD 172
            I  +V  D  L KIK+ L     D    +S+   +L+YK R+V+ K S L+P +L   H 
Sbjct: 1669 ISSQVEADPHLXKIKQRLLXD-PDAYPRYSLDHGILLYKGRLVLPKASPLVPALLQEGHA 1728

[Close]
BLAST of Cucsa.334590 vs. TrEMBL
Match: A0A087HNU2_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G173500 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.1e-33
Identity = 83/188 (44.15%), Postives = 111/188 (59.04%), Query Frame = 1 

Query: 1   LVQNKQPIAYYSHTLVVRDRAKPVYERELMAVVMAVQRWRPYLLGRKFLVKTDQRSLKFL 60
           L+Q +QPIAY+S  L  R R K VYERELMA+V A+Q+W+ YLLGRKF+VKTDQ+SLKFL
Sbjct: 31  LMQQQQPIAYFSQALTERQRLKSVYERELMAIVFAIQKWKHYLLGRKFIVKTDQKSLKFL 90

Query: 61  LEQR-----------------------LGLENKAADALARMPPTVHFNQLTAPNIIDVLL 120
           LEQR                        GLENKAADAL+R+        L+ P  I +  
Sbjct: 91  LEQREINLEYQRWLTKILGFDFEIQYKPGLENKAADALSRIDAVPQLCALSMPVAIQLAE 150

Query: 121 IKEEVNNDEKLQKIKEELEGKRGDQNSNFSVKRSMLMYKDRMVISKTSKLIPMILHTYHD 166
           + E V  D +L K+K+E+  K    + +FSV +  L+ K R+V+   S L+ ++L  +HD
Sbjct: 151 VDEAVEKDAELSKLKQEVM-KDATSHPDFSVVQGRLLRKGRLVLPAASPLVKLVLQEFHD 210

[Close]
BLAST of Cucsa.334590 vs. TrEMBL
Match: A0A087G0A8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AAs43195U000200 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 6.7e-33
Identity = 85/186 (45.70%), Postives = 113/186 (60.75%), Query Frame = 1 

Query: 1    LVQNKQPIAYYSHTLVVRDRAKPVYERELMAVVMAVQRWRPYLLGRKFLVKTDQRSLKFL 60
            L+Q ++PIAYYS  L  R + K VYERELMA+V A+QRWR YLLGRKFLV+TDQ+SLKFL
Sbjct: 895  LMQQQRPIAYYSQALTDRQKLKSVYERELMAIVFAIQRWRHYLLGRKFLVRTDQKSLKFL 954

Query: 61   LEQR-----------------------LGLENKAADALARMPPTVHFNQLTAPNIIDVLL 120
            LEQR                        GLENKAADAL+R         L+ P  I + +
Sbjct: 955  LEQREVNTEYQQWLTKILGFDFDIVYKPGLENKAADALSRREVMPQLFALSVPAAIQLEM 1014

Query: 121  IKEEVNNDEKLQKIKEELEGKRGDQNSNFSVKRSMLMYKDRMVISKTSKLIPMILHTYHD 164
            I  EV+ D + +KIKEE+ G   D +  +SV +  L+ + ++VI K S L+ ++LH +H 
Sbjct: 1015 ITAEVDKDAESRKIKEEVLGD-VDAHPGYSVVQGRLLKQGKLVIPKASPLVGVLLHEFHS 1074

[Close]
BLAST of Cucsa.334590 vs. TrEMBL
Match: A0A087G3S6_ARAAL (Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AAs46225U000100 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-32
Identity = 83/188 (44.15%), Postives = 115/188 (61.17%), Query Frame = 1 

Query: 1    LVQNKQPIAYYSHTLVVRDRAKPVYERELMAVVMAVQRWRPYLLGRKFLVKTDQRSLKFL 60
            L+Q+++P+AY+S  L  R R K VYERELMA+V A+Q+WR YLLGRKF+V+TDQ+SLKFL
Sbjct: 952  LMQSQRPLAYFSQALTERQRLKSVYERELMAIVFAIQKWRHYLLGRKFVVRTDQKSLKFL 1011

Query: 61   LEQR-----------------------LGLENKAADALARMPPTVHFNQLTAPNIIDVLL 120
            LEQR                        GLENKAADAL+R    +    L+ P  I +  
Sbjct: 1012 LEQREINMEYQKWLTKLLGFDFEIQYKPGLENKAADALSRKDMALQLCALSIPAAIQLEQ 1071

Query: 121  IKEEVNNDEKLQKIKEELEGKRGDQNSNFSVKRSMLMYKDRMVISKTSKLIPMILHTYHD 166
            I  EV+ND  L+K+KEE+  +    +S FSV +  L+ K ++V+   S+L+ +IL  +H+
Sbjct: 1072 INTEVDNDPDLRKLKEEVL-QDAASHSEFSVVQGRLLRKGKLVVPAQSRLVNVILQEFHN 1131

[Close]
BLAST of Cucsa.334590 vs. TrEMBL
Match: A0A087H2T8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G124900 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-32
Identity = 85/188 (45.21%), Postives = 115/188 (61.17%), Query Frame = 1 

Query: 1   LVQNKQPIAYYSHTLVVRDRAKPVYERELMAVVMAVQRWRPYLLGRKFLVKTDQRSLKFL 60
           L+Q ++PIA++S  L  R + K VYERELMA+V+A+QRWR YLLGRKFLV+TDQ+SLKFL
Sbjct: 397 LMQQQKPIAFFSQALTDRQKLKSVYERELMAIVLAIQRWRHYLLGRKFLVRTDQKSLKFL 456

Query: 61  LEQR-----------------------LGLENKAADALARMPPTVHFNQLTAPNIIDVLL 120
           LEQR                        GLENKAADAL+R         L+ P  I + +
Sbjct: 457 LEQREVNAEYQQWLTKILGFDFDIVYKPGLENKAADALSRREGVPQLFALSIPGAIQLDM 516

Query: 121 IKEEVNNDEKLQKIKEELEGKRGDQNSNFSVKRSMLMYKDRMVISKTSKLIPMILHTYHD 166
           I+ EV+ D +L KIK E+    G  +  FSV +  L+ + ++VI K+S L+ ++LH +H 
Sbjct: 517 IQTEVDKDMELSKIKAEVLQNVG-LHPEFSVVQGRLLKQGKLVIPKSSILVRVLLHEFHS 576

[Close]
BLAST of Cucsa.334590 vs. NCBI nr
Match: gi|147854459|emb|CAN78588.1| (hypothetical protein VITISV_043911 [Vitis vinifera])

HSP 1 Score: 159.1 bits (401), Expect = 7.1e-36
Identity = 88/194 (45.36%), Postives = 116/194 (59.79%), Query Frame = 1 

Query: 1    LVQNKQPIAYYSHTLVVRDRAKPVYERELMAVVMAVQRWRPYLLGRKFLVKTDQRSLKFL 60
            L+Q+ +P+AY+S  L  R+R K +YERELMA+V+AVQ+WR YLLGR F+V+TDQ SLKFL
Sbjct: 1549 LMQSHRPVAYFSQVLTARERQKSIYERELMAIVLAVQKWRHYLLGRHFIVRTDQSSLKFL 1608

Query: 61   LEQRL-----------------------GLENKAADALARMPPTVHFNQLTAPNIIDVLL 120
            LEQR+                       G ENKAADAL+R+P ++    L  P+ ID  L
Sbjct: 1609 LEQRIVNESYQKWVAKLFGYDFEIQFRPGXENKAADALSRIPISMELXALMVPSRIDTXL 1668

Query: 121  IKEEVNNDEKLQKIKEELEGKRGDQNSNFSVKRSMLMYKDRMVISKTSKLIPMILHTYHD 172
            I  +V  D  L KIK+ L     D    +S+   +L+YK R+V+ K S L+P +L   H 
Sbjct: 1669 ISSQVEADPHLXKIKQRLLXD-PDAYPRYSLDHGILLYKGRLVLPKASPLVPALLQEGHA 1728

[Close]
BLAST of Cucsa.334590 vs. NCBI nr
Match: gi|922559973|ref|XP_013608212.1| (PREDICTED: uncharacterized protein LOC106314967 [Brassica oleracea var. oleracea])

HSP 1 Score: 151.8 bits (382), Expect = 1.1e-33
Identity = 84/188 (44.68%), Postives = 114/188 (60.64%), Query Frame = 1 

Query: 1    LVQNKQPIAYYSHTLVVRDRAKPVYERELMAVVMAVQRWRPYLLGRKFLVKTDQRSLKFL 60
            L+QN++PIAYYS  L  R + K VYERELMA+V A+Q+WR YLLGRKFLV+TDQ+SLKFL
Sbjct: 1026 LIQNQRPIAYYSQALSERQQLKSVYERELMAIVFAIQKWRHYLLGRKFLVRTDQKSLKFL 1085

Query: 61   LEQRL-----------------------GLENKAADALARMPPTVHFNQLTAPNIIDVLL 120
            LEQR                        GLENKA DAL+R         L+ P  I +  
Sbjct: 1086 LEQRKINVEYQKWLTKLLGFDFDIQYKPGLENKAEDALSRRGVATELMALSVPTAIQLQD 1145

Query: 121  IKEEVNNDEKLQKIKEELEGKRGDQNSNFSVKRSMLMYKDRMVISKTSKLIPMILHTYHD 166
            I++E++ D  LQK+KEE+   +GD +  + V +  L+ + ++V+ K S LI +I+   HD
Sbjct: 1146 IEKELSLDPTLQKLKEEIVANKGD-HKEYEVVQGRLLRRGKLVLPKESPLIGIIMKELHD 1205

[Close]
BLAST of Cucsa.334590 vs. NCBI nr
Match: gi|729344250|ref|XP_010541181.1| (PREDICTED: uncharacterized protein LOC104814705 [Tarenaya hassleriana])

HSP 1 Score: 151.0 bits (380), Expect = 1.9e-33
Identity = 89/201 (44.28%), Postives = 120/201 (59.70%), Query Frame = 1 

Query: 1    LVQNKQPIAYYSHTLVVRDRAKPVYERELMAVVMAVQRWRPYLLGRKFLVKTDQRSLKFL 60
            L+Q  +PIA++S  L  R+R KPVYERELMAVV+++QRWR YLLGR FLV TDQ++LKFL
Sbjct: 1160 LMQKHRPIAFFSQALSERERLKPVYERELMAVVLSIQRWRHYLLGRSFLVCTDQKALKFL 1219

Query: 61   LEQ-----------------------RLGLENKAADALARMP------PTVHFNQLTAPN 120
            LEQ                       R G+ENKAAD L+RMP      PT     +T P 
Sbjct: 1220 LEQREVSMEYQRWLTKLLGYDFQIVYRPGVENKAADGLSRMPHNTILEPTCMGLAITIPR 1279

Query: 121  IIDVLLIKEEVNNDEKLQKIKEELEGKRGDQN-SNFSVKRSMLMYKDRMVISKTSKLIPM 172
             I ++ +++E+  D  L++I  +L  K G+     + + + ML YK+R+V+SK S  IP 
Sbjct: 1280 NIQLVEVEKEIGEDSDLKEIVSKL--KEGETKVGKYHLLQGMLRYKNRLVVSKHSSFIPT 1339

[Close]
BLAST of Cucsa.334590 vs. NCBI nr
Match: gi|729344250|ref|XP_010541181.1| (PREDICTED: uncharacterized protein LOC104814705 [Tarenaya hassleriana])

HSP 1 Score: 101.3 bits (251), Expect = 1.8e-18
Identity = 55/102 (53.92%), Postives = 67/102 (65.69%), Query Frame = 1 

Query: 1   LVQNKQPIAYYSHTLVVRDRAKPVYERELMAVVMAVQRWRPYLLGRKFLVKTDQRSLKFL 60
           L+Q  +PIA++S  L  R+R KPVYERELMAVV+++QRWR YLLGR FLV TDQ++LKFL
Sbjct: 288 LMQKHRPIAFFSQALSERERLKPVYERELMAVVLSIQRWRHYLLGRSFLVCTDQKALKFL 347

Query: 61  LEQ-----------------------RLGLENKAADALARMP 80
           LEQ                       R G+ENKAAD L+RMP
Sbjct: 348 LEQREVSMEYQRWLTKLLGYDFQIVYRPGVENKAADGLSRMP 389


HSP 2 Score: 149.8 bits (377), Expect = 4.3e-33
Identity = 88/201 (43.78%), Postives = 121/201 (60.20%), Query Frame = 1 

Query: 1    LVQNKQPIAYYSHTLVVRDRAKPVYERELMAVVMAVQRWRPYLLGRKFLVKTDQRSLKFL 60
            L+Q  +PIA++S  L  R+R KPVYERELM VV+++QRWR YLLGR FLV TDQ++LKFL
Sbjct: 949  LMQKHRPIAFFSQALSERERLKPVYERELMTVVLSIQRWRHYLLGRSFLVCTDQKALKFL 1008

Query: 61   LEQ-----------------------RLGLENKAADALARMP------PTVHFNQLTAPN 120
            LEQ                       R G+ENKAAD L+RMP      PT     +T P 
Sbjct: 1009 LEQREVSMEYQRWLTKLLGYDFQIVYRPGMENKAADGLSRMPHNAILEPTCMGLAITIPR 1068

Query: 121  IIDVLLIKEEVNNDEKLQKIKEELEGKRGDQN-SNFSVKRSMLMYKDRMVISKTSKLIPM 172
             I ++ I++E+  D+ L++I ++L  K G+     + + + ML YK+R+V+S+ S  IP 
Sbjct: 1069 NIQLVEIEKEIRQDKDLKEITDKL--KDGETKVGKYHLLQGMLRYKNRLVVSRHSSFIPT 1128

[Close]
BLAST of Cucsa.334590 vs. NCBI nr
Match: gi|674251029|gb|KFK43794.1| (hypothetical protein AALP_AA1G173500 [Arabis alpina])

HSP 1 Score: 149.1 bits (375), Expect = 7.3e-33
Identity = 83/188 (44.15%), Postives = 111/188 (59.04%), Query Frame = 1 

Query: 1   LVQNKQPIAYYSHTLVVRDRAKPVYERELMAVVMAVQRWRPYLLGRKFLVKTDQRSLKFL 60
           L+Q +QPIAY+S  L  R R K VYERELMA+V A+Q+W+ YLLGRKF+VKTDQ+SLKFL
Sbjct: 31  LMQQQQPIAYFSQALTERQRLKSVYERELMAIVFAIQKWKHYLLGRKFIVKTDQKSLKFL 90

Query: 61  LEQR-----------------------LGLENKAADALARMPPTVHFNQLTAPNIIDVLL 120
           LEQR                        GLENKAADAL+R+        L+ P  I +  
Sbjct: 91  LEQREINLEYQRWLTKILGFDFEIQYKPGLENKAADALSRIDAVPQLCALSMPVAIQLAE 150

Query: 121 IKEEVNNDEKLQKIKEELEGKRGDQNSNFSVKRSMLMYKDRMVISKTSKLIPMILHTYHD 166
           + E V  D +L K+K+E+  K    + +FSV +  L+ K R+V+   S L+ ++L  +HD
Sbjct: 151 VDEAVEKDAELSKLKQEVM-KDATSHPDFSVVQGRLLRKGRLVLPAASPLVKLVLQEFHD 210

The following BLAST results are available for this feature:
BLAST of Cucsa.334590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POL2_DROME7.6e-0632.67Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
BLAST of Cucsa.334590 vs. TrEMBL
Match NameE-valueIdentityDescription
A5B2I6_VITVI4.9e-3645.36Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1[more]
A0A087HNU2_ARAAL5.1e-3344.15Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G173500 PE=4 SV=1[more]
A0A087G0A8_ARAAL6.7e-3345.70Uncharacterized protein OS=Arabis alpina GN=AALP_AAs43195U000200 PE=4 SV=1[more]
A0A087G3S6_ARAAL1.1e-3244.15Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AAs46225U000100 PE=4... [more]
A0A087H2T8_ARAAL1.1e-3245.21Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G124900 PE=4 SV=1[more]
BLAST of Cucsa.334590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147854459|emb|CAN78588.1|7.1e-3645.36hypothetical protein VITISV_043911 [Vitis vinifera][more]
gi|922559973|ref|XP_013608212.1|1.1e-3344.68PREDICTED: uncharacterized protein LOC106314967 [Brassica oleracea var. oleracea... [more]
gi|729344250|ref|XP_010541181.1|1.9e-3344.28PREDICTED: uncharacterized protein LOC104814705 [Tarenaya hassleriana][more]
gi|729344250|ref|XP_010541181.1|1.8e-1853.92PREDICTED: uncharacterized protein LOC104814705 [Tarenaya hassleriana][more]
gi|674251029|gb|KFK43794.1|7.3e-3344.15hypothetical protein AALP_AA1G173500 [Arabis alpina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.334590.1Cucsa.334590.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 57..77
score: -coord: 98..118
scor
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 1..168
score: 8.1
NoneNo IPR availablePANTHERPTHR24559:SF186SUBFAMILY NOT NAMEDcoord: 1..168
score: 8.1
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 1..65
score: 2.08

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.334590Wax gourdcgywgoB671
Cucsa.334590Cucurbita maxima (Rimu)cgycmaB0918
Cucsa.334590Cucurbita maxima (Rimu)cgycmaB0919
Cucsa.334590Cucurbita moschata (Rifu)cgycmoB0917
Cucsa.334590Cucurbita moschata (Rifu)cgycmoB0918
Cucsa.334590Wild cucumber (PI 183967)cgycpiB499
Cucsa.334590Cucumber (Chinese Long) v2cgycuB473
Cucsa.334590Melon (DHL92) v3.5.1cgymeB547
Cucsa.334590Watermelon (97103) v1cgywmB605
Cucsa.334590Cucurbita pepo (Zucchini)cgycpeB0874
Cucsa.334590Cucurbita pepo (Zucchini)cgycpeB0875
Cucsa.334590Bottle gourd (USVL1VR-Ls)cgylsiB544
Cucsa.334590Melon (DHL92) v3.6.1cgymedB548
Cucsa.334590Silver-seed gourdcarcgyB0658
Cucsa.334590Silver-seed gourdcarcgyB1149
Cucsa.334590Cucumber (Chinese Long) v3cgycucB516