Cucsa.334330 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.334330
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	GPI-anchored protein LORELEI
Location	scaffold03306 : 369788 .. 372324 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACAACCAACctaCCTCCcTCCTCTCTCTCTCTCTCTCGCCGGAATTAtGCTCTCCCACCGTTCCTTCTTCAACTTAACAATGCTTCTTCTCTTCTTCCTCTCACTGCTTTTCACTTTTTCTTCCTCTGCTTTCATTTCAGGTAACTTCACCAGATTCAAAATCACCGCCACTTTCTCTATTTTCCCTCTTCTTCTCTATTTCTCTCCTTGACCCTCCTTTTTATGTTTTCCAGGACATGCCTTTGAATCCAACCCTTCAATCGGTCGGAACCTCCTACAGGCTAAAAAAGGTTCCACCCCTTCCTCTCTTTAACATCTTTTTCTCTTTTCTTTTTTCTGACTTCTTTGTCTAGCTTAGTTTAGTTGTACGCATGTTTCAGCTGTTAGGTTTTGAAAGCTCTATTTTATTTATGCTTCTTTTCTTTCTATAAGATCTTCCCGATCTGTGTTTCTTCTCTCTCGTGGTTGTGTGGAATTGGGGGTTACTAGATATCGCTTCTGTTGGTTTCAGTTTGACCATTTGATTCTCTTGTTTTCTCTTCCTGTTCTACTACTCACGACCGTTCTGTAAAAAGGAAATTCACCCGAAATAGTGACTAAATTTTAATTTTCATTATTATCGTATTGGGTTGATCTGTCCGTGATTTACGCTCTGATTCAATAACATTAAAACGGAGGAAAAAAaGTATGTTGCATAAAGTTGCAAAAATTGTGGGTATTAACTGAAGATGAAGATTAGTTGATGTTCATTCTGTTTTAATACTGTTGGATTCTCATCATATGGTAAGCCAGCTGAAGATGAAGATTCTAAATCTGGCGTCTCATTACTTTCTTATGAGAAAACAACTGAATCGTTAGTTGAATGATCTGGGATTATGGCTTTAACATTTTCGTATCTGGTCAGTTGAGCTAGTTGTATGTTGTAAAAGTTCTATCTATACATTGGATTATAAAGTACAGTTATAACTTATATTATAAGGTAATGTAAGTCCAATATAGTAATTTTGTTACATTCATTTGGTTAACTAAATTGATTAAGAAATTAATATTCTTTGTTTTTTATCACTTAATACGTATGTGAAGATAAAAAAAaGTAGCCTCTTAAAAAGTTATATTCTATGGTCTCTGTTGTCTATACCTCCTGCCGGCCTTGTTTGTTTAGATTTTGGCTTTTAATTTAATTTTGTATTAGTGATGTGTTACATAGCATAGGTTTGTAGAAGAACTATTTTGAGATTTGAATAATTTTTTtCTTTTCTTCCCAGAAATCTTCATATTATGTGCATGTGCATTTAGAAAATGAAATAATTAGTTTATGTGCAGTTTTTATCCAAGTGTATAGATGTTTTTCTCCTGGACACAAATTAAAGAACTAACGATAATTTATTTAGCTTTTGATTAGAGATCTGCCACGTTTCCCTTTATGTTCCATTTCTTTTGTCCATATATTAAGCATATGACAATTGATAATCTTTTAGATGAGTGTATTCAAGAGGAATGAGCAGTTTTTGGTGCATACCTCTGTCTTTCATGGAGGAGAAAAGGATCTCTTGATGTTGTTTTGAAATTGCTAGAATTTGATGACTACATATTTTGTGTGGAAAATCATTAGATTGCTAAATCCCCACTTGTTATTAGTGGTCATAATCATATTAGCTTATTACTCATCACGCTTAACCTTTCCAGATTTCAAATAGAAGTTTGAAAACTTTGTAGTGGTATTTTTGCTTACATTATCTGTGCCCTACCGGTGATTTCTACTTTCTGAAGCTACTCTAAAACTAACTTGATCTAATCATGTAATGTTGCACAATTTACGCAGCTTGTCCAGTGAACTTTGAATTCTTAAACTACACAATCATCACAAGCAAGTGCAAGGGGCCTCGATACCCTCCCAAGTTCTGTTGTTCAGCTTTGAAAGAaTTTGCTTGCCCTTATGTCGAAGATCTCAATGATTTAACAAATGATTGTGCTTCGACCATGTTCAGTTACATTAACTTGTATGGAAAATACCCTCCTGGTCTCTTCTCTAGCGAGTGCAAGGAGGGGAAGGAAGGTCTAGAGTGCCCTGCACTCCCACCCTCCACTTCAGCTGATCTAAGTTGGGGCTCGAAAACAAGCTTACCATCGTATTCACTGATTCTCTTAACTGGATTCGTACTGCTGGTACGGCTATTATGATAAGGTCCAAATTCCTTCCATTTTTTtCCCTTTCTTATTTGTTACTGTACGTTAAACATACTTGAAAAATTGCAATTCTTTATTACCATGTATTTATTATAATAGTTTCATAGGCTAAACTTGTTTTATCTGTCTACCACTTTGATAGCTGTGGAAAGCGAGTTCTTATTCATGAGATTGAACTGCAAAAGTTCTTATTTGAGGTCCTTTCTATGTTTTTATTTGGTCAAGGTGACCAGGTGTATCGTCATCATCATATATAGAGTTGTTTGCGACATGTTTCATTTTATCATGTGATGTAATATAGAACCATTACTAAACTTTCATTTATGGTTGATTTGAAATTTTAGTTTT

mRNA sequence

CAACAACCAACCTACCTCCCTCCTCTCTCTCTCTCTCTCGCCGGAATTATGCTCTCCCACCGTTCCTTCTTCAACTTAACAATGCTTCTTCTCTTCTTCCTCTCACTGCTTTTCACTTTTTCTTCCTCTGCTTTCATTTCAGGACATGCCTTTGAATCCAACCCTTCAATCGGTCGGAACCTCCTACAGGCTAAAAAAGCTTGTCCAGTGAACTTTGAATTCTTAAACTACACAATCATCACAAGCAAGTGCAAGGGGCCTCGATACCCTCCCAAGTTCTGTTGTTCAGCTTTGAAAGAATTTGCTTGCCCTTATGTCGAAGATCTCAATGATTTAACAAATGATTGTGCTTCGACCATGTTCAGTTACATTAACTTGTATGGAAAATACCCTCCTGGTCTCTTCTCTAGCGAGTGCAAGGAGGGGAAGGAAGGTCTAGAGTGCCCTGCACTCCCACCCTCCACTTCAGCTGATCTAAGTTGGGGCTCGAAAACAAGCTTACCATCGTATTCACTGATTCTCTTAACTGGATTCGTACTGCTGGTACGGCTATTATGATAAGGTCCAAATTCCTTCCATTTTTTTCCCTTTCTTATTTGTTACTGTACGTTAAACATACTTGAAAAATTGCAATTCTTTATTACCATGTATTTATTATAATAGTTTCATAGGCTAAACTTGTTTTATCTGTCTACCACTTTGATAGCTGTGGAAAGCGAGTTCTTATTCATGAGATTGAACTGCAAAAGTTCTTATTTGAGGTCCTTTCTATGTTTTTATTTGGTCAAGGTGACCAGGTGTATCGTCATCATCATATATAGAGTTGTTTGCGACATGTTTCATTTTATCATGTGATGTAATATAGAACCATTACTAAACTTTCATTTATGGTTGATTTGAAATTTTAGTTTT

Coding sequence (CDS)

AtGCTCTCCCACCGTTCCTTCTTCAACTTAACAATGCTTCTTCTCTTCTTCCTCTCACTGCTTTTCACTTTTTCTTCCTCTGCTTTCATTTCAGGACATGCCTTTGAATCCAACCCTTCAATCGGTCGGAACCTCCTACAGGCTAAAAAAGCTTGTCCAGTGAACTTTGAATTCTTAAACTACACAATCATCACAAGCAAGTGCAAGGGGCCTCGATACCCTCCCAAGTTCTGTTGTTCAGCTTTGAAAGAaTTTGCTTGCCCTTATGTCGAAGATCTCAATGATTTAACAAATGATTGTGCTTCGACCATGTTCAGTTACATTAACTTGTATGGAAAATACCCTCCTGGTCTCTTCTCTAGCGAGTGCAAGGAGGGGAAGGAAGGTCTAGAGTGCCCTGCACTCCCACCCTCCACTTCAGCTGATCTAAGTTGGGGCTCGAAAACAAGCTTACCATCGTATTCACTGATTCTCTTAACTGGATTCGTACTGCTGGTACGGCTATTATGA

Protein sequence

MLSHRSFFNLTMLLLFFLSLLFTFSSSAFISGHAFESNPSIGRNLLQAKKACPVNFEFLNYTIITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYINLYGKYPPGLFSSECKEGKEGLECPALPPSTSADLSWGSKTSLPSYSLILLTGFVLLVRLL*

Homology

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BLAST of Cucsa.334330 vs. Swiss-Prot
Match: LRE_ARATH (GPI-anchored protein LORELEI OS=Arabidopsis thaliana GN=LRE PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.7e-42
Identity = 82/161 (50.93%), Postives = 112/161 (69.57%), Query Frame = 1


Query: 10  LTMLLLFFLSLLFTFSSSAFISGHAFESNPSI-GRNLLQAKKACPVNFEFLNYTIITSKC 69
           L +L  F ++LL + SSS+ IS   FES  S+ GRNL  AKK C VNFE+++Y ++T +C
Sbjct: 3   LILLFFFLMALLVSLSSSSSISDGVFESQTSVSGRNLRHAKKKCEVNFEYMDYKVLTKRC 62

Query: 70  KGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYINLYGKYPPGLFSSECKEGKE 129
           KGP +P K CCSA KEFACPYV  +ND+ +DCA TMFSY+N+YG YP GLF++EC+E K+
Sbjct: 63  KGPAFPAKECCSAFKEFACPYVSQINDMNSDCAQTMFSYMNIYGNYPTGLFANECRERKD 122

Query: 130 GLECPALPPSTSADLSWGSKTSLPSYSLILLTGFVLLVRLL 170
           GL CP LPP  S +L+  +  S P +  +L++    +  LL
Sbjct: 123 GLVCP-LPPLYSHNLNASTADSTPRFISLLISAATAVFALL 162

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BLAST of Cucsa.334330 vs. TrEMBL
Match: A0A0A0K362_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G186190 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 2.5e-93
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1


Query: 1   MLSHRSFFNLTMLLLFFLSLLFTFSSSAFISGHAFESNPSIGRNLLQAKKACPVNFEFLN 60
           MLSHRSFFNLTMLLLFFLSLLFTFSSSAFISGHAFESNPSIGRNLLQAKKACPVNFEFLN
Sbjct: 1   MLSHRSFFNLTMLLLFFLSLLFTFSSSAFISGHAFESNPSIGRNLLQAKKACPVNFEFLN 60

Query: 61  YTIITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYINLYGKYPPGLFS 120
           YTIITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYINLYGKYPPGLFS
Sbjct: 61  YTIITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYINLYGKYPPGLFS 120

Query: 121 SECKEGKEGLECPALPPSTSADLSWGSKTSLPSYSLILLTGFVLLVRLL 170
           SECKEGKEGLECPALPPSTSADLSWGSKTSLPSYSLILLTGFVLLVRLL
Sbjct: 121 SECKEGKEGLECPALPPSTSADLSWGSKTSLPSYSLILLTGFVLLVRLL 169

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BLAST of Cucsa.334330 vs. TrEMBL
Match: V4NAG5_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014845mg PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.1e-53
Identity = 101/162 (62.35%), Postives = 127/162 (78.40%), Query Frame = 1


Query: 6   SFFNLTMLLLFFLSLLFTFSSSAFISGHAFESNP-SIGRNLLQAKKACPVNFEFLNYTII 65
           +F + T+     L++L +FSSS+FIS   FES   +IGRNLLQ KKACPVNFEF+NYTII
Sbjct: 4   NFLSRTLFFFLLLTILSSFSSSSFISDDVFESQTLAIGRNLLQTKKACPVNFEFMNYTII 63

Query: 66  TSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYINLYGKYPPGLFSSECK 125
            ++CKGP++PPK CC+A K+FACPY E+LNDL+NDCA+TMFSYINLYGKYPPGLF+++CK
Sbjct: 64  KNQCKGPKFPPKECCAAFKDFACPYTEELNDLSNDCATTMFSYINLYGKYPPGLFANQCK 123

Query: 126 EGKEGLECPALPPSTSADLSWGSKTSLPSYSLILLTGFVLLV 167
           EGKEGLECPA PP ++AD +  + T+  S  L L     LLV
Sbjct: 124 EGKEGLECPATPPESAADANANAATTASSSRLWLTVSAALLV 165

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BLAST of Cucsa.334330 vs. TrEMBL
Match: Q9ZWN0_VIGRA (GPI-anchored protein OS=Vigna radiata GN=ARG8 PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.3e-53
Identity = 103/163 (63.19%), Postives = 121/163 (74.23%), Query Frame = 1


Query: 4   HRSFFNLTMLLLFFLSLLFTFSSSAFISGHAFESNPSIGRNLLQAKKACPVNFEFLNYTI 63
           H+ F+  +  LL F +L  +  +  F+S H F+S    GRNLLQAKK C VNFEFLNYTI
Sbjct: 6   HKRFWVSSSFLLLFWALSVSSLTPTFLSDHVFDSQAHAGRNLLQAKKGCSVNFEFLNYTI 65

Query: 64  ITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYINLYGKYPPGLFSSEC 123
           ITSKCKGP+YPPK CC A KEFACPY + LNDLTN+CASTMFSYINLYGKYPPGLF+SEC
Sbjct: 66  ITSKCKGPQYPPKECCGAFKEFACPYADVLNDLTNECASTMFSYINLYGKYPPGLFASEC 125

Query: 124 KEGKEGLECPALPPSTSADLSWGSKTSLPSYSLILLTGFVLLV 167
            + K GLECPALPPS SAD +       PS  L+L T F++L+
Sbjct: 126 HDTKRGLECPALPPSVSADDTSNQFLHCPSLLLLLTTCFLILL 168

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BLAST of Cucsa.334330 vs. TrEMBL
Match: E0CTD1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g03800 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 5.7e-53
Identity = 107/162 (66.05%), Postives = 128/162 (79.01%), Query Frame = 1


Query: 11  TMLLLFFLSLLFTFSSSAFISGHAFESNPSIGRNLLQAKKACPVNFEFLNYTIITSKCKG 70
           ++LLLF L+ L T +SS+FIS    +S+ S GR LLQ KK+CPVNFEFLNYTIITS+CKG
Sbjct: 8   SLLLLFLLTCLVTSASSSFISHDVLQSHESTGRTLLQTKKSCPVNFEFLNYTIITSQCKG 67

Query: 71  PRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYINLYGKYPPGLFSSECKEGKEGL 130
           P+Y PK CC A K+FACPY ++LNDLTNDCASTMFSYINLYGKYPPGLF+SEC+EGKEGL
Sbjct: 68  PQYSPKLCCGAFKDFACPYADELNDLTNDCASTMFSYINLYGKYPPGLFASECQEGKEGL 127

Query: 131 ECPALPPST-----SADLSWGSKTSLPSYSLI-LLTGFVLLV 167
           ECPA  PST     S + S G   S  SYS++ LL GF++L+
Sbjct: 128 ECPAQAPSTESAKDSVNASRGQIVS--SYSMLTLLAGFLVLL 167

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BLAST of Cucsa.334330 vs. TrEMBL
Match: I3SAU8_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 7.5e-53
Identity = 104/155 (67.10%), Postives = 117/155 (75.48%), Query Frame = 1


Query: 12  MLLLFFLSLLFTFSSSAFISGHAFESNPSIGRNLLQAKKACPVNFEFLNYTIITSKCKGP 71
           +LL+  LS+  + SSS F+S   F S    GRNLLQAKK C VNFEFLNYTIITSKCKGP
Sbjct: 16  LLLILALSVSSSSSSSTFLSDAVFGSQAHTGRNLLQAKKGCSVNFEFLNYTIITSKCKGP 75

Query: 72  RYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYINLYGKYPPGLFSSECKEGKEGLE 131
            YPPK CC A KEFACPYV+ LNDLTNDCASTMFSYINLYGKYPPGLF+ EC+EGKEGL 
Sbjct: 76  SYPPKDCCGAFKEFACPYVDVLNDLTNDCASTMFSYINLYGKYPPGLFAHECREGKEGLA 135

Query: 132 CPALPPSTSADLSWGSKTSLPSYSLILLTGFVLLV 167
           CPALPPS  AD +       PS  L+L   F++L+
Sbjct: 136 CPALPPSALADDTSSQVVHFPSLVLVLTACFLILL 170

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BLAST of Cucsa.334330 vs. TAIR10
Match: AT5G56170.1 (AT5G56170.1 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1)

HSP 1 Score: 208.0 bits (528), Expect = 4.6e-54
Identity = 104/165 (63.03%), Postives = 127/165 (76.97%), Query Frame = 1


Query: 10  LTMLLLFF--LSLLFTFSSSAFISGHAFESNPSI-GRNLLQAKKACPVNFEFLNYTIITS 69
           L+  L FF  LS+L +FSSS+FIS   FES   + GRNLLQ KK CPVNFEF+NYTIITS
Sbjct: 4   LSRALFFFLLLSVLSSFSSSSFISDGVFESQSLVLGRNLLQTKKTCPVNFEFMNYTIITS 63

Query: 70  KCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYINLYGKYPPGLFSSECKEG 129
           KCKGP+YPPK CC A K+FACPY + LNDL++DCA+TMFSYINLYGKYPPGLF+++CKEG
Sbjct: 64  KCKGPKYPPKECCGAFKDFACPYTDQLNDLSSDCATTMFSYINLYGKYPPGLFANQCKEG 123

Query: 130 KEGLECPA---LPPSTSADLSWGSKTSLPSYSLILLTGFVLLVRL 169
           KEGLECPA   LPP TSA+++  + TS     L +    ++ V+L
Sbjct: 124 KEGLECPAGSQLPPETSAEVN-AATTSSSRLWLTVSAALLVFVKL 167

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BLAST of Cucsa.334330 vs. TAIR10
Match: AT4G26466.1 (AT4G26466.1 lorelei)

HSP 1 Score: 173.7 bits (439), Expect = 9.6e-44
Identity = 82/161 (50.93%), Postives = 112/161 (69.57%), Query Frame = 1


Query: 10  LTMLLLFFLSLLFTFSSSAFISGHAFESNPSI-GRNLLQAKKACPVNFEFLNYTIITSKC 69
           L +L  F ++LL + SSS+ IS   FES  S+ GRNL  AKK C VNFE+++Y ++T +C
Sbjct: 3   LILLFFFLMALLVSLSSSSSISDGVFESQTSVSGRNLRHAKKKCEVNFEYMDYKVLTKRC 62

Query: 70  KGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYINLYGKYPPGLFSSECKEGKE 129
           KGP +P K CCSA KEFACPYV  +ND+ +DCA TMFSY+N+YG YP GLF++EC+E K+
Sbjct: 63  KGPAFPAKECCSAFKEFACPYVSQINDMNSDCAQTMFSYMNIYGNYPTGLFANECRERKD 122

Query: 130 GLECPALPPSTSADLSWGSKTSLPSYSLILLTGFVLLVRLL 170
           GL CP LPP  S +L+  +  S P +  +L++    +  LL
Sbjct: 123 GLVCP-LPPLYSHNLNASTADSTPRFISLLISAATAVFALL 162

[Close]

BLAST of Cucsa.334330 vs. TAIR10
Match: AT4G28280.2 (AT4G28280.2 LORELEI-LIKE-GPI ANCHORED PROTEIN 3)

HSP 1 Score: 165.6 bits (418), Expect = 2.6e-41
Identity = 84/153 (54.90%), Postives = 105/153 (68.63%), Query Frame = 1


Query: 12  MLLLFFLSLLFTFSSSAFISGHAFESNPSIGRNLLQAKKACPVNFEFLNYTIITSKCKGP 71
           ++ L  + LL  F+ S  IS   FES+PS  R LLQAK  C  +F   NYTIITSKCKGP
Sbjct: 8   LVSLLSILLLSGFAFSHHISLDEFESHPSTSRALLQAKATCKEDFAAKNYTIITSKCKGP 67

Query: 72  RYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYINLYGKYPPGLFSSECKEGKEGLE 131
            YP K CCSA K+FACP+ E LND   DCASTMFSYINLYG+YPPG+F++ CKEGKEGL+
Sbjct: 68  NYPAKVCCSAFKDFACPFAEVLNDEKTDCASTMFSYINLYGRYPPGIFANMCKEGKEGLD 127

Query: 132 CPALPPSTSADLSWGSKTSLPSYSLILLTGFVL 165
           C  + P++S+  S      L S  ++L+T  +L
Sbjct: 128 CTDVTPTSSSHAS----IPLVSTHVLLITVSIL 156

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BLAST of Cucsa.334330 vs. TAIR10
Match: AT2G20700.1 (AT2G20700.1 LORELEI-LIKE-GPI ANCHORED PROTEIN 2)

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-37
Identity = 80/152 (52.63%), Postives = 101/152 (66.45%), Query Frame = 1


Query: 18  LSLLFTFSSSAF-ISGHAFESNPSIGRNLLQAKKACPVNFEFLNYTIITSKCKGPRYPPK 77
           LSLL  F  S F +S   F+ + +  R LLQ +  C  +F   NYTIITS+CKGP YP  
Sbjct: 9   LSLLPIFLLSGFSLSYDEFDGHAATSRALLQTRTTCKEDFANKNYTIITSRCKGPNYPAN 68

Query: 78  FCCSALKEFACPYVEDLNDLTNDCASTMFSYINLYGKYPPGLFSSECKEGKEGLECPALP 137
            CCSA K+FACP+ E LND  NDCASTMFSYINLYG+YPPG+F++ CKEGKEGL+C  + 
Sbjct: 69  VCCSAFKDFACPFAEVLNDEKNDCASTMFSYINLYGRYPPGIFANMCKEGKEGLDCTDVT 128

Query: 138 PSTSADLSWGSKTSLPSYSLILLTGFVLLVRL 169
            S SA      + S  + SL +L+ F++L  L
Sbjct: 129 QSASATSDSIPRASTTA-SLAVLSTFLVLCLL 159

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BLAST of Cucsa.334330 vs. NCBI nr
Match: gi|449443998|ref|XP_004139762.1| (PREDICTED: GPI-anchored protein LORELEI [Cucumis sativus])

HSP 1 Score: 349.4 bits (895), Expect = 3.6e-93
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1


Query: 1   MLSHRSFFNLTMLLLFFLSLLFTFSSSAFISGHAFESNPSIGRNLLQAKKACPVNFEFLN 60
           MLSHRSFFNLTMLLLFFLSLLFTFSSSAFISGHAFESNPSIGRNLLQAKKACPVNFEFLN
Sbjct: 1   MLSHRSFFNLTMLLLFFLSLLFTFSSSAFISGHAFESNPSIGRNLLQAKKACPVNFEFLN 60

Query: 61  YTIITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYINLYGKYPPGLFS 120
           YTIITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYINLYGKYPPGLFS
Sbjct: 61  YTIITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYINLYGKYPPGLFS 120

Query: 121 SECKEGKEGLECPALPPSTSADLSWGSKTSLPSYSLILLTGFVLLVRLL 170
           SECKEGKEGLECPALPPSTSADLSWGSKTSLPSYSLILLTGFVLLVRLL
Sbjct: 121 SECKEGKEGLECPALPPSTSADLSWGSKTSLPSYSLILLTGFVLLVRLL 169

[Close]

BLAST of Cucsa.334330 vs. NCBI nr
Match: gi|659093945|ref|XP_008447799.1| (PREDICTED: GPI-anchored protein LORELEI-like [Cucumis melo])

HSP 1 Score: 327.0 bits (837), Expect = 1.9e-86
Identity = 159/169 (94.08%), Postives = 162/169 (95.86%), Query Frame = 1


Query: 1   MLSHRSFFNLTMLLLFFLSLLFTFSSSAFISGHAFESNPSIGRNLLQAKKACPVNFEFLN 60
           MLSHRSFFNL MLLLFFLSLLFTFSSS  ISG+ FESNPSIGRNLLQAKKACPVNFEFLN
Sbjct: 1   MLSHRSFFNLPMLLLFFLSLLFTFSSSTSISGNLFESNPSIGRNLLQAKKACPVNFEFLN 60

Query: 61  YTIITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYINLYGKYPPGLFS 120
           YTIITSKCKGPRYPPK CCSALKEFACPYVED+NDLTNDCASTMFSYINLYGKYPPGLFS
Sbjct: 61  YTIITSKCKGPRYPPKLCCSALKEFACPYVEDINDLTNDCASTMFSYINLYGKYPPGLFS 120

Query: 121 SECKEGKEGLECPALPPSTSADLSWGSKTSLPSYSLILLTGFVLLVRLL 170
           SECKEGKEGLECPALPPSTSADLSW SKTSLPSYSLILLTGFVLL+ LL
Sbjct: 121 SECKEGKEGLECPALPPSTSADLSWCSKTSLPSYSLILLTGFVLLLWLL 169

[Close]

BLAST of Cucsa.334330 vs. NCBI nr
Match: gi|950969491|ref|XP_014499837.1| (PREDICTED: GPI-anchored protein LORELEI-like [Vigna radiata var. radiata])

HSP 1 Score: 218.4 bits (555), Expect = 9.7e-54
Identity = 104/163 (63.80%), Postives = 122/163 (74.85%), Query Frame = 1


Query: 4   HRSFFNLTMLLLFFLSLLFTFSSSAFISGHAFESNPSIGRNLLQAKKACPVNFEFLNYTI 63
           H+SF+  +  LL F +L  +  +  F+S H F+S    GRNLLQAKK C VNFEFLNYTI
Sbjct: 6   HKSFWVSSSFLLLFCALSVSSLTPTFLSDHVFDSQAHAGRNLLQAKKGCSVNFEFLNYTI 65

Query: 64  ITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYINLYGKYPPGLFSSEC 123
           ITSKCKGP+YPPK CC A KEFACPY + LNDLTN+CASTMFSYINLYGKYPPGLF+SEC
Sbjct: 66  ITSKCKGPQYPPKECCGAFKEFACPYADVLNDLTNECASTMFSYINLYGKYPPGLFASEC 125

Query: 124 KEGKEGLECPALPPSTSADLSWGSKTSLPSYSLILLTGFVLLV 167
            + K GLECPALPPS SAD +       PS  L+L T F++L+
Sbjct: 126 HDTKRGLECPALPPSVSADDTSNQFLHCPSLLLLLTTCFLILL 168

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BLAST of Cucsa.334330 vs. NCBI nr
Match: gi|567178657|ref|XP_006401368.1| (hypothetical protein EUTSA_v10014845mg [Eutrema salsugineum])

HSP 1 Score: 217.6 bits (553), Expect = 1.6e-53
Identity = 101/162 (62.35%), Postives = 127/162 (78.40%), Query Frame = 1


Query: 6   SFFNLTMLLLFFLSLLFTFSSSAFISGHAFESNP-SIGRNLLQAKKACPVNFEFLNYTII 65
           +F + T+     L++L +FSSS+FIS   FES   +IGRNLLQ KKACPVNFEF+NYTII
Sbjct: 4   NFLSRTLFFFLLLTILSSFSSSSFISDDVFESQTLAIGRNLLQTKKACPVNFEFMNYTII 63

Query: 66  TSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYINLYGKYPPGLFSSECK 125
            ++CKGP++PPK CC+A K+FACPY E+LNDL+NDCA+TMFSYINLYGKYPPGLF+++CK
Sbjct: 64  KNQCKGPKFPPKECCAAFKDFACPYTEELNDLSNDCATTMFSYINLYGKYPPGLFANQCK 123

Query: 126 EGKEGLECPALPPSTSADLSWGSKTSLPSYSLILLTGFVLLV 167
           EGKEGLECPA PP ++AD +  + T+  S  L L     LLV
Sbjct: 124 EGKEGLECPATPPESAADANANAATTASSSRLWLTVSAALLV 165

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BLAST of Cucsa.334330 vs. NCBI nr
Match: gi|3868853|dbj|BAA34247.1| (GPI-anchored protein [Vigna radiata])

HSP 1 Score: 216.1 bits (549), Expect = 4.8e-53
Identity = 103/163 (63.19%), Postives = 121/163 (74.23%), Query Frame = 1


Query: 4   HRSFFNLTMLLLFFLSLLFTFSSSAFISGHAFESNPSIGRNLLQAKKACPVNFEFLNYTI 63
           H+ F+  +  LL F +L  +  +  F+S H F+S    GRNLLQAKK C VNFEFLNYTI
Sbjct: 6   HKRFWVSSSFLLLFWALSVSSLTPTFLSDHVFDSQAHAGRNLLQAKKGCSVNFEFLNYTI 65

Query: 64  ITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYINLYGKYPPGLFSSEC 123
           ITSKCKGP+YPPK CC A KEFACPY + LNDLTN+CASTMFSYINLYGKYPPGLF+SEC
Sbjct: 66  ITSKCKGPQYPPKECCGAFKEFACPYADVLNDLTNECASTMFSYINLYGKYPPGLFASEC 125

Query: 124 KEGKEGLECPALPPSTSADLSWGSKTSLPSYSLILLTGFVLLV 167
            + K GLECPALPPS SAD +       PS  L+L T F++L+
Sbjct: 126 HDTKRGLECPALPPSVSADDTSNQFLHCPSLLLLLTTCFLILL 168

The following BLAST results are available for this feature:

BLAST of Cucsa.334330 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LRE_ARATH	1.7e-42	50.93	GPI-anchored protein LORELEI OS=Arabidopsis thaliana GN=LRE PE=2 SV=1	[more]

BLAST of Cucsa.334330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K362_CUCSA	2.5e-93	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G186190 PE=4 SV=1	[more]
V4NAG5_EUTSA	1.1e-53	62.35	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014845mg PE=4 SV=1	[more]
Q9ZWN0_VIGRA	3.3e-53	63.19	GPI-anchored protein OS=Vigna radiata GN=ARG8 PE=2 SV=1	[more]
E0CTD1_VITVI	5.7e-53	66.05	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g03800 PE=4 SV=...	[more]
I3SAU8_LOTJA	7.5e-53	67.10	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]

BLAST of Cucsa.334330 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G56170.1	4.6e-54	63.03	LORELEI-LIKE-GPI-ANCHORED PROTEIN 1	[more]
AT4G26466.1	9.6e-44	50.93	lorelei	[more]
AT4G28280.2	2.6e-41	54.90	LORELEI-LIKE-GPI ANCHORED PROTEIN 3	[more]
AT2G20700.1	1.3e-37	52.63	LORELEI-LIKE-GPI ANCHORED PROTEIN 2	[more]

BLAST of Cucsa.334330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443998\|ref\|XP_004139762.1\|	3.6e-93	100.00	PREDICTED: GPI-anchored protein LORELEI [Cucumis sativus]	[more]
gi\|659093945\|ref\|XP_008447799.1\|	1.9e-86	94.08	PREDICTED: GPI-anchored protein LORELEI-like [Cucumis melo]	[more]
gi\|950969491\|ref\|XP_014499837.1\|	9.7e-54	63.80	PREDICTED: GPI-anchored protein LORELEI-like [Vigna radiata var. radiata]	[more]
gi\|567178657\|ref\|XP_006401368.1\|	1.6e-53	62.35	hypothetical protein EUTSA_v10014845mg [Eutrema salsugineum]	[more]
gi\|3868853\|dbj\|BAA34247.1\|	4.8e-53	63.19	GPI-anchored protein [Vigna radiata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0090406	pollen tube
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.334330.1	Cucsa.334330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31533	FAMILY NOT NAMED	coord: 5..169 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.334330	Cla005587	Watermelon (97103) v1	cgywmB603
Cucsa.334330	Csa7G186180	Cucumber (Chinese Long) v2	cgycuB472
Cucsa.334330	MELO3C013226	Melon (DHL92) v3.5.1	cgymeB546
Cucsa.334330	ClCG09G021730	Watermelon (Charleston Gray)	cgywcgB574
Cucsa.334330	CSPI07G09170	Wild cucumber (PI 183967)	cgycpiB498
Cucsa.334330	CmaCh09G010450	Cucurbita maxima (Rimu)	cgycmaB0916
Cucsa.334330	CmaCh01G010420	Cucurbita maxima (Rimu)	cgycmaB0917
Cucsa.334330	CmoCh01G010820	Cucurbita moschata (Rifu)	cgycmoB0916
Cucsa.334330	CmoCh09G010500	Cucurbita moschata (Rifu)	cgycmoB0915
Cucsa.334330	Lsi02G017850	Bottle gourd (USVL1VR-Ls)	cgylsiB543
Cucsa.334330	Cp4.1LG02g00250	Cucurbita pepo (Zucchini)	cgycpeB0872
Cucsa.334330	Cp4.1LG06g08050	Cucurbita pepo (Zucchini)	cgycpeB0873
Cucsa.334330	MELO3C013226.2	Melon (DHL92) v3.6.1	cgymedB547
Cucsa.334330	CsaV3_7G021300	Cucumber (Chinese Long) v3	cgycucB515
Cucsa.334330	Cla97C09G183170	Watermelon (97103) v2	cgywmbB578
Cucsa.334330	Bhi09G001542	Wax gourd	cgywgoB670
Cucsa.334330	Carg23365	Silver-seed gourd	carcgyB0088

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None