Cucsa.332310 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.332310
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Plant/F20D21-34 protein
Location	scaffold03264 : 53859 .. 55430 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAAAGTGGGAAAAAATAAAGGTTATGAAGTTTATTTTCGTGATTGGTGAAACAAACGTAATTAAGCATTGGCACATGGAATGATGGGCGGTAGAAAATTTAGTTTTGGTAGCCATGAAGAATTGATTTTTGTGTTGGATAAATAAATGGAGATAATTTACTTTGTAGAACATTTTTTGCGCATGATGTAACTCTCTCTCTGCCCCCCAGGTTGGGCTGTTGGGCATGGGTCGAGGACTCCAAAGAGATCTAAATAGAATTGCTGAAAGTGCTGATACATCAACTCCTGAGGGTTTGTGCTATGTTTTAACTGGTACACAATTGTTTTCTTCTTCCTTTGGGAATTAATTACTTTCTTTCTGTTTCCTTTCGGCTTTCATAAAAAAGCAGTAAACTCCATTGTTAGTCTTTGCACATGAGAAGGTACTTAGAGATATAGAAGTCCCTAATAGCAATGATCCTGTCTTTTGATTTCCGAATTTGTTTCCATCATTTCTTACATAAAAAAAGAAAGAAATAAAAACTTTCCAGCATGTGCTATGGAATGAACGTCTTAAGTTGATATTGTTATTTGTTTCGCAACTGTCTTTAAGACTTTTCCAAAATGGGTTTATGGAGATTTCCGCAAGTAGGAATCACCATTCTTTTTTGTTATATTCTCAATGTGATTTTTGTTTTCACCTTTGGGTTGCAGAAACGATTCTAGCGCTGCTTCGGCATCCTGATTATTGCATTTCAGGCTACTCATCTGTAAGTCCCACTATCTTCTTGGAAATACCTGATCTAGATGCAGACTTCACAAATGCATATTACTGGTTTGTCAAGGGTTGCTGGATACATTGGTGATTGTCCATCAATATCCATGAATAAACCAGGTTGAATAAGGCAGGGGAATGTAAAATGAGATACTGAATAGACTGAATAGACTACAAACACCTTCACTACCAAGAATAGCTAGGCGAGTTGAATCTTTATAGTTACTCTGCACTTTTCCTTATAGCAAGAAGATGTTGACGAATAATTTGCACTCTCCTTCTCTCTCCATCTCTGTCCGTACCAGTGCAGATGCAAGGGTTTTATTTTGGGGCGCACAATGTATTAAGAAACTATAACGATTAATGTAAAAAAGTATTAATGGCTTCAAAAATAACTAATTTAGTACTTATTACAATTGTTCTTTATGTGTTTCCAAATTTAGAAATCAATTCATGATAACTTTATTATCTAACATATGTATGTATGTATGTATGTATGTATCTGTATAATATGCTTATGTGCATGCTAATTGTCAGTTGTCACACCATTCTTTGAATTATTTCGTACAATGATTATTAGCTGTAGTGTAGTTAGCAATGGAAGCTTACAGTTTGTTTTTGAAAAACCTAGATTGATGTGAAACGTAGTATAGAAGAAGGAGAGAAACGTTTCAATAAATTATCAATTGAAGAGCGAGGGAAATTTGATGAGGAAACTCTCGTCAATGTGAATAGCATCAAAAGACAGAGCACAAGCAGCCAGAGGACAAGTGGATTTAGCAATGAGTACATTGTGGTTAGTTTCTCTGTGCTTTGA

mRNA sequence

TCAAAGTGGGAAAAAATAAAGGTTATGAAGTTTATTTTCGTGATTGGTGAAACAAACGTTGGGCTGTTGGGCATGGGTCGAGGACTCCAAAGAGATCTAAATAGAATTGCTGAAAGTGCTGATACATCAACTCCTGAGGGTTTGTGCTATGTTTTAACTGAAACGATTCTAGCGCTGCTTCGGCATCCTGATTATTGCATTTCAGGCTACTCATCTATTGATGTGAAACGTAGTATAGAAGAAGGAGAGAAACGTTTCAATAAATTATCAATTGAAGAGCGAGGGAAATTTGATGAGGAAACTCTCGTCAATGTGAATAGCATCAAAAGACAGAGCACAAGCAGCCAGAGGACAAGTGGATTTAGCAATGAGTACATTGTGGTTAGTTTCTCTGTGCTTTGA

Coding sequence (CDS)

TCAAAGTGGGAAAAAATAAAGGTTATGAAGTTTATTTTCGTGATTGGTGAAACAAACGTTGGGCTGTTGGGCATGGGTCGAGGACTCCAAAGAGATCTAAATAGAATTGCTGAAAGTGCTGATACATCAACTCCTGAGGGTTTGTGCTATGTTTTAACTGAAACGATTCTAGCGCTGCTTCGGCATCCTGATTATTGCATTTCAGGCTACTCATCTATTGATGTGAAACGTAGTATAGAAGAAGGAGAGAAACGTTTCAATAAATTATCAATTGAAGAGCGAGGGAAATTTGATGAGGAAACTCTCGTCAATGTGAATAGCATCAAAAGACAGAGCACAAGCAGCCAGAGGACAAGTGGATTTAGCAATGAGTACATTGTGGTTAGTTTCTCTGTGCTTTGA

Protein sequence

SKWEKIKVMKFIFVIGETNVGLLGMGRGLQRDLNRIAESADTSTPEGLCYVLTETILALLRHPDYCISGYSSIDVKRSIEEGEKRFNKLSIEERGKFDEETLVNVNSIKRQSTSSQRTSGFSNEYIVVSFSVL*

Homology

[Close]

BLAST of Cucsa.332310 vs. TrEMBL
Match: A0A0A0LY57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G695400 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.0e-53
Identity = 109/113 (96.46%), Postives = 111/113 (98.23%), Query Frame = 1


Query: 20  VGLLGMGRGLQRDLNRIAESADTSTPEGLCYVLTETILALLRHPDYCISGYSSIDVKRSI 79
           VGLLGMGRGLQRDLNRIAESADTSTPEGLCYVLTETILALLRHPDYCISGYSSIDVKRSI
Sbjct: 49  VGLLGMGRGLQRDLNRIAESADTSTPEGLCYVLTETILALLRHPDYCISGYSSIDVKRSI 108

Query: 80  EEGEKRFNKLSIEERGKFDEETLVNVNSIKRQSTSSQRTSGFSNEYIVVSFSV 133
           EEGEKRFNKLSIEERGKFDEETLVNVNSIKRQSTSSQRTSGFSNEYIV++  V
Sbjct: 109 EEGEKRFNKLSIEERGKFDEETLVNVNSIKRQSTSSQRTSGFSNEYIVITILV 161

[Close]

BLAST of Cucsa.332310 vs. TrEMBL
Match: W9R6R7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006177 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.5e-48
Identity = 102/129 (79.07%), Postives = 112/129 (86.82%), Query Frame = 1


Query: 4   EKIKVMKFIFVIGETNVGLLGMGRGLQRDLNRIAESADTSTPEGLCYVLTETILALLRHP 63
           EK  V+K         VGLLGMGR LQRDLNRIAE+ADTSTPEGL YVLTET LALLRHP
Sbjct: 220 EKTSVLK-------VQVGLLGMGRALQRDLNRIAETADTSTPEGLSYVLTETTLALLRHP 279

Query: 64  DYCISGYSSIDVKRSIEEGEKRFNKLSIEERGKFDEETLVNVNSIKRQSTSSQRTSGFSN 123
           DYCISGYSS+D+KRS+E+GEKRFN+LSIEERGKFDEETLVNVN+IKRQST+SQR SGFSN
Sbjct: 280 DYCISGYSSVDIKRSMEDGEKRFNQLSIEERGKFDEETLVNVNNIKRQSTTSQRASGFSN 339

Query: 124 EYIVVSFSV 133
           EYIV+S  V
Sbjct: 340 EYIVISILV 341

[Close]

BLAST of Cucsa.332310 vs. TrEMBL
Match: G7L0U7_MEDTR (Plant/F20D21-34 protein OS=Medicago truncatula GN=MTR_7g114660 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.1e-46
Identity = 94/110 (85.45%), Postives = 104/110 (94.55%), Query Frame = 1


Query: 20  VGLLGMGRGLQRDLNRIAESADTSTPEGLCYVLTETILALLRHPDYCISGYSSIDVKRSI 79
           VGLLGMGR LQRDLNRIAE ADTS+PEGL Y+LTET LALLRHPDYCISGYSS+D+KR I
Sbjct: 215 VGLLGMGRSLQRDLNRIAEVADTSSPEGLNYILTETSLALLRHPDYCISGYSSVDIKRGI 274

Query: 80  EEGEKRFNKLSIEERGKFDEETLVNVNSIKRQSTSSQRTSGFSNEYIVVS 130
           EEGEKRFN+LSIEERGKFDEETLVNVN+IKRQST SQR++GFSNEYIV++
Sbjct: 275 EEGEKRFNQLSIEERGKFDEETLVNVNNIKRQSTRSQRSNGFSNEYIVIT 324

[Close]

BLAST of Cucsa.332310 vs. TrEMBL
Match: A0A151TXM9_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_011101 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.1e-46
Identity = 95/110 (86.36%), Postives = 103/110 (93.64%), Query Frame = 1


Query: 20  VGLLGMGRGLQRDLNRIAESADTSTPEGLCYVLTETILALLRHPDYCISGYSSIDVKRSI 79
           VGLLGMGR LQRDLNRIAE ADTSTPEGL YVLTET LALLRHPDYCIS YSS+D+KR I
Sbjct: 114 VGLLGMGRTLQRDLNRIAEVADTSTPEGLNYVLTETTLALLRHPDYCISAYSSVDIKRGI 173

Query: 80  EEGEKRFNKLSIEERGKFDEETLVNVNSIKRQSTSSQRTSGFSNEYIVVS 130
           E+GEKRFN+LSIEERGKFDEETLVNVN+IKRQST SQRT+GFSNEYIV++
Sbjct: 174 EDGEKRFNQLSIEERGKFDEETLVNVNNIKRQSTRSQRTNGFSNEYIVIT 223

[Close]

BLAST of Cucsa.332310 vs. TrEMBL
Match: A0A0J8CIQ2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g082310 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.5e-45
Identity = 98/129 (75.97%), Postives = 108/129 (83.72%), Query Frame = 1


Query: 4   EKIKVMKFIFVIGETNVGLLGMGRGLQRDLNRIAESADTSTPEGLCYVLTETILALLRHP 63
           EK  V+K         VGLLGM R LQ DLNRIAE+ADTSTPEGL YVLTETILALLRHP
Sbjct: 214 EKTSVIKL-------QVGLLGMARSLQSDLNRIAETADTSTPEGLNYVLTETILALLRHP 273

Query: 64  DYCISGYSSIDVKRSIEEGEKRFNKLSIEERGKFDEETLVNVNSIKRQSTSSQRTSGFSN 123
           DYCIS YSS+D+K+SIEEGEKRFN+LSIEERGKFDEETLVNVNSIKRQST S R +G+SN
Sbjct: 274 DYCISAYSSVDIKKSIEEGEKRFNQLSIEERGKFDEETLVNVNSIKRQSTRSSRATGYSN 333

Query: 124 EYIVVSFSV 133
           EYIV++  V
Sbjct: 334 EYIVITILV 335

[Close]

BLAST of Cucsa.332310 vs. TAIR10
Match: AT1G54520.1 (AT1G54520.1 unknown protein)

HSP 1 Score: 179.5 bits (454), Expect = 1.4e-45
Identity = 89/110 (80.91%), Postives = 100/110 (90.91%), Query Frame = 1


Query: 20  VGLLGMGRGLQRDLNRIAESADTSTPEGLCYVLTETILALLRHPDYCISGYSSIDVKRSI 79
           VGLLG+GR LQ+D NR+AES+DTSTPEGL YVLTE  LALLRHPDYCIS YSS+DVK SI
Sbjct: 216 VGLLGLGRTLQQDFNRLAESSDTSTPEGLSYVLTEATLALLRHPDYCISCYSSVDVKPSI 275

Query: 80  EEGEKRFNKLSIEERGKFDEETLVNVNSIKRQSTSSQRTSGFSNEYIVVS 130
           E+GEKRFN+LSIEERGKFDEETLVNVNSIKRQS+  ++ SGFSNEYIVV+
Sbjct: 276 EKGEKRFNQLSIEERGKFDEETLVNVNSIKRQSSKIRKASGFSNEYIVVT 325

[Close]

BLAST of Cucsa.332310 vs. NCBI nr
Match: gi|449449537|ref|XP_004142521.1| (PREDICTED: uncharacterized protein LOC101210275 [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 2.9e-53
Identity = 109/113 (96.46%), Postives = 111/113 (98.23%), Query Frame = 1


Query: 20  VGLLGMGRGLQRDLNRIAESADTSTPEGLCYVLTETILALLRHPDYCISGYSSIDVKRSI 79
           VGLLGMGRGLQRDLNRIAESADTSTPEGLCYVLTETILALLRHPDYCISGYSSIDVKRSI
Sbjct: 231 VGLLGMGRGLQRDLNRIAESADTSTPEGLCYVLTETILALLRHPDYCISGYSSIDVKRSI 290

Query: 80  EEGEKRFNKLSIEERGKFDEETLVNVNSIKRQSTSSQRTSGFSNEYIVVSFSV 133
           EEGEKRFNKLSIEERGKFDEETLVNVNSIKRQSTSSQRTSGFSNEYIV++  V
Sbjct: 291 EEGEKRFNKLSIEERGKFDEETLVNVNSIKRQSTSSQRTSGFSNEYIVITILV 343

[Close]

BLAST of Cucsa.332310 vs. NCBI nr
Match: gi|700211709|gb|KGN66805.1| (hypothetical protein Csa_1G695400 [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 2.9e-53
Identity = 109/113 (96.46%), Postives = 111/113 (98.23%), Query Frame = 1


Query: 20  VGLLGMGRGLQRDLNRIAESADTSTPEGLCYVLTETILALLRHPDYCISGYSSIDVKRSI 79
           VGLLGMGRGLQRDLNRIAESADTSTPEGLCYVLTETILALLRHPDYCISGYSSIDVKRSI
Sbjct: 49  VGLLGMGRGLQRDLNRIAESADTSTPEGLCYVLTETILALLRHPDYCISGYSSIDVKRSI 108

Query: 80  EEGEKRFNKLSIEERGKFDEETLVNVNSIKRQSTSSQRTSGFSNEYIVVSFSV 133
           EEGEKRFNKLSIEERGKFDEETLVNVNSIKRQSTSSQRTSGFSNEYIV++  V
Sbjct: 109 EEGEKRFNKLSIEERGKFDEETLVNVNSIKRQSTSSQRTSGFSNEYIVITILV 161

[Close]

BLAST of Cucsa.332310 vs. NCBI nr
Match: gi|659125607|ref|XP_008462772.1| (PREDICTED: uncharacterized protein LOC103501059, partial [Cucumis melo])

HSP 1 Score: 215.3 bits (547), Expect = 6.5e-53
Identity = 108/113 (95.58%), Postives = 111/113 (98.23%), Query Frame = 1


Query: 20  VGLLGMGRGLQRDLNRIAESADTSTPEGLCYVLTETILALLRHPDYCISGYSSIDVKRSI 79
           VGLLGMGRGLQRDLNRIAESADTSTPEGLCYVLTETILALLRHPDYCISGYSS+DVKRSI
Sbjct: 3   VGLLGMGRGLQRDLNRIAESADTSTPEGLCYVLTETILALLRHPDYCISGYSSMDVKRSI 62

Query: 80  EEGEKRFNKLSIEERGKFDEETLVNVNSIKRQSTSSQRTSGFSNEYIVVSFSV 133
           EEGEKRFNKLSIEERGKFDEETLVNVNSIKRQSTSSQRTSGFSNEYIV++  V
Sbjct: 63  EEGEKRFNKLSIEERGKFDEETLVNVNSIKRQSTSSQRTSGFSNEYIVITILV 115

[Close]

BLAST of Cucsa.332310 vs. NCBI nr
Match: gi|703076158|ref|XP_010090270.1| (hypothetical protein L484_006177 [Morus notabilis])

HSP 1 Score: 200.3 bits (508), Expect = 2.1e-48
Identity = 102/129 (79.07%), Postives = 112/129 (86.82%), Query Frame = 1


Query: 4   EKIKVMKFIFVIGETNVGLLGMGRGLQRDLNRIAESADTSTPEGLCYVLTETILALLRHP 63
           EK  V+K         VGLLGMGR LQRDLNRIAE+ADTSTPEGL YVLTET LALLRHP
Sbjct: 220 EKTSVLK-------VQVGLLGMGRALQRDLNRIAETADTSTPEGLSYVLTETTLALLRHP 279

Query: 64  DYCISGYSSIDVKRSIEEGEKRFNKLSIEERGKFDEETLVNVNSIKRQSTSSQRTSGFSN 123
           DYCISGYSS+D+KRS+E+GEKRFN+LSIEERGKFDEETLVNVN+IKRQST+SQR SGFSN
Sbjct: 280 DYCISGYSSVDIKRSMEDGEKRFNQLSIEERGKFDEETLVNVNNIKRQSTTSQRASGFSN 339

Query: 124 EYIVVSFSV 133
           EYIV+S  V
Sbjct: 340 EYIVISILV 341

[Close]

BLAST of Cucsa.332310 vs. NCBI nr
Match: gi|357512223|ref|XP_003626400.1| (plant/F20D21-34 protein [Medicago truncatula])

HSP 1 Score: 192.6 bits (488), Expect = 4.5e-46
Identity = 94/110 (85.45%), Postives = 104/110 (94.55%), Query Frame = 1


Query: 20  VGLLGMGRGLQRDLNRIAESADTSTPEGLCYVLTETILALLRHPDYCISGYSSIDVKRSI 79
           VGLLGMGR LQRDLNRIAE ADTS+PEGL Y+LTET LALLRHPDYCISGYSS+D+KR I
Sbjct: 215 VGLLGMGRSLQRDLNRIAEVADTSSPEGLNYILTETSLALLRHPDYCISGYSSVDIKRGI 274

Query: 80  EEGEKRFNKLSIEERGKFDEETLVNVNSIKRQSTSSQRTSGFSNEYIVVS 130
           EEGEKRFN+LSIEERGKFDEETLVNVN+IKRQST SQR++GFSNEYIV++
Sbjct: 275 EEGEKRFNQLSIEERGKFDEETLVNVNNIKRQSTRSQRSNGFSNEYIVIT 324

The following BLAST results are available for this feature:

BLAST of Cucsa.332310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY57_CUCSA	2.0e-53	96.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G695400 PE=4 SV=1	[more]
W9R6R7_9ROSA	1.5e-48	79.07	Uncharacterized protein OS=Morus notabilis GN=L484_006177 PE=4 SV=1	[more]
G7L0U7_MEDTR	3.1e-46	85.45	Plant/F20D21-34 protein OS=Medicago truncatula GN=MTR_7g114660 PE=4 SV=1	[more]
A0A151TXM9_CAJCA	4.1e-46	86.36	Uncharacterized protein OS=Cajanus cajan GN=KK1_011101 PE=4 SV=1	[more]
A0A0J8CIQ2_BETVU	1.5e-45	75.97	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g082310 PE=4 S...	[more]

BLAST of Cucsa.332310 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54520.1	1.4e-45	80.91	unknown protein	[more]

BLAST of Cucsa.332310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449537\|ref\|XP_004142521.1\|	2.9e-53	96.46	PREDICTED: uncharacterized protein LOC101210275 [Cucumis sativus]	[more]
gi\|700211709\|gb\|KGN66805.1\|	2.9e-53	96.46	hypothetical protein Csa_1G695400 [Cucumis sativus]	[more]
gi\|659125607\|ref\|XP_008462772.1\|	6.5e-53	95.58	PREDICTED: uncharacterized protein LOC103501059, partial [Cucumis melo]	[more]
gi\|703076158\|ref\|XP_010090270.1\|	2.1e-48	79.07	hypothetical protein L484_006177 [Morus notabilis]	[more]
gi\|357512223\|ref\|XP_003626400.1\|	4.5e-46	85.45	plant/F20D21-34 protein [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010903	DUF1517

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.332310.1	Cucsa.332310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010903	Protein of unknown function DUF1517	PFAM	PF07466	DUF1517	coord: 18..130 score: 5.4
None	No IPR available	PANTHER	PTHR33975	FAMILY NOT NAMED	coord: 20..128 score: 4.8
None	No IPR available	PANTHER	PTHR33975:SF2	SUBFAMILY NOT NAMED	coord: 20..128 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.332310	Cucumber (Chinese Long) v3	cgycucB513
Cucsa.332310	Watermelon (97103) v2	cgywmbB576
Cucsa.332310	Wax gourd	cgywgoB669
Cucsa.332310	Wild cucumber (PI 183967)	cgycpiB496
Cucsa.332310	Cucumber (Chinese Long) v2	cgycuB470
Cucsa.332310	Melon (DHL92) v3.5.1	cgymeB544
Cucsa.332310	Watermelon (Charleston Gray)	cgywcgB572
Cucsa.332310	Watermelon (97103) v1	cgywmB601
Cucsa.332310	Bottle gourd (USVL1VR-Ls)	cgylsiB540
Cucsa.332310	Melon (DHL92) v3.6.1	cgymedB545