Cucsa.319790 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.319790
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	scaffold03078 : 469776 .. 474170 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGTATATTAAAGATAGTCAATTCATTTGATGCAACATTGAATGATAAGAAGTATAAGTGAAGACCACAAGATTGAAGATCTGATGAATTAATTCAAGGGAAGCCTGAATTCATCTTCGAGGAGATTTGGGATTACCTTCAGAGGGGCCTGATTTTATTTTAAGTTGTGGTGATAACTTATCAAAGTAGCTTTAAATTTAAATTACTGACTTTTGAATCTCAATAGTATTTCTTATATCTAAGCAAAGAAACTCCCTAGACATTGGGTGAACTTGTCGAATTAGGTTACAAAAGCCTTCTGTGTTATCTGTTACTTTTGTGTTTTAACTATTCTTCTAGTTAATTACTTTAAATATAGCTAAAGATTATTTTTTATCATCTTACTTATTTTAATTGGTATTAGGACGGGTTCAGTATCTATAGAGACACTCAGAGGAGGTAGATTGACTACTAGACCACCTATACTTGATGGTAAAAACTATTCATATCGAAAAACTCGTATGACTTCGTTTATTAAGTTTATTGATATGAAGGCCTCGATGGTTGTTACTGTTGGGTGGAAGCCACTTATGATTACTGTTGATGGTAAATCTGTTCAAAAGCCTGAAAGGATTGGACAGATGCAGAAAAGCAAGCCTCATTAGGAAGGTCTCGAGCTCTAAATGCCATATACAATGGAGTAGATTTACATGTGTTCAAACTGATAAATTCTTGCAGTACTGCAAAAGACGCGTGGAAAGCACTTTAATTGGCATTTAAAGGTACTTCTAAAGTAAAGATCTCTCGTCTGCAACTTTTAACGTCTAAGTCTGAAACCTTGAGAATGATGGAAGAAGAGACCATCGCTGAATATAATGTGAGGGTTCTGGAAATCGCAAATGACTCCTTTAATTTTGGTGAGGGAACCCCAAAATCCAAACTTGTCAAAAAGGTGTTGCGATCAATGCCTAGAAAGTTTGATATGAAAGTTATGGTCATTGAAGAAGCACATGATATCACTACTCTGACACTAGATGAATTATTTGGATCTTTGTGTGCTTTCAAAATTGTTATATTTGATAGAGTAGACAATAAATGGAAATAGATTGTCTTTCAATTTGTTCATGAAGACGTATGCTTTGAGAAAGGAAAATATTCAAATGAACAAGTAAATGAGTCCATCACTATGTTGACCAAACAATATTCTAATATTATAAAAAAATTCAGAGATCTAAACAACTATGCGTCAAATAATTGAGAACAAAATAATTATAGAAGGAGAGATTTTGAAGAACAAAATGGCAGGGAGAAGAGATTTTTTAAATGCAATGAATGTGGTGGGAATGACCTTTATCAAGCTGGATGTCCAACTTATCTGAGGAGACAAAAGAAAAGTTTTGGTGTCACTCTCTCTGATGAAGAATCGAATGGAAGTGAAGAGGAAGAAGAATTTTCCAATGCATTTATCAGTATTATATCTAAAGGTGATCTTGTGTCTGATACGGAAGACATCGACTGTCAAATCGAGAATAATATGTCTTTTGATCAAATAGACAACAGTGGAAGGAGGATTCCTTAGCTCGGGCTATTCAGAAAGAAAAAATTCAAGAATTGATTGATGAAAATCAAAGATTACTAACTGTCATATCTGTTGGCTTTTTGGCCCTTAATCTCAAATTAATTTATTTTAATTATTCAATTAATTTATGTTTTGATGATAACAAATCTAATTTTTTTTATTGACAATTTTATTAATTTGAATAGACCATATCGTATAGCTTGGAAGAATGATTCTAACGCCTCTTGAATCACCCAAATCGAAGTTCAAATGAAGAAAATATTGCTAAAAGAAGCTTCACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAGGGTTGCCATACCAATCCAACAATATCATCATTGAAGCTGAAATTAAAAGAAGCTCAAGCAGTGTCACACCATAAACCGTATGACGAGGAAAAGCCGAACTAGTAAAAATAGGGTGCGAGTTTGTTACAACCTTGAAATTTTCTTATTGCAAAATCTTATTCTCTACTCCTTTTGAACTATTAATACTCAAAACGTAACGATGGTCAATGTAACGCCAAGCAAATTATATACAAACAAAAGCGTATACTTTATTAGTAACTGGTGTTTCATTATTCCTACTATCTAAACCTTGGAGTCAAAATTTTTCAACCTTCACAATCATCTTCAACAGGCTTTTCTTTGTTTTGAGAGTCTATCGTCACGATCTTTTGTTGGAATCGAACAAGTGTAGATTCAAAAGTCCAATACTGAATCAAGTTTTTCCCTTGATCATAAGGCAATGTTGATGGCAGAACACTTGAAGTCATCTGGACTACAACATGATTCATCTGACTAATGATTCGACTACAACATGAAGTCATTTCACGAGCCAACTTTAGAATCAGCTCCTTCAACAAGAAACACTTTTCAACATGGTGACTAATGACTTGATGATATTTATCGTAGTTAGGATCATCTACTTTTTCTGCTTATTTCGGTCGTTTGCATTCTGACAATTGAATAAATTATTTGTGTAGCAACTGCTCTAACATATTTTCAACATCAGAGTTGGGAAACTGATCAACTTTTTCATATCTTTGGAAGTGTTTGTTATATTCTTGCAAATCCAGAGTATCACAGAAAATGGGATGTCAAGTCAGATAAAAGAATCTTCTTGGGCTATTCTCCTAATAGTCGCGCTTACATAGTGTACAATACACACACTCAATTTGTTACGGAAACCATTAGTATTGTTGTCAACGATGATGAGAAACTCCCACTTAGAGATTGTGATGATGACCAGGCAGTATTGATACAAATTACAATTTGTCCTACCGAATGCATTGTACACTAAACCTTAAATACAAAATATTTAAACCTAAACCTTAAAAACAAAATTCTTTTAGATGTGCCTAAACCTAAACCGAATGCATACTAAATTTAAATTGAAGAACCTTTGATGTTGAGACTAAAACAAAGAATCTGGTGCATCTTGTTGTTTCATCATCGCATGTCACGAAGAAATCATCCAACGAGTTGTATTATTGTCAATCTCAACAATGGGATCACAACCTAAAAAAAGGATCGAATAGATTACGAAAAGTTAATGGCTAATATTTGTTATATTTCATCTCCTGAACATGTTTCTGTTGCAGATGCACTTAAAGATGAGTTCTGGATAAATGCAACGCAAGAAGAACTCTTGTTGTTTCAAAGAAATAATGTCTAGACCTTGGTGCCTAAACCTAAACATGTTAATGTCATTGACACAAAGTGGATATTTAAAAACAAAATTGATGAACAAGGTTGTGTTACAAGAAAAAAGGATAGATTGGTTACTCAAGGATACTCTCAAGTTGAAGGCATAGATTTTGATGAAACTTTTGCACCATTAGCTAGACTTGAAGCTATACGATTGTTGCTTGGCATAGCATGTCTGCAAAGGATCAAATTATATCAAATGGATGTCAAGAGTGCCTTCTTAAATGACTACTTACATGAAGAAGTATATGTAGCTCAACCAAAAGGGTTAATAGATCAAGTGTTTTTTCAGCATGTGTACAAATTAAATAAGGCTCTCTATGATCTTAAATAA

mRNA sequence

atgaacacactcagaggaggtagattgactactagaccacctatacttgatggtaaaaactattcatatcgaaaaactcgtatgacttcgtttattaagtttattgatatgaaggcctcgatggttgttactgttgggtggaagccacttatgattactgattggacagatgcagaaaagcaagcctcattaggaaggtctcgagctctaaatgccatatacaatggagtagatttacatgtgttcaaactgataaattcttgcagtacttctaaagtaaagatctctcgtctgcaacttttaacgtctaagtctgaaaccttgagaatgatggaagaagagaccatcgctgaatataatgtgagggttctggaaatcgcaaatgactcctttaattttggtgagggaaccccaaaatccaaacttgtcaaaaaggtgttgcgatcaatgcctagaaagtttgatatgaaagttatggtcattgaagaagcacatgatatcactactctgacactagatgaattatttggatctttgtgtgctttcaaaattgttatatttgatagaagattttttaaatgcaatgaatgtggtgggaatgacctttatcaagctggatgtccaacttatctgaggagacaaaagaaaagttttggtgtcactctctctgatgaagaatcgaatggaagtgaagaggaagaagaattttccaatgcatttatcagtattatatctaaaggtgatcttgtgtctgatacggaagacatcgactgtcaaatcgagaataatatgtcttttgatcaaatagacaacacaactgctctaacatattttcaacatcagagttgggaaactgatcaactttttcatatctttggaagtgtttgttatattcttgcaaatccagagtatcacagaaaatgggatgtcaagtcagataaaagaatcttcttgggctattctcctaatagtcgcgcttacatagtgtacaatacacacactcaatttgttacggaaaccattagtattgttgtcaacgatgatgagaaactcccacttagagattgtgatgatgaccaggcaaccttggtgcctaaacctaaacatgttaatgtcattgacacaaagtggatatttaaaaacaaaattgatgaacaaggttgtgttacaagaaaaaaggatagattggttactcaaggatactctcaagttgaaggcatagattttgatgaaacttttgcaccattagctagacttgaagctatacgattgttgcttggcatagcatgtctgcaaaggatcaaattatatcaaatggatgtcaagagtgccttcttaaatgactacttacatgaagaagtatatgtagctcaaccaaaagggttaatagatcaagtgttttttcagcatgtgtacaaattaaataaggctctctatgatcttaaataa

Coding sequence (CDS)

ATGAACACACTCAGAGGAGGTAGATTGACTACTAGACCACCTATACTTGATGGTAAAAACTATTCATATCGAAAAACTCGTATGACTTCGTTTATTAAGTTTATTGATATGAAGGCCTCGATGGTTGTTACTGTTGGGTGGAAGCCACTTATGATTACTGATTGGACAGATGCAGAAAAGCAAGCCTCATTAGGAAGGTCTCGAGCTCTAAATGCCATATACAATGGAGTAGATTTACATGTGTTCAAACTGATAAATTCTTGCAGTACTTCTAAAGTAAAGATCTCTCGTCTGCAACTTTTAACGTCTAAGTCTGAAACCTTGAGAATGATGGAAGAAGAGACCATCGCTGAATATAATGTGAGGGTTCTGGAAATCGCAAATGACTCCTTTAATTTTGGTGAGGGAACCCCAAAATCCAAACTTGTCAAAAAGGTGTTGCGATCAATGCCTAGAAAGTTTGATATGAAAGTTATGGTCATTGAAGAAGCACATGATATCACTACTCTGACACTAGATGAATTATTTGGATCTTTGTGTGCTTTCAAAATTGTTATATTTGATAGAAGATTTTTTAAATGCAATGAATGTGGTGGGAATGACCTTTATCAAGCTGGATGTCCAACTTATCTGAGGAGACAAAAGAAAAGTTTTGGTGTCACTCTCTCTGATGAAGAATCGAATGGAAGTGAAGAGGAAGAAGAATTTTCCAATGCATTTATCAGTATTATATCTAAAGGTGATCTTGTGTCTGATACGGAAGACATCGACTGTCAAATCGAGAATAATATGTCTTTTGATCAAATAGACAACACAACTGCTCTAACATATTTTCAACATCAGAGTTGGGAAACTGATCAACTTTTTCATATCTTTGGAAGTGTTTGTTATATTCTTGCAAATCCAGAGTATCACAGAAAATGGGATGTCAAGTCAGATAAAAGAATCTTCTTGGGCTATTCTCCTAATAGTCGCGCTTACATAGTGTACAATACACACACTCAATTTGTTACGGAAACCATTAGTATTGTTGTCAACGATGATGAGAAACTCCCACTTAGAGATTGTGATGATGACCAGGCAACCTTGGTGCCTAAACCTAAACATGTTAATGTCATTGACACAAAGTGGATATTTAAAAACAAAATTGATGAACAAGGTTGTGTTACAAGAAAAAAGGATAGATTGGTTACTCAAGGATACTCTCAAGTTGAAGGCATAGATTTTGATGAAACTTTTGCACCATTAGCTAGACTTGAAGCTATACGATTGTTGCTTGGCATAGCATGTCTGCAAAGGATCAAATTATATCAAATGGATGTCAAGAGTGCCTTCTTAAATGACTACTTACATGAAGAAGTATATGTAGCTCAACCAAAAGGGTTAATAGATCAAGTGTTTTTTCAGCATGTGTACAAATTAAATAAGGCTCTCTATGATCTTAAATAA

Protein sequence

MNTLRGGRLTTRPPILDGKNYSYRKTRMTSFIKFIDMKASMVVTVGWKPLMITDWTDAEKQASLGRSRALNAIYNGVDLHVFKLINSCSTSKVKISRLQLLTSKSETLRMMEEETIAEYNVRVLEIANDSFNFGEGTPKSKLVKKVLRSMPRKFDMKVMVIEEAHDITTLTLDELFGSLCAFKIVIFDRRFFKCNECGGNDLYQAGCPTYLRRQKKSFGVTLSDEESNGSEEEEEFSNAFISIISKGDLVSDTEDIDCQIENNMSFDQIDNTTALTYFQHQSWETDQLFHIFGSVCYILANPEYHRKWDVKSDKRIFLGYSPNSRAYIVYNTHTQFVTETISIVVNDDEKLPLRDCDDDQATLVPKPKHVNVIDTKWIFKNKIDEQGCVTRKKDRLVTQGYSQVEGIDFDETFAPLARLEAIRLLLGIACLQRIKLYQMDVKSAFLNDYLHEEVYVAQPKGLIDQVFFQHVYKLNKALYDLK*

Homology

[Close]

BLAST of Cucsa.319790 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 111.7 bits (278), Expect = 2.3e-23
Identity = 64/184 (34.78%), Postives = 104/184 (56.52%), Query Frame = 1


Query: 310  VKSDKRIFLGYSPNSRAYIVYNTHTQF--VTETISIVVNDDEKLPLRDCDDDQA------ 369
            +K+  +I      NS   +V N HT F  V  +   +   D+K    +  + +       
Sbjct: 861  LKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKIN 920

Query: 370  ---TLVPKPKHVNVIDTKWIFKNKIDEQGCVTRKKDRLVTQGYSQVEGIDFDETFAPLAR 429
               T+  +P++ N++D++W+F  K +E G   R K RLV +G++Q   ID++ETFAP+AR
Sbjct: 921  NTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVAR 980

Query: 430  LEAIRLLLGIACLQRIKLYQMDVKSAFLNDYLHEEVYVAQPKGLIDQVFFQHVYKLNKAL 483
            + + R +L +     +K++QMDVK+AFLN  L EE+Y+  P+G+       +V KLNKA+
Sbjct: 981  ISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI--SCNSDNVCKLNKAI 1040

[Close]

BLAST of Cucsa.319790 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.8e-19
Identity = 52/120 (43.33%), Postives = 75/120 (62.50%), Query Frame = 1


Query: 363 LVPKPKHVNVIDTKWIFKNKIDEQGCVTRKKDRLVTQGYSQVEGIDFDETFAPLARLEAI 422
           LV  PK    +  KW+FK K D    + R K RLV +G+ Q +GIDFDE F+P+ ++ +I
Sbjct: 845 LVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSI 904

Query: 423 RLLLGIACLQRIKLYQMDVKSAFLNDYLHEEVYVAQPKGLIDQVFFQHVYKLNKALYDLK 482
           R +L +A    +++ Q+DVK+AFL+  L EE+Y+ QP+G         V KLNK+LY LK
Sbjct: 905 RTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLK 964

[Close]

BLAST of Cucsa.319790 vs. Swiss-Prot
Match: M820_ARATH (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-09
Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 1


Query: 363 LVPKPKHVNVIDTKWIFKNKIDEQGCVTRKKDRLVTQGYSQVEGIDFDETFAPLARLEAI 422
           LVP P + N++  KW+FK K+   G + R K RLV +G+ Q EGI F ET++P+ R   I
Sbjct: 59  LVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATI 118

Query: 423 RLLLGIA 430
           R +L +A
Sbjct: 119 RTILNVA 125

[Close]

BLAST of Cucsa.319790 vs. TrEMBL
Match: A2Q5V4_MEDTR (Gag-pol polyprotein, putative OS=Medicago truncatula GN=MtrDRAFT_AC169177g29v1 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 7.5e-42
Identity = 86/120 (71.67%), Postives = 99/120 (82.50%), Query Frame = 1


Query: 363 LVPKPKHVNVIDTKWIFKNKIDEQGCVTRKKDRLVTQGYSQVEGIDFDETFAPLARLEAI 422
           LVP+P  +NVI TKWI+KNK DE G +TR K RLV QGY+QVE +DFDETFAP+ARLE+I
Sbjct: 16  LVPRPNDINVIGTKWIYKNKSDENGIITRNKARLVAQGYTQVERLDFDETFAPVARLESI 75

Query: 423 RLLLGIACLQRIKLYQMDVKSAFLNDYLHEEVYVAQPKGLIDQVFFQHVYKLNKALYDLK 482
           RLLLG+AC+ + KL+QMDVKSAFLN YLHEEV+V QPKG ID  F  HVYKL KALY LK
Sbjct: 76  RLLLGVACILKFKLFQMDVKSAFLNGYLHEEVFVEQPKGFIDPNFPDHVYKLKKALYGLK 135

[Close]

BLAST of Cucsa.319790 vs. TrEMBL
Match: Q84VI0_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 9.9e-42
Identity = 83/120 (69.17%), Postives = 99/120 (82.50%), Query Frame = 1


Query: 363  LVPKPKHVNVIDTKWIFKNKIDEQGCVTRKKDRLVTQGYSQVEGIDFDETFAPLARLEAI 422
            LVP+P+  NVI TKWIFKNK +E+G +TR K RLV QGY+Q+EG+DFDETFAP+ARLE+I
Sbjct: 1099 LVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESI 1158

Query: 423  RLLLGIACLQRIKLYQMDVKSAFLNDYLHEEVYVAQPKGLIDQVFFQHVYKLNKALYDLK 482
            RLLLG+AC+ + KLYQMDVKSAFLN YL+EE YV QPKG +D     HVY+L KALY LK
Sbjct: 1159 RLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHLDHVYRLKKALYGLK 1218

[Close]

BLAST of Cucsa.319790 vs. TrEMBL
Match: Q84VI0_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.9e-41
Identity = 103/240 (42.92%), Postives = 139/240 (57.92%), Query Frame = 1


Query: 1   MNTLRGGRLTTRPPILDGKNYSYRKTRMTSFIKFIDMKASMVVTVGWK-PLMIT------ 60
           MN  + G    RPPILDG NY Y K RM +F+K +D +    V  GW+ P M+       
Sbjct: 1   MNMEKEGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  -------DWTDAEKQASLGRSRALNAIYNGVDLHVFKLINSCS----------------T 120
                  DWT  E + +LG S+ALNA++NGVD ++F+LIN+C+                T
Sbjct: 61  NELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDACGEILKTTHEGT 120

Query: 121 SKVKISRLQLLTSKSETLRMMEEETIAEYNVRVLEIANDSFNFGEGTPKSKLVKKVLRSM 180
           SKVK+SRLQLL +K E L+M EEE I ++++ +LEIAN     GE     KLV+K+LRS+
Sbjct: 121 SKVKMSRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSL 180

Query: 181 PRKFDMKVMVIEEAHDITTLTLDELFGSLCAFKIVIFDRR-------FFKCNECGGNDLY 204
           P++FDMKV  IEEA DI  + +DEL GSL  F++ + DR         F  N+ G  D Y
Sbjct: 181 PKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRNEKKSKNLAFVSNDEGEEDEY 240

HSP 2 Score: 84.3 bits (207), Expect = 4.3e-13
Identity = 52/128 (40.62%), Postives = 74/128 (57.81%), Query Frame = 1


Query: 248  DLVSDTEDIDCQIENNMSFDQIDNTTALTYFQHQSWETDQLFHIFGSVCYILANPEYHRK 307
            +L ++  +  C I N ++  +   TT    ++ +   T + FHIFGS CYILA+ E  RK
Sbjct: 879  NLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRK-PTVKHFHIFGSPCYILADREQRRK 938

Query: 308  WDVKSDKRIFLGYSPNSRAYIVYNTHTQFVTETISIVVNDDEKLPLRDCDDDQATLVPKP 367
             D KSD  IFLGYS NSRAY V+N+ T+ V E+I++VV+D      +D ++D  T     
Sbjct: 939  MDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTPARKKDVEEDVRT----- 998

Query: 368  KHVNVIDT 376
               NV DT
Sbjct: 999  SEDNVADT 1000

HSP 3 Score: 178.7 bits (452), Expect = 1.7e-41
Identity = 99/218 (45.41%), Postives = 133/218 (61.01%), Query Frame = 1


Query: 1   MNTLRGGRLTTRPPILDGKNYSYRKTRMTSFIKFIDMKASMVVTVGWK-PLMIT------ 60
           MN  + G    RPPILDG NY Y K RM +F+K +D +    V  GW+ P M+       
Sbjct: 1   MNMEKEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  -------DWTDAEKQASLGRSRALNAIYNGVDLHVFKLINSCS---------------TS 120
                  DWT  E + +LG S+ALNA++NGVD ++F+LIN+C+               TS
Sbjct: 61  DELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTS 120

Query: 121 KVKISRLQLLTSKSETLRMMEEETIAEYNVRVLEIANDSFNFGEGTPKSKLVKKVLRSMP 180
           KVKISRLQLL +K E L+M EEE I ++++ +LEIAN     GE     KLV+K+LRS+P
Sbjct: 121 KVKISRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLP 180

Query: 181 RKFDMKVMVIEEAHDITTLTLDELFGSLCAFKIVIFDR 190
           ++FDMKV  IEEA DI  + +DEL GSL  F++ + DR
Sbjct: 181 KRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDR 218

[Close]

BLAST of Cucsa.319790 vs. TrEMBL
Match: Q84VI4_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.9e-41
Identity = 84/120 (70.00%), Postives = 99/120 (82.50%), Query Frame = 1


Query: 363  LVPKPKHVNVIDTKWIFKNKIDEQGCVTRKKDRLVTQGYSQVEGIDFDETFAPLARLEAI 422
            LVP+P+  NVI TKWIFKNK +E+G +TR K RLV QGY+Q+EG+DFDETFAP+ARLE+I
Sbjct: 1097 LVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESI 1156

Query: 423  RLLLGIACLQRIKLYQMDVKSAFLNDYLHEEVYVAQPKGLIDQVFFQHVYKLNKALYDLK 482
            RLLLG+AC+ + KLYQMDVKSAFLN YL+EEVYV QPKG  D     HVY+L KALY LK
Sbjct: 1157 RLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLK 1216

HSP 2 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 1


Query: 248 DLVSDTEDIDCQIENNMSFDQIDNTTALTYFQHQSWETDQLFHIFGSVCYILANPEYHRK 307
           +L ++  +  C I N ++  +   TT    ++ +       FHIFGS CYILA+ E  RK
Sbjct: 877 NLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKH-FHIFGSPCYILADREQRRK 936

Query: 308 WDVKSDKRIFLGYSPNSRAYIVYNTHTQFVTETISIVVNDDEKLPLRDCDDDQAT 363
            D KSD  IFLGYS NSRAY V+N+ T+ V E+I++VV+D      +D ++D  T
Sbjct: 937 MDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPARKKDVEEDVRT 990

HSP 3 Score: 177.9 bits (450), Expect = 2.9e-41
Identity = 83/120 (69.17%), Postives = 99/120 (82.50%), Query Frame = 1


Query: 363  LVPKPKHVNVIDTKWIFKNKIDEQGCVTRKKDRLVTQGYSQVEGIDFDETFAPLARLEAI 422
            LVP+P+  NVI TKWIFKNK +E+G +TR K RLV QGY+Q+EG+DFDETFAP+ARLE+I
Sbjct: 1100 LVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESI 1159

Query: 423  RLLLGIACLQRIKLYQMDVKSAFLNDYLHEEVYVAQPKGLIDQVFFQHVYKLNKALYDLK 482
            RLLLG+AC+ + KLYQMDVKSAFLN YL+EE YV QPKG +D     HVY+L KALY LK
Sbjct: 1160 RLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLK 1219

[Close]

BLAST of Cucsa.319790 vs. TrEMBL
Match: Q84VH6_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 6.4e-41
Identity = 98/218 (44.95%), Postives = 133/218 (61.01%), Query Frame = 1


Query: 1   MNTLRGGRLTTRPPILDGKNYSYRKTRMTSFIKFIDMKASMVVTVGWK-PLMIT------ 60
           MN  + G    RPPILDG NY Y K RM +F+K +D +    V  GW+ P M+       
Sbjct: 1   MNMEKEGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  -------DWTDAEKQASLGRSRALNAIYNGVDLHVFKLINSCS---------------TS 120
                  DWT  E + +LG S+ALNA++NGVD ++F+LIN+C+               TS
Sbjct: 61  NELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTS 120

Query: 121 KVKISRLQLLTSKSETLRMMEEETIAEYNVRVLEIANDSFNFGEGTPKSKLVKKVLRSMP 180
           KVK+SRLQLL +K E L+M EEE I ++++ +LEIAN     GE     KLV+K+LRS+P
Sbjct: 121 KVKMSRLQLLATKFENLKMKEEECIHDFHMTILEIANACTALGERMTDEKLVRKILRSLP 180

Query: 181 RKFDMKVMVIEEAHDITTLTLDELFGSLCAFKIVIFDR 190
           ++FDMKV  IEEA DI  + +DEL GSL  F++ + DR
Sbjct: 181 KRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDR 218

HSP 2 Score: 84.0 bits (206), Expect = 5.6e-13
Identity = 48/115 (41.74%), Postives = 70/115 (60.87%), Query Frame = 1


Query: 248 DLVSDTEDIDCQIENNMSFDQIDNTTALTYFQHQSWETDQLFHIFGSVCYILANPEYHRK 307
           +L ++  +  C I N ++  +   TT    ++ +   T + FHIFGS CYILA+ E  RK
Sbjct: 880 NLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRK-PTVKHFHIFGSPCYILADREQRRK 939

Query: 308 WDVKSDKRIFLGYSPNSRAYIVYNTHTQFVTETISIVVNDDEKLPLRDCDDDQAT 363
            D KSD  IFLGYS NSRAY V+N+ T+ V E+I++VV+D      +D ++D  T
Sbjct: 940 MDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTPARKKDVEEDVRT 993

HSP 3 Score: 41.2 bits (95), Expect = 4.2e+00
Identity = 22/77 (28.57%), Postives = 40/77 (51.95%), Query Frame = 1


Query: 193 KCNECGGNDLYQAGCPTYLRRQKKSFGVTLSDEESNGSEEEEEFSNAFISIISKGDLVSD 252
           +C  C G    +A CPT+L++Q+K   V  SD+    SE+E +      ++  + +   D
Sbjct: 301 QCRGCEGYGHIKAECPTHLKKQRKGLSVCRSDDTE--SEQESDSDRDVNALTGRFESAED 360

Query: 253 TEDIDCQIENNMSFDQI 270
           + D D +I    +FD++
Sbjct: 361 SSDTDSEI----TFDEL 371

HSP 4 Score: 177.9 bits (450), Expect = 2.9e-41
Identity = 84/120 (70.00%), Postives = 99/120 (82.50%), Query Frame = 1


Query: 363  LVPKPKHVNVIDTKWIFKNKIDEQGCVTRKKDRLVTQGYSQVEGIDFDETFAPLARLEAI 422
            LVP+P+  NVI TKWIFKNK +E+G +TR K RLV QGY+Q+EG+DFDETFAP+ARLE+I
Sbjct: 1099 LVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESI 1158

Query: 423  RLLLGIACLQRIKLYQMDVKSAFLNDYLHEEVYVAQPKGLIDQVFFQHVYKLNKALYDLK 482
            RLLLG+AC+ + KLYQMDVKSAFLN YL+EEVYV QPKG  D     HVY+L KALY LK
Sbjct: 1159 RLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLK 1218

[Close]

BLAST of Cucsa.319790 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 94.0 bits (232), Expect = 2.8e-19
Identity = 48/120 (40.00%), Postives = 73/120 (60.83%), Query Frame = 1


Query: 367 PKHVNVIDTKWIFKNKIDEQGCVTRKKDRLVTQGYSQVEGIDFDETFAPLARLEAIRLLL 426
           P +   I  KW++K K +  G + R K RLV +GY+Q EGIDF ETF+P+ +L +++L+L
Sbjct: 121 PPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLIL 180

Query: 427 GIACLQRIKLYQMDVKSAFLNDYLHEEVYVAQPKGLI----DQVFFQHVYKLNKALYDLK 483
            I+ +    L+Q+D+ +AFLN  L EE+Y+  P G      D +    V  L K++Y LK
Sbjct: 181 AISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLK 240

[Close]

BLAST of Cucsa.319790 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 66.2 bits (160), Expect = 6.2e-11
Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 1


Query: 363 LVPKPKHVNVIDTKWIFKNKIDEQGCVTRKKDRLVTQGYSQVEGIDFDETFAPLARLEAI 422
           LVP P + N++  KW+FK K+   G + R K RLV +G+ Q EGI F ET++P+ R   I
Sbjct: 59  LVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATI 118

Query: 423 RLLLGIA 430
           R +L +A
Sbjct: 119 RTILNVA 125

[Close]

BLAST of Cucsa.319790 vs. NCBI nr
Match: gi|659126719|ref|XP_008463331.1| (PREDICTED: uncharacterized protein LOC103501512 [Cucumis melo])

HSP 1 Score: 183.3 bits (464), Expect = 9.8e-43
Identity = 102/190 (53.68%), Postives = 127/190 (66.84%), Query Frame = 1


Query: 1   MNTLRGGRLTTRPPILDGKNYSYRKTRMTSFIKFIDMKASMVVTVGWKPLMIT------- 60
           M  +R G   +RPP+LDGKNYSY K RM   IK +D KA   +  G++P M+T       
Sbjct: 1   MEIIREGPSASRPPVLDGKNYSYWKPRMIFSIKTLDGKAWRALVAGYEPPMVTMDEVSVL 60

Query: 61  ----DWTDAEKQASLGRSRALNAIYNGVDLHVFKLINSCST---------------SKVK 120
               DWTD E+QAS+G +RA+NAI+NGVDL+VFKLINSC+T               SKVK
Sbjct: 61  KPEVDWTDVEEQASVGNARAINAIFNGVDLNVFKLINSCTTTKEAWKILEVAYEGTSKVK 120

Query: 121 ISRLQLLTSKSETLRMMEEETIAEYNVRVLEIANDSFNFGEGTPKSKLVKKVLRSMPRKF 165
           IS LQL+TSK E L+M E+E+++EYN RVLEIANDS    E   +SK+V+KVLR + RKF
Sbjct: 121 ISSLQLITSKFEVLKMTEDESVSEYNERVLEIANDSLLLDEKISESKIVRKVLRYLLRKF 180

[Close]

BLAST of Cucsa.319790 vs. NCBI nr
Match: gi|659074589|ref|XP_008437686.1| (PREDICTED: uncharacterized protein LOC103483027 [Cucumis melo])

HSP 1 Score: 180.3 bits (456), Expect = 8.3e-42
Identity = 100/197 (50.76%), Postives = 128/197 (64.97%), Query Frame = 1


Query: 1   MNTLRGGRLTTRPPILDGKNYSYRKTRMTSFIKFIDMKASMVVTVGWKPLMIT------- 60
           M  +R G   + PP+LDGKNYSY K  M  FIK +D KA  V+  G++P M+T       
Sbjct: 1   MEIIREGPSASHPPVLDGKNYSYWKPHMIFFIKTLDGKAWRVLVGGYEPPMVTVNEVLVP 60

Query: 61  ----DWTDAEKQASLGRSRALNAIYNGVDLHVFKLINSCSTSKVKISRLQLLTSKSETLR 120
               +WTDAE+QAS+G +RA+NAI+ GVDL+                   L+TSK E L+
Sbjct: 61  KPEINWTDAEEQASVGNARAINAIFKGVDLN-------------------LITSKFEALK 120

Query: 121 MMEEETIAEYNVRVLEIANDSFNFGEGTPKSKLVKKVLRSMPRKFDMKVMVIEEAHDITT 180
           M E+E+++EYN RVLEIANDS   GE   +SK+V KVLRS+PRK DMKV+ IEEA DITT
Sbjct: 121 MTEDESVSEYNERVLEIANDSLLLGEKISESKIVCKVLRSLPRKLDMKVIAIEEAQDITT 178

Query: 181 LTLDELFGSLCAFKIVI 187
           L LDELFGSL  F++ +
Sbjct: 181 LKLDELFGSLLTFEMAV 178

[Close]

BLAST of Cucsa.319790 vs. NCBI nr
Match: gi|659129653|ref|XP_008464774.1| (PREDICTED: uncharacterized protein LOC103502582 [Cucumis melo])

HSP 1 Score: 180.3 bits (456), Expect = 8.3e-42
Identity = 88/121 (72.73%), Postives = 100/121 (82.64%), Query Frame = 1


Query: 362 TLVPKPKHVNVIDTKWIFKNKIDEQGCVTRKKDRLVTQGYSQVEGIDFDETFAPLARLEA 421
           TLV KP+ VNVI TKWIFKNK DE GC T+ K R V Q Y+QVEG+DFDETF+P+ARLEA
Sbjct: 323 TLVSKPEGVNVIGTKWIFKNKTDESGCGTKNKARSVAQRYTQVEGVDFDETFSPVARLEA 382

Query: 422 IRLLLGIACLQRIKLYQMDVKSAFLNDYLHEEVYVAQPKGLIDQVFFQHVYKLNKALYDL 481
           IRLLLGI+C+ + KLYQMDVKSAFLN YL+EEVYVAQ KG +D    +HVYKLNKALY L
Sbjct: 383 IRLLLGISCIHKFKLYQMDVKSAFLNGYLNEEVYVAQRKGFVDSKNLKHVYKLNKALYGL 442

Query: 482 K 483
           K
Sbjct: 443 K 443

[Close]

BLAST of Cucsa.319790 vs. NCBI nr
Match: gi|659129653|ref|XP_008464774.1| (PREDICTED: uncharacterized protein LOC103502582 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 8.9e-20
Identity = 71/169 (42.01%), Postives = 94/169 (55.62%), Query Frame = 1


Query: 110 MMEEETIAEYNVRVLEIANDSFNFGEGTPKSKLVKKVLRSMPRKFDMKVMVIEEAHDITT 169
           M E+E++++YN RVLEIAN+S    E  P SK+V+KV+RS+P KFDMKV  IEEAHDITT
Sbjct: 1   MNEDESVSDYNKRVLEIANESLLLCETIPDSKIVRKVVRSLPSKFDMKVTAIEEAHDITT 60

Query: 170 LTLDELFGSLCAFKIVIFDRRFFKCNECGGNDLY---QAGCPTYLRRQK------KSFGV 229
           L LDELFGSL  F++   DR   K         +   +AGC T     +      K F  
Sbjct: 61  LKLDELFGSLLTFEMATADRESKKGKGIAFKSTHVSEEAGCDTEANMDESIALLTKQFTN 120

Query: 230 TL--------SDEESNGSEEEEEFSNAFISIISKGDLVSDTEDIDCQIE 262
            L        +DEES  S +++   NAF   I+  +   D+E   C +E
Sbjct: 121 ALQNLKSPNATDEESVDSRDDDGNINAFTIQITDENTDDDSE---CLVE 166

HSP 2 Score: 179.9 bits (455), Expect = 1.1e-41
Identity = 86/120 (71.67%), Postives = 99/120 (82.50%), Query Frame = 1


Query: 363 LVPKPKHVNVIDTKWIFKNKIDEQGCVTRKKDRLVTQGYSQVEGIDFDETFAPLARLEAI 422
           LVP+P  +NVI TKWI+KNK DE G +TR K RLV QGY+QVE +DFDETFAP+ARLE+I
Sbjct: 16  LVPRPNDINVIGTKWIYKNKSDENGIITRNKARLVAQGYTQVERLDFDETFAPVARLESI 75

Query: 423 RLLLGIACLQRIKLYQMDVKSAFLNDYLHEEVYVAQPKGLIDQVFFQHVYKLNKALYDLK 482
           RLLLG+AC+ + KL+QMDVKSAFLN YLHEEV+V QPKG ID  F  HVYKL KALY LK
Sbjct: 76  RLLLGVACILKFKLFQMDVKSAFLNGYLHEEVFVEQPKGFIDPNFPDHVYKLKKALYGLK 135

[Close]

BLAST of Cucsa.319790 vs. NCBI nr
Match: gi|29423276|gb|AAO73525.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 179.5 bits (454), Expect = 1.4e-41
Identity = 83/120 (69.17%), Postives = 99/120 (82.50%), Query Frame = 1


Query: 363  LVPKPKHVNVIDTKWIFKNKIDEQGCVTRKKDRLVTQGYSQVEGIDFDETFAPLARLEAI 422
            LVP+P+  NVI TKWIFKNK +E+G +TR K RLV QGY+Q+EG+DFDETFAP+ARLE+I
Sbjct: 1099 LVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESI 1158

Query: 423  RLLLGIACLQRIKLYQMDVKSAFLNDYLHEEVYVAQPKGLIDQVFFQHVYKLNKALYDLK 482
            RLLLG+AC+ + KLYQMDVKSAFLN YL+EE YV QPKG +D     HVY+L KALY LK
Sbjct: 1159 RLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHLDHVYRLKKALYGLK 1218

The following BLAST results are available for this feature:

BLAST of Cucsa.319790 vs. Swiss-Prot


Match Name	E-value	Identity	Description
COPIA_DROME	2.3e-23	34.78	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
POLX_TOBAC	5.8e-19	43.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
M820_ARATH	1.1e-09	44.78	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg0...	[more]

BLAST of Cucsa.319790 vs. TrEMBL


Match Name	E-value	Identity	Description
A2Q5V4_MEDTR	7.5e-42	71.67	Gag-pol polyprotein, putative OS=Medicago truncatula GN=MtrDRAFT_AC169177g29v1 P...	[more]
Q84VI0_SOYBN	9.9e-42	69.17	Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1	[more]
Q84VI0_SOYBN	4.9e-41	42.92	Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1	[more]
Q84VI4_SOYBN	2.9e-41	70.00	Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1	[more]
Q84VH6_SOYBN	6.4e-41	44.95	Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1	[more]

BLAST of Cucsa.319790 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	2.8e-19	40.00	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	6.2e-11	44.78	ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

BLAST of Cucsa.319790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126719\|ref\|XP_008463331.1\|	9.8e-43	53.68	PREDICTED: uncharacterized protein LOC103501512 [Cucumis melo]	[more]
gi\|659074589\|ref\|XP_008437686.1\|	8.3e-42	50.76	PREDICTED: uncharacterized protein LOC103483027 [Cucumis melo]	[more]
gi\|659129653\|ref\|XP_008464774.1\|	8.3e-42	72.73	PREDICTED: uncharacterized protein LOC103502582 [Cucumis melo]	[more]
gi\|659129653\|ref\|XP_008464774.1\|	8.9e-20	42.01	PREDICTED: uncharacterized protein LOC103502582 [Cucumis melo]	[more]
gi\|29423276\|gb\|AAO73525.1\|	1.4e-41	69.17	gag-pol polyprotein [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.319790.1	Cucsa.319790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 362..482 score: 2.2
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 289..482 score: 3.5
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 68..180 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.319790	CsaV3_1G015900	Cucumber (Chinese Long) v3	cgycucB497

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.319790	Cucumber (Gy14) v1	cgycgyB124
Cucsa.319790	Cucurbita maxima (Rimu)	cgycmaB0884
Cucsa.319790	Cucurbita moschata (Rifu)	cgycmoB0883
Cucsa.319790	Wild cucumber (PI 183967)	cgycpiB482
Cucsa.319790	Wild cucumber (PI 183967)	cgycpiB483
Cucsa.319790	Cucumber (Chinese Long) v2	cgycuB457
Cucsa.319790	Melon (DHL92) v3.5.1	cgymeB529
Cucsa.319790	Watermelon (Charleston Gray)	cgywcgB552
Cucsa.319790	Watermelon (Charleston Gray)	cgywcgB553
Cucsa.319790	Watermelon (97103) v1	cgywmB581
Cucsa.319790	Cucurbita pepo (Zucchini)	cgycpeB0841
Cucsa.319790	Bottle gourd (USVL1VR-Ls)	cgylsiB523
Cucsa.319790	Melon (DHL92) v3.6.1	cgymedB528
Cucsa.319790	Melon (DHL92) v3.6.1	cgymedB530
Cucsa.319790	Silver-seed gourd	carcgyB0000
Cucsa.319790	Cucumber (Chinese Long) v3	cgycucB498
Cucsa.319790	Cucumber (Chinese Long) v3	cgycucB496
Cucsa.319790	Watermelon (97103) v2	cgywmbB557
Cucsa.319790	Watermelon (97103) v2	cgywmbB558
Cucsa.319790	Watermelon (97103) v2	cgywmbB559
Cucsa.319790	Wax gourd	cgywgoB639