Cucsa.319740 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.319740
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionMuDRA transposase-like
Locationscaffold03078 : 421942 .. 422253 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAAGTTAGTTCTACAAAAGAAAAACAAGAACGAGCTTTGATAATGGTCAACCCAATTGACTGTTACCAATTCAATGTTAAAGATTTAGATAAAGAGGAGGTCGTAAATCTTCATACTCAAGAGTGCACTTGTAAGGAGTTTCAAGCTAAGCAACTACCATGCGCTCATGTCATTGCTGCAGCACGAGATCGCAATATAGATGTTTATAGTTTATGTGCTAACTATTACACTAATCCAGTCGGAAAtCAGTCGGATTGGAAGACATGTGAAGAATTTGTACATATGACGCCTTACCTCCAAAAGTAG

mRNA sequence

atgggaaaagttagttctacaaaagaaaaacaagaacgagctttgataatggtcaacccaattgactgttaccaattcaatgttaaagatttagataaagaggaggtcgtaaatcttcatactcaagagtgcacttgtaaggagtttcaagctaagcaactaccatgcgctcatgtcattgctgcagcacgagatcgcaatatagatgtttatagtttatgtgctaactattacactaatccagtcggaaatcagtcggattggaagacatgtgaagaatttgtacatatgacgccttacctccaaaagtag

Coding sequence (CDS)

ATGGGAAAAGTTAGTTCTACAAAAGAAAAACAAGAACGAGCTTTGATAATGGTCAACCCAATTGACTGTTACCAATTCAATGTTAAAGATTTAGATAAAGAGGAGGTCGTAAATCTTCATACTCAAGAGTGCACTTGTAAGGAGTTTCAAGCTAAGCAACTACCATGCGCTCATGTCATTGCTGCAGCACGAGATCGCAATATAGATGTTTATAGTTTATGTGCTAACTATTACACTAATCCAGTCGGAAAtCAGTCGGATTGGAAGACATGTGAAGAATTTGTACATATGACGCCTTACCTCCAAAAGTAG

Protein sequence

MGKVSSTKEKQERALIMVNPIDCYQFNVKDLDKEEVVNLHTQECTCKEFQAKQLPCAHVIAAARDRNIDVYSLCANYYTNPVGNQSDWKTCEEFVHMTPYLQK*
Homology
[Close]
BLAST of Cucsa.319740 vs. TrEMBL
Match: Q5GIT1_CUCME (MuDRA transposase-like OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-34
Identity = 76/104 (73.08%), Postives = 85/104 (81.73%), Query Frame = 1 

Query: 8   KEKQERALIM-VNPIDCYQFNVKDLDKEEVVNLHTQECTCKEFQAKQLPCAHVIAAARDR 67
           ++KQE AL M VNPIDCYQF+VKDLDKEEVVNL T+ECTCKEFQA+QLPC+H IAAAR R
Sbjct: 647 QKKQEGALTMKVNPIDCYQFHVKDLDKEEVVNLQTKECTCKEFQAEQLPCSHAIAAARVR 706

Query: 68  NIDVYSLCANYYTN------------PVGNQSDWKTCEEFVHMT 99
           NI+VYSLCANYYTN            PVGNQSDWKT E++VHMT
Sbjct: 707 NINVYSLCANYYTNECLLAAYAEAVYPVGNQSDWKTSEDYVHMT 750

[Close]
BLAST of Cucsa.319740 vs. TrEMBL
Match: M5XAD6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb020678mg PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.3e-12
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 1 

Query: 16  IMVNPIDCYQFNVKDLDKEEVVNLHTQECTCKEFQAKQLPCAHVIAAARDRNIDVYSLCA 75
           + V+PI+ Y F+V +  + EVVNL  + CTC+EF   QLPCAH  AA R R I  Y +C+
Sbjct: 29  VQVSPIEAYSFHVYNGCRVEVVNLERKCCTCREFDLDQLPCAHACAACRHRQISCYPMCS 88

Query: 76  NYYTN------------PVGNQSDW 89
            YYT             PVG+Q+DW
Sbjct: 89  QYYTTNSLVIAYAEPIWPVGDQTDW 113

[Close]
BLAST of Cucsa.319740 vs. TrEMBL
Match: U5CU95_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03836p00001310 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.1e-10
Identity = 34/91 (37.36%), Postives = 48/91 (52.75%), Query Frame = 1 

Query: 16  IMVNPIDCYQFNVKDLDKEEVVNLHTQECTCKEFQAKQLPCAHVIAAARDRNIDVYSLCA 75
           + V P +   F V D D+  +VNL  + CTC  FQ  ++PC H +A  +D NI+ Y+ CA
Sbjct: 68  LTVKPANQNLFEVIDEDRTRIVNLKEKTCTCNRFQKDEMPCNHAVAVMKDLNINTYNYCA 127

Query: 76  NYYTN------------PVGNQSDWKTCEEF 95
            YYT+            PVGN  +W+  E F
Sbjct: 128 QYYTSKAWLQTYEETVYPVGNVREWELPEFF 158

[Close]
BLAST of Cucsa.319740 vs. TrEMBL
Match: A5B699_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042737 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.3e-09
Identity = 34/87 (39.08%), Postives = 46/87 (52.87%), Query Frame = 1 

Query: 14  ALIMVNPIDCYQFNVKDLDKEEVVNLHTQECTCKEFQAKQLPCAHVIAAARDRNIDVYSL 73
           A  +V PI+  + NV  +     VNL T+ CTC++F    +PCAH IAA R  NI  Y+L
Sbjct: 416 ATYLVEPINSKECNVNYVGISAQVNLDTRSCTCRQFDLDHIPCAHAIAACRFYNISCYTL 475

Query: 74  CANYYTN------------PVGNQSDW 89
           C+ Y+T             P GN+ DW
Sbjct: 476 CSKYFTTKALLSSYSECIYPNGNEIDW 502

[Close]
BLAST of Cucsa.319740 vs. TrEMBL
Match: A5ADM9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004945 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-08
Identity = 33/87 (37.93%), Postives = 44/87 (50.57%), Query Frame = 1 

Query: 14  ALIMVNPIDCYQFNVKDLDKEEVVNLHTQECTCKEFQAKQLPCAHVIAAARDRNIDVYSL 73
           A  +V PI+  + NV        VNL T+ CTC++F    +PCAH IAA    NI  Y+L
Sbjct: 540 ATYLVEPINSKECNVNYXGISAQVNLDTRSCTCRQFDLDHIPCAHAIAACXFYNISCYTL 599

Query: 74  CANYYTN------------PVGNQSDW 89
           C+ Y+T             P GN+ DW
Sbjct: 600 CSKYFTTKALLSSYSECIYPTGNEIDW 626

[Close]
BLAST of Cucsa.319740 vs. NCBI nr
Match: gi|778688681|ref|XP_011652811.1| (PREDICTED: uncharacterized protein LOC101218844 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 2.9e-37
Identity = 79/104 (75.96%), Postives = 87/104 (83.65%), Query Frame = 1 

Query: 8   KEKQERALIM-VNPIDCYQFNVKDLDKEEVVNLHTQECTCKEFQAKQLPCAHVIAAARDR 67
           ++KQERAL M VNPIDCYQF+VKDLDKEEV+NLHTQECTCKEFQA+QLPCAH IA ARDR
Sbjct: 292 QKKQERALTMKVNPIDCYQFHVKDLDKEEVINLHTQECTCKEFQAEQLPCAHAIAVARDR 351

Query: 68  NIDVYSLCANYYTN------------PVGNQSDWKTCEEFVHMT 99
           NI+VYSLCANYYTN            PVGNQS+WKT EE+VHMT
Sbjct: 352 NINVYSLCANYYTNECLLAAYSEAVYPVGNQSEWKTTEEYVHMT 395

[Close]
BLAST of Cucsa.319740 vs. NCBI nr
Match: gi|778670269|ref|XP_011649424.1| (PREDICTED: uncharacterized protein LOC105434626 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 2.9e-37
Identity = 79/104 (75.96%), Postives = 87/104 (83.65%), Query Frame = 1 

Query: 8   KEKQERALIM-VNPIDCYQFNVKDLDKEEVVNLHTQECTCKEFQAKQLPCAHVIAAARDR 67
           ++KQERAL M VNPIDCYQF+VKDLDKEEV+NLHTQECTCKEFQA+QLPCAH IA ARDR
Sbjct: 247 QKKQERALTMKVNPIDCYQFHVKDLDKEEVINLHTQECTCKEFQAEQLPCAHAIAVARDR 306

Query: 68  NIDVYSLCANYYTN------------PVGNQSDWKTCEEFVHMT 99
           NI+VYSLCANYYTN            PVGNQS+WKT EE+VHMT
Sbjct: 307 NINVYSLCANYYTNECLLAAYSEAVYPVGNQSEWKTTEEYVHMT 350

[Close]
BLAST of Cucsa.319740 vs. NCBI nr
Match: gi|778703149|ref|XP_004149682.2| (PREDICTED: uncharacterized protein LOC101207197 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 2.9e-37
Identity = 79/104 (75.96%), Postives = 87/104 (83.65%), Query Frame = 1 

Query: 8   KEKQERALIM-VNPIDCYQFNVKDLDKEEVVNLHTQECTCKEFQAKQLPCAHVIAAARDR 67
           ++KQERAL M VNPIDCYQF+VKDLDKEEV+NLHTQECTCKEFQA+QLPCAH IA ARDR
Sbjct: 360 QKKQERALTMKVNPIDCYQFHVKDLDKEEVINLHTQECTCKEFQAEQLPCAHAIAVARDR 419

Query: 68  NIDVYSLCANYYTN------------PVGNQSDWKTCEEFVHMT 99
           NI+VYSLCANYYTN            PVGNQS+WKT EE+VHMT
Sbjct: 420 NINVYSLCANYYTNECLLAAYSEAVYPVGNQSEWKTTEEYVHMT 463

[Close]
BLAST of Cucsa.319740 vs. NCBI nr
Match: gi|778688624|ref|XP_011652796.1| (PREDICTED: uncharacterized protein LOC101208747 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 8.6e-37
Identity = 78/104 (75.00%), Postives = 86/104 (82.69%), Query Frame = 1 

Query: 8   KEKQERALIM-VNPIDCYQFNVKDLDKEEVVNLHTQECTCKEFQAKQLPCAHVIAAARDR 67
           ++KQERAL M VNPIDCYQF+VKDLDKEEV+NLHTQECTCKEFQA+QLPCAH I  ARDR
Sbjct: 51  QKKQERALTMKVNPIDCYQFHVKDLDKEEVINLHTQECTCKEFQAEQLPCAHAIVVARDR 110

Query: 68  NIDVYSLCANYYTN------------PVGNQSDWKTCEEFVHMT 99
           NI+VYSLCANYYTN            PVGNQS+WKT EE+VHMT
Sbjct: 111 NINVYSLCANYYTNECLLAAYSEAVYPVGNQSEWKTTEEYVHMT 154

[Close]
BLAST of Cucsa.319740 vs. NCBI nr
Match: gi|46398239|gb|AAS91797.1| (MuDRA-like transposase [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 2.3e-34
Identity = 76/104 (73.08%), Postives = 85/104 (81.73%), Query Frame = 1 

Query: 8   KEKQERALIM-VNPIDCYQFNVKDLDKEEVVNLHTQECTCKEFQAKQLPCAHVIAAARDR 67
           ++KQE AL M VNPIDCYQF+VKDLDKEEVVNL T+ECTCKEFQA+QLPC+H IAAAR R
Sbjct: 647 QKKQEGALTMKVNPIDCYQFHVKDLDKEEVVNLQTKECTCKEFQAEQLPCSHAIAAARVR 706

Query: 68  NIDVYSLCANYYTN------------PVGNQSDWKTCEEFVHMT 99
           NI+VYSLCANYYTN            PVGNQSDWKT E++VHMT
Sbjct: 707 NINVYSLCANYYTNECLLAAYAEAVYPVGNQSDWKTSEDYVHMT 750

The following BLAST results are available for this feature:
BLAST of Cucsa.319740 vs. TrEMBL
Match NameE-valueIdentityDescription
Q5GIT1_CUCME1.6e-3473.08MuDRA transposase-like OS=Cucumis melo PE=4 SV=1[more]
M5XAD6_PRUPE2.3e-1244.71Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb020678mg PE=4 SV=1[more]
U5CU95_AMBTC8.1e-1037.36Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03836p00001310 PE=4 SV=... [more]
A5B699_VITVI5.3e-0939.08Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042737 PE=4 SV=1[more]
A5ADM9_VITVI2.0e-0837.93Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004945 PE=4 SV=1[more]
BLAST of Cucsa.319740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778688681|ref|XP_011652811.1|2.9e-3775.96PREDICTED: uncharacterized protein LOC101218844 [Cucumis sativus][more]
gi|778670269|ref|XP_011649424.1|2.9e-3775.96PREDICTED: uncharacterized protein LOC105434626 [Cucumis sativus][more]
gi|778703149|ref|XP_004149682.2|2.9e-3775.96PREDICTED: uncharacterized protein LOC101207197 [Cucumis sativus][more]
gi|778688624|ref|XP_011652796.1|8.6e-3775.00PREDICTED: uncharacterized protein LOC101208747 [Cucumis sativus][more]
gi|46398239|gb|AAS91797.1|2.3e-3473.08MuDRA-like transposase [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006564Znf_PMZ
IPR007527Znf_SWIM
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.319740.1Cucsa.319740.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006564Zinc finger, PMZ-typeSMARTSM0057526again6coord: 42..69
score: 3.
IPR007527Zinc finger, SWIM-typePFAMPF04434SWIMcoord: 37..64
score: 1.
IPR007527Zinc finger, SWIM-typePROFILEPS50966ZF_SWIMcoord: 24..67
score: 1
NoneNo IPR availablePANTHERPTHR31973FAMILY NOT NAMEDcoord: 17..93
score: 5.2
NoneNo IPR availablePANTHERPTHR31973:SF0SUBFAMILY NOT NAMEDcoord: 17..93
score: 5.2