Cucsa.319450 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.319450
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRas-related protein RABB1c
Locationscaffold03078 : 174278 .. 174423 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAGTGATGAGAATGATGTAATTGATTGAATGTTCCATCTTATGTGCAGTCCTATGGGATAAAAGTTGGATATGGTGGAATCCCAGGGCCATCAGGAGGCAGAGATGGTGCTACAGCTCAATCTGGGGGTTGTTGCAGTTAA

mRNA sequence

ATGAATAGTGATGAGAATGATTCCTATGGGATAAAAGTTGGATATGGTGGAATCCCAGGGCCATCAGGAGGCAGAGATGGTGCTACAGCTCAATCTGGGGGTTGTTGCAGTTAA

Coding sequence (CDS)

ATGAATAGTGATGAGAATGATTCCTATGGGATAAAAGTTGGATATGGTGGAATCCCAGGGCCATCAGGAGGCAGAGATGGTGCTACAGCTCAATCTGGGGGTTGTTGCAGTTAA

Protein sequence

MNSDENDSYGIKVGYGGIPGPSGGRDGATAQSGGCCS*
Homology
[Close]
BLAST of Cucsa.319450 vs. Swiss-Prot
Match: RAB1C_ARATH (Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.0e-11
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 1 

Query: 6   NDSYGIKVGYGGIPGPSGGRDGATAQSGGCC 37
           N+SYGIKVGYGGIPGPSGGRDG+T+Q GGCC
Sbjct: 180 NESYGIKVGYGGIPGPSGGRDGSTSQGGGCC 210

[Close]
BLAST of Cucsa.319450 vs. TrEMBL
Match: A0A0A0LYF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172570 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-10
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1 

Query: 6   NDSYGIKVGYGGIPGPSGGRDGATAQSGGCCS 38
           N+SYGIKVGYGGIPGPSGGRDGATAQSGGCCS
Sbjct: 180 NESYGIKVGYGGIPGPSGGRDGATAQSGGCCS 211

[Close]
BLAST of Cucsa.319450 vs. TrEMBL
Match: A0A068UD81_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021537001 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-09
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 1 

Query: 6   NDSYGIKVGYGGIPGPSGGRDGATAQSGGCCS 38
           N+SYGIKVGYGGIPGPSGGRDGA AQ GGCCS
Sbjct: 180 NESYGIKVGYGGIPGPSGGRDGAAAQGGGCCS 211

[Close]
BLAST of Cucsa.319450 vs. TrEMBL
Match: A9PGF6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s00360g PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.5e-09
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 1 

Query: 6   NDSYGIKVGYGGIPGPSGGRDGATAQSGGCCS 38
           N+SYGIKVGYGGIPGPSGGRDG +AQ+GGCCS
Sbjct: 180 NESYGIKVGYGGIPGPSGGRDGGSAQAGGCCS 211

[Close]
BLAST of Cucsa.319450 vs. TrEMBL
Match: U6C2W4_NICAL (Predicted Rab2 GTPase ortholog (Fragment) OS=Nicotiana alata GN=NaRAB2 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.3e-09
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 1 

Query: 6  NDSYGIKVGYGGIPGPSGGRDGATAQSGGCCS 38
          N+SYGIKVGYGGIPGPSGGRDGA +Q GGCCS
Sbjct: 17 NESYGIKVGYGGIPGPSGGRDGAASQGGGCCS 48

[Close]
BLAST of Cucsa.319450 vs. TrEMBL
Match: Q946G3_TOBAC (Small GTPase Rab2 OS=Nicotiana tabacum GN=Rab2 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.3e-09
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 1 

Query: 6   NDSYGIKVGYGGIPGPSGGRDGATAQSGGCCS 38
           N+SYGIKVGYGGIPGPSGGRDGA +Q GGCCS
Sbjct: 180 NESYGIKVGYGGIPGPSGGRDGAASQGGGCCS 211

[Close]
BLAST of Cucsa.319450 vs. TAIR10
Match: AT4G17170.1 (AT4G17170.1 RAB GTPase homolog B1C)

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-12
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 1 

Query: 6   NDSYGIKVGYGGIPGPSGGRDGATAQSGGCC 37
           N+SYGIKVGYGGIPGPSGGRDG+T+Q GGCC
Sbjct: 180 NESYGIKVGYGGIPGPSGGRDGSTSQGGGCC 210

[Close]
BLAST of Cucsa.319450 vs. TAIR10
Match: AT4G35860.1 (AT4G35860.1 GTP-binding 2)

HSP 1 Score: 48.1 bits (113), Expect = 1.4e-06
Identity = 19/31 (61.29%), Postives = 23/31 (74.19%), Query Frame = 1 

Query: 6   NDSYGIKVGYGGIPGPSGGRDGATAQSGGCC 37
           N+S GIK+GYG   G +GGRDG  +Q GGCC
Sbjct: 180 NESSGIKIGYGRTQGAAGGRDGTISQGGGCC 210

[Close]
BLAST of Cucsa.319450 vs. NCBI nr
Match: gi|449443494|ref|XP_004139512.1| (PREDICTED: ras-related protein RABB1c [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-10
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1 

Query: 6   NDSYGIKVGYGGIPGPSGGRDGATAQSGGCCS 38
           N+SYGIKVGYGGIPGPSGGRDGATAQSGGCCS
Sbjct: 180 NESYGIKVGYGGIPGPSGGRDGATAQSGGCCS 211

[Close]
BLAST of Cucsa.319450 vs. NCBI nr
Match: gi|661890647|emb|CDP06144.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 68.9 bits (167), Expect = 2.1e-09
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 1 

Query: 6   NDSYGIKVGYGGIPGPSGGRDGATAQSGGCCS 38
           N+SYGIKVGYGGIPGPSGGRDGA AQ GGCCS
Sbjct: 180 NESYGIKVGYGGIPGPSGGRDGAAAQGGGCCS 211

[Close]
BLAST of Cucsa.319450 vs. NCBI nr
Match: gi|657984461|ref|XP_008384325.1| (PREDICTED: ras-related protein RABB1c [Malus domestica])

HSP 1 Score: 68.6 bits (166), Expect = 2.8e-09
Identity = 28/32 (87.50%), Postives = 32/32 (100.00%), Query Frame = 1 

Query: 6   NDSYGIKVGYGGIPGPSGGRDGATAQSGGCCS 38
           N+SYGIKVGYGGIPGPSGGRDGA++Q+GGCCS
Sbjct: 180 NESYGIKVGYGGIPGPSGGRDGASSQAGGCCS 211

[Close]
BLAST of Cucsa.319450 vs. NCBI nr
Match: gi|224089509|ref|XP_002308739.1| (hypothetical protein POPTR_0006s00360g [Populus trichocarpa])

HSP 1 Score: 68.2 bits (165), Expect = 3.6e-09
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 1 

Query: 6   NDSYGIKVGYGGIPGPSGGRDGATAQSGGCCS 38
           N+SYGIKVGYGGIPGPSGGRDG +AQ+GGCCS
Sbjct: 180 NESYGIKVGYGGIPGPSGGRDGGSAQAGGCCS 211

[Close]
BLAST of Cucsa.319450 vs. NCBI nr
Match: gi|553726739|dbj|BAO02541.1| (predicted Rab2 GTPase ortholog, partial [Nicotiana alata])

HSP 1 Score: 67.8 bits (164), Expect = 4.7e-09
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 1 

Query: 6  NDSYGIKVGYGGIPGPSGGRDGATAQSGGCCS 38
          N+SYGIKVGYGGIPGPSGGRDGA +Q GGCCS
Sbjct: 17 NESYGIKVGYGGIPGPSGGRDGAASQGGGCCS 48

The following BLAST results are available for this feature:
BLAST of Cucsa.319450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RAB1C_ARATH5.0e-1187.10Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=1 SV=1[more]
BLAST of Cucsa.319450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYF8_CUCSA1.3e-1096.88Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172570 PE=4 SV=1[more]
A0A068UD81_COFCA1.5e-0990.63Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021537001 PE=4 SV=1[more]
A9PGF6_POPTR2.5e-0987.50Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s00360g PE=2 SV=1[more]
U6C2W4_NICAL3.3e-0987.50Predicted Rab2 GTPase ortholog (Fragment) OS=Nicotiana alata GN=NaRAB2 PE=2 SV=1[more]
Q946G3_TOBAC3.3e-0987.50Small GTPase Rab2 OS=Nicotiana tabacum GN=Rab2 PE=2 SV=1[more]
BLAST of Cucsa.319450 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G17170.12.8e-1287.10 RAB GTPase homolog B1C[more]
AT4G35860.11.4e-0661.29 GTP-binding 2[more]
BLAST of Cucsa.319450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443494|ref|XP_004139512.1|1.9e-1096.88PREDICTED: ras-related protein RABB1c [Cucumis sativus][more]
gi|661890647|emb|CDP06144.1|2.1e-0990.63unnamed protein product [Coffea canephora][more]
gi|657984461|ref|XP_008384325.1|2.8e-0987.50PREDICTED: ras-related protein RABB1c [Malus domestica][more]
gi|224089509|ref|XP_002308739.1|3.6e-0987.50hypothetical protein POPTR_0006s00360g [Populus trichocarpa][more]
gi|553726739|dbj|BAO02541.1|4.7e-0987.50predicted Rab2 GTPase ortholog, partial [Nicotiana alata][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.319450.1Cucsa.319450.1mRNA